mRNA_F-distichus_contig99583.19401.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig99583.19401.1
Unique NamemRNA_F-distichus_contig99583.19401.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig99583.19401.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig99583contigF-distichus_contig99583:1728..2115 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size390
Cds size300
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931177.8881032-CDS-F-distichus_contig99583:1727..20271622931177.8881032-CDS-F-distichus_contig99583:1727..2027Fucus distichus monoicousCDSF-distichus_contig99583 1728..2027 +
1690886192.2697442-CDS-F-distichus_contig99583:1727..20271690886192.2697442-CDS-F-distichus_contig99583:1727..2027Fucus distichus monoicousCDSF-distichus_contig99583 1728..2027 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931177.901201-UTR-F-distichus_contig99583:2027..21151622931177.901201-UTR-F-distichus_contig99583:2027..2115Fucus distichus monoicousUTRF-distichus_contig99583 2028..2115 +
1690886192.2805421-UTR-F-distichus_contig99583:2027..21151690886192.2805421-UTR-F-distichus_contig99583:2027..2115Fucus distichus monoicousUTRF-distichus_contig99583 2028..2115 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig99583.19401.1prot_F-distichus_contig99583.19401.1Fucus distichus monoicouspolypeptideF-distichus_contig99583 1728..2027 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig99583.19401.1

>prot_F-distichus_contig99583.19401.1 ID=prot_F-distichus_contig99583.19401.1|Name=mRNA_F-distichus_contig99583.19401.1|organism=Fucus distichus monoicous|type=polypeptide|length=100bp
NVAPSYPRIPNHEKSYCSISNVNYPIESLVCLKKHLNASRRSEHTVPQSR
SEKCHIGCFVLRARYVAECKKRHWCVLVYSDKNIVLYEGNDRECEEHLR*
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mRNA from alignment at F-distichus_contig99583:1728..2115+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig99583.19401.1 ID=mRNA_F-distichus_contig99583.19401.1|Name=mRNA_F-distichus_contig99583.19401.1|organism=Fucus distichus monoicous|type=mRNA|length=388bp|location=Sequence derived from alignment at F-distichus_contig99583:1728..2115+ (Fucus distichus monoicous)
AACGTAGCCCCATCCTATCCCCGGATCCCGAACCACGAGAAGAGCTACTG
CAGCATAAGCAATGTGAATTACCCTATCGAATCACTAGTTTGTTTAAAGA
AACATCTGAACGCATCTAGGCGTTCTGAGCATACTGTACCCCAGTCAAGG
AGCGAAAAATGTCACATAGGCTGCTTTGTTTTGCGGGCGCGCTATGTAGC
GGAATGCAAAAAGCGCCATTGGTGCGTGTTGGTGTACAGTGATAAAAATA
TTGTGCTGTACGAGGGCAACGATAGGGAATGCGAGGAGCATCTACGGTGA
TATTTCCATCAGTGCGCCTCAACGGGCTCATCATACTTCTGGTCGTTTGT
CTCGATCTACTCTCTTGGCAACAATGGCCGTGACGTCA
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Coding sequence (CDS) from alignment at F-distichus_contig99583:1728..2115+

>mRNA_F-distichus_contig99583.19401.1 ID=mRNA_F-distichus_contig99583.19401.1|Name=mRNA_F-distichus_contig99583.19401.1|organism=Fucus distichus monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at F-distichus_contig99583:1728..2115+ (Fucus distichus monoicous)
AACGTAGCCCCATCCTATCCCCGGATCCCGAACCACGAGAAGAGCTACTG
CAGCATAAGCAATGTGAATTACCCTATCGAATCACTAGTTTGTTTAAAGA
AACATCTGAACGCATCTAGGCGTTCTGAGCATACTGTACCCCAGTCAAGG
AGCGAAAAATGTCACATAGGCTGCTTTGTTTTGCGGGCGCGCTATGTAGC
GGAATGCAAAAAGCGCCATTGGTGCGTGTTGGTGTACAGTGATAAAAATA
TTGTGCTGTACGAGGGCAACGATAGGGAATGCGAGGAGCATCTACGGTGA
AACGTAGCCCCATCCTATCCCCGGATCCCGAACCACGAGAAGAGCTACTG
CAGCATAAGCAATGTGAATTACCCTATCGAATCACTAGTTTGTTTAAAGA
AACATCTGAACGCATCTAGGCGTTCTGAGCATACTGTACCCCAGTCAAGG
AGCGAAAAATGTCACATAGGCTGCTTTGTTTTGCGGGCGCGCTATGTAGC
GGAATGCAAAAAGCGCCATTGGTGCGTGTTGGTGTACAGTGATAAAAATA
TTGTGCTGTACGAGGGCAACGATAGGGAATGCGAGGAGCATCTACGGTGA
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