mRNA_F-distichus_contig99586.19402.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig99586.19402.1
Unique NamemRNA_F-distichus_contig99586.19402.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig99586.19402.1 vs. uniprot
Match: A0A6H5K5Q3_9PHAE (AP4E_app_platf domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K5Q3_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 6.530e-31
Identity = 61/62 (98.39%), Postives = 62/62 (100.00%), Query Frame = 1 
Query:    4 SEGMYEVLMDVMRRADTGINVGYAVVYECVRTVTTIYPNAPLLDAAAASISRFISAENHNLK 189
            SEGMYEVLMDVMRRADTGINVGYAVVYECVRTVT+IYPNAPLLDAAAASISRFISAENHNLK
Sbjct:  266 SEGMYEVLMDVMRRADTGINVGYAVVYECVRTVTSIYPNAPLLDAAAASISRFISAENHNLK 327
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BLAST of mRNA_F-distichus_contig99586.19402.1 vs. uniprot
Match: A0A8K1CC85_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CC85_PYTOL)

HSP 1 Score: 115 bits (287), Expect = 2.400e-28
Identity = 56/62 (90.32%), Postives = 60/62 (96.77%), Query Frame = 1 
Query:    4 SEGMYEVLMDVMRRADTGINVGYAVVYECVRTVTTIYPNAPLLDAAAASISRFISAENHNLK 189
            SEGMYEVL DVMRRADTGINVGYA++YECVRTVTTIYPN+ LLDAAAASISRFIS+ENHNLK
Sbjct:  274 SEGMYEVLHDVMRRADTGINVGYAIIYECVRTVTTIYPNSTLLDAAAASISRFISSENHNLK 335
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BLAST of mRNA_F-distichus_contig99586.19402.1 vs. uniprot
Match: A0A397FCZ5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397FCZ5_9STRA)

HSP 1 Score: 114 bits (284), Expect = 4.650e-28
Identity = 55/62 (88.71%), Postives = 60/62 (96.77%), Query Frame = 1 
Query:    4 SEGMYEVLMDVMRRADTGINVGYAVVYECVRTVTTIYPNAPLLDAAAASISRFISAENHNLK 189
            SEGMYEVL DVMRRADTGINVGYA++YECVRTVTTIYPN+ LLDAAAASISRFIS++NHNLK
Sbjct:  436 SEGMYEVLHDVMRRADTGINVGYAIIYECVRTVTTIYPNSTLLDAAAASISRFISSDNHNLK 497
[Close]
BLAST of mRNA_F-distichus_contig99586.19402.1 vs. uniprot
Match: A0A2D4C9Y2_PYTIN (AP-2 complex subunit alpha n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C9Y2_PYTIN)

HSP 1 Score: 114 bits (284), Expect = 6.100e-28
Identity = 55/62 (88.71%), Postives = 60/62 (96.77%), Query Frame = 1 
Query:    4 SEGMYEVLMDVMRRADTGINVGYAVVYECVRTVTTIYPNAPLLDAAAASISRFISAENHNLK 189
            SEGMYEVL DVMRRADTGINVGYA++YECVRTVTTIYPN+ LLDAAAASISRFIS++NHNLK
Sbjct:  212 SEGMYEVLHDVMRRADTGINVGYAIIYECVRTVTTIYPNSTLLDAAAASISRFISSDNHNLK 273
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BLAST of mRNA_F-distichus_contig99586.19402.1 vs. uniprot
Match: A0A1V9ZUG4_9STRA (AP-2 complex subunit alpha n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZUG4_9STRA)

HSP 1 Score: 114 bits (284), Expect = 6.110e-28
Identity = 55/62 (88.71%), Postives = 60/62 (96.77%), Query Frame = 1 
Query:    4 SEGMYEVLMDVMRRADTGINVGYAVVYECVRTVTTIYPNAPLLDAAAASISRFISAENHNLK 189
            SEGMYEVL DVMRRADTGINVGYA++YECVRTVTTIYPN+ LLDAAAASISRFIS++NHNLK
Sbjct:  275 SEGMYEVLHDVMRRADTGINVGYAIIYECVRTVTTIYPNSTLLDAAAASISRFISSDNHNLK 336
[Close]
BLAST of mRNA_F-distichus_contig99586.19402.1 vs. uniprot
Match: A0A067CEU5_SAPPC (AP4E_app_platf domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CEU5_SAPPC)

HSP 1 Score: 114 bits (284), Expect = 6.110e-28
Identity = 55/62 (88.71%), Postives = 60/62 (96.77%), Query Frame = 1 
Query:    4 SEGMYEVLMDVMRRADTGINVGYAVVYECVRTVTTIYPNAPLLDAAAASISRFISAENHNLK 189
            SEGMYEVL DVMRRADTGINVGYA++YECVRTVTTIYPN+ LLDAAAASISRFIS++NHNLK
Sbjct:  267 SEGMYEVLHDVMRRADTGINVGYAIIYECVRTVTTIYPNSTLLDAAAASISRFISSDNHNLK 328
[Close]
BLAST of mRNA_F-distichus_contig99586.19402.1 vs. uniprot
Match: A0A1V9ZX26_9STRA (AP-2 complex subunit alpha n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZX26_9STRA)

HSP 1 Score: 114 bits (284), Expect = 6.110e-28
Identity = 55/62 (88.71%), Postives = 60/62 (96.77%), Query Frame = 1 
Query:    4 SEGMYEVLMDVMRRADTGINVGYAVVYECVRTVTTIYPNAPLLDAAAASISRFISAENHNLK 189
            SEGMYEVL DVMRRADTGINVGYA++YECVRTVTTIYPN+ LLDAAAASISRFIS++NHNLK
Sbjct:  275 SEGMYEVLHDVMRRADTGINVGYAIIYECVRTVTTIYPNSTLLDAAAASISRFISSDNHNLK 336
[Close]
BLAST of mRNA_F-distichus_contig99586.19402.1 vs. uniprot
Match: A0A5D6XL02_9STRA (AP-2 complex subunit alpha n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XL02_9STRA)

HSP 1 Score: 114 bits (284), Expect = 6.110e-28
Identity = 55/62 (88.71%), Postives = 60/62 (96.77%), Query Frame = 1 
Query:    4 SEGMYEVLMDVMRRADTGINVGYAVVYECVRTVTTIYPNAPLLDAAAASISRFISAENHNLK 189
            SEGMYEVL DVMRRADTGINVGYA++YECVRTVTTIYPN+ LLDAAAASISRFIS++NHNLK
Sbjct:  208 SEGMYEVLHDVMRRADTGINVGYAIIYECVRTVTTIYPNSTLLDAAAASISRFISSDNHNLK 269
[Close]
BLAST of mRNA_F-distichus_contig99586.19402.1 vs. uniprot
Match: A0A6G0XRJ2_9STRA (AP-2 complex subunit alpha n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XRJ2_9STRA)

HSP 1 Score: 114 bits (284), Expect = 6.110e-28
Identity = 55/62 (88.71%), Postives = 60/62 (96.77%), Query Frame = 1 
Query:    4 SEGMYEVLMDVMRRADTGINVGYAVVYECVRTVTTIYPNAPLLDAAAASISRFISAENHNLK 189
            SEGMYEVL DVMRRADTGINVGYA++YECVRTVTTIYPN+ LLDAAAASISRFIS++NHNLK
Sbjct:  275 SEGMYEVLHDVMRRADTGINVGYAIIYECVRTVTTIYPNSTLLDAAAASISRFISSDNHNLK 336
[Close]
BLAST of mRNA_F-distichus_contig99586.19402.1 vs. uniprot
Match: F0WNJ8_9STRA (AP-2 complex subunit alpha n=2 Tax=Albugo TaxID=65356 RepID=F0WNJ8_9STRA)

HSP 1 Score: 114 bits (284), Expect = 6.110e-28
Identity = 55/62 (88.71%), Postives = 60/62 (96.77%), Query Frame = 1 
Query:    4 SEGMYEVLMDVMRRADTGINVGYAVVYECVRTVTTIYPNAPLLDAAAASISRFISAENHNLK 189
            SEGMYEVL DVMRRADTGINVGYA++YECVRTVTTIYPN+ LLDAAAASISRFIS++NHNLK
Sbjct:  274 SEGMYEVLHDVMRRADTGINVGYAIIYECVRTVTTIYPNSTLLDAAAASISRFISSDNHNLK 335
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig99586.19402.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K5Q3_9PHAE6.530e-3198.39AP4E_app_platf domain-containing protein n=2 Tax=E... [more]
A0A8K1CC85_PYTOL2.400e-2890.32Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A397FCZ5_9STRA4.650e-2888.71Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A2D4C9Y2_PYTIN6.100e-2888.71AP-2 complex subunit alpha n=1 Tax=Pythium insidio... [more]
A0A1V9ZUG4_9STRA6.110e-2888.71AP-2 complex subunit alpha n=1 Tax=Achlya hypogyna... [more]
A0A067CEU5_SAPPC6.110e-2888.71AP4E_app_platf domain-containing protein n=2 Tax=S... [more]
A0A1V9ZX26_9STRA6.110e-2888.71AP-2 complex subunit alpha n=1 Tax=Thraustotheca c... [more]
A0A5D6XL02_9STRA6.110e-2888.71AP-2 complex subunit alpha n=1 Tax=Pythium brassic... [more]
A0A6G0XRJ2_9STRA6.110e-2888.71AP-2 complex subunit alpha n=1 Tax=Aphanomyces eut... [more]
F0WNJ8_9STRA6.110e-2888.71AP-2 complex subunit alpha n=2 Tax=Albugo TaxID=65... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig99586contigF-distichus_contig99586:1329..1520 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.5
Seed ortholog evalue2.2e-24
Seed eggNOG ortholog2880.D7FX42
Preferred nameAP4E1
KEGG koko:K12400,ko:K20164
KEGG Pathwayko04142,map04142
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000139,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0006605,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0030117,GO:0030119,GO:0030124,GO:0031090,GO:0031410,GO:0031904,GO:0031974,GO:0031982,GO:0031984,GO:0032588,GO:0032991,GO:0033036,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048475,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070013,GO:0070727,GO:0071702,GO:0071705,GO:0097708,GO:0098588,GO:0098791,GO:0098796
EggNOG free text desc.intracellular protein transport
EggNOG OGsCOG4354@1,KOG1062@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons1
Model size192
Cds size180
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931177.952257-UTR-F-distichus_contig99586:1328..13401622931177.952257-UTR-F-distichus_contig99586:1328..1340Fucus distichus monoicousUTRF-distichus_contig99586 1329..1340 +
1690886192.2923737-UTR-F-distichus_contig99586:1328..13401690886192.2923737-UTR-F-distichus_contig99586:1328..1340Fucus distichus monoicousUTRF-distichus_contig99586 1329..1340 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931177.9726768-CDS-F-distichus_contig99586:1340..15201622931177.9726768-CDS-F-distichus_contig99586:1340..1520Fucus distichus monoicousCDSF-distichus_contig99586 1341..1520 +
1690886192.3054597-CDS-F-distichus_contig99586:1340..15201690886192.3054597-CDS-F-distichus_contig99586:1340..1520Fucus distichus monoicousCDSF-distichus_contig99586 1341..1520 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig99586.19402.1prot_F-distichus_contig99586.19402.1Fucus distichus monoicouspolypeptideF-distichus_contig99586 1341..1520 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig99586.19402.1

>prot_F-distichus_contig99586.19402.1 ID=prot_F-distichus_contig99586.19402.1|Name=mRNA_F-distichus_contig99586.19402.1|organism=Fucus distichus monoicous|type=polypeptide|length=60bp
MYEVLMDVMRRADTGINVGYAVVYECVRTVTTIYPNAPLLDAAAASISRF
ISAENHNLK*
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mRNA from alignment at F-distichus_contig99586:1329..1520+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig99586.19402.1 ID=mRNA_F-distichus_contig99586.19402.1|Name=mRNA_F-distichus_contig99586.19402.1|organism=Fucus distichus monoicous|type=mRNA|length=192bp|location=Sequence derived from alignment at F-distichus_contig99586:1329..1520+ (Fucus distichus monoicous)
GCCAGCGAGGGCATGTACGAGGTGCTTATGGACGTGATGCGTCGAGCGGA
CACGGGCATCAACGTGGGCTATGCCGTGGTGTACGAGTGTGTACGGACGG
TGACCACGATCTACCCCAACGCTCCGCTGTTGGACGCGGCGGCAGCCAGC
ATCTCGCGATTCATCTCGGCGGAGAATCACAATCTCAAGTAA
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Coding sequence (CDS) from alignment at F-distichus_contig99586:1329..1520+

>mRNA_F-distichus_contig99586.19402.1 ID=mRNA_F-distichus_contig99586.19402.1|Name=mRNA_F-distichus_contig99586.19402.1|organism=Fucus distichus monoicous|type=CDS|length=360bp|location=Sequence derived from alignment at F-distichus_contig99586:1329..1520+ (Fucus distichus monoicous)
ATGTACGAGGTGCTTATGGACGTGATGCGTCGAGCGGACACGGGCATCAA
CGTGGGCTATGCCGTGGTGTACGAGTGTGTACGGACGGTGACCACGATCT
ACCCCAACGCTCCGCTGTTGGACGCGGCGGCAGCCAGCATCTCGCGATTC
ATCTCGGCGGAGAATCACAATCTCAAGTAAATGTACGAGGTGCTTATGGA
CGTGATGCGTCGAGCGGACACGGGCATCAACGTGGGCTATGCCGTGGTGT
ACGAGTGTGTACGGACGGTGACCACGATCTACCCCAACGCTCCGCTGTTG
GACGCGGCGGCAGCCAGCATCTCGCGATTCATCTCGGCGGAGAATCACAA
TCTCAAGTAA
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