mRNA_F-distichus_contig99582.19400.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig99582.19400.1
Unique NamemRNA_F-distichus_contig99582.19400.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig99582.19400.1 vs. uniprot
Match: A0A165BJT7_EXIGL (Uncharacterized protein (Fragment) n=2 Tax=Exidia glandulosa HHB12029 TaxID=1314781 RepID=A0A165BJT7_EXIGL)

HSP 1 Score: 83.6 bits (205), Expect = 3.050e-16
Identity = 43/118 (36.44%), Postives = 64/118 (54.24%), Query Frame = 1
Query:   13 EPQSLRQAMESPEWECWQAAEKPEIGGLISRGVWTNCPCPKEKVVLGTKQLYSRESGERREVVKHKCRFFTQSFRQIKGLHCEDSSSPTPAAASIRMALATAAVIDMELRHIDFKQAY 366
            EP++L +A   P+W  W+ A + E+  L + G W     P    V+G+K ++  +      VV+HK R   Q F Q+ G+   D+ +P    ASIR+ LA AA +D+EL  ID K AY
Sbjct:  677 EPRTLSEAQRRPDWTLWEQAIREELATLDAMGTWELVDAPAGANVVGSKWVFRAKKDATGSVVRHKARLVAQGFSQVPGVDYFDTFAPVAKLASIRIVLAMAARLDLELHQIDIKGAY 794          
BLAST of mRNA_F-distichus_contig99582.19400.1 vs. uniprot
Match: A0A6G0WKF3_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WKF3_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 3.310e-13
Identity = 37/121 (30.58%), Postives = 67/121 (55.37%), Query Frame = 1
Query:    4 LPPEPQSLRQAMESPEWECWQAAEKPEIGGLISRGVWTNCPCPKEKVVLGTKQLYSRESGERREVVKHKCRFFTQSFRQIKGLHCEDSSSPTPAAASIRMALATAAVIDMELRHIDFKQAY 366
            L P PQS ++AM SP+W  W+AAE+ E+  L++   WT    P ++ ++  +  Y+R++     +++ K R+  + F Q++G+  ++SSS      S+R  LA A   ++ +   D   AY
Sbjct:  309 LHPVPQSHKEAMASPDWRNWKAAEEAEVAQLLALKTWTVAKPPVDRKIIRGRWTYARKTDAAGNIIRWKARWVLKGFNQVEGVDYDESSSNVIKMTSVRAILAVATARNLVIEQADAINAY 429          
BLAST of mRNA_F-distichus_contig99582.19400.1 vs. uniprot
Match: UPI0005F450C0 (MAGUK p55 subfamily member 6-like n=1 Tax=Vollenhovia emeryi TaxID=411798 RepID=UPI0005F450C0)

HSP 1 Score: 74.3 bits (181), Expect = 4.710e-13
Identity = 40/119 (33.61%), Postives = 63/119 (52.94%), Query Frame = 1
Query:   10 PEPQSLRQAMESPEWECWQAAEKPEIGGLISRGVWTNCPCPKEKVVLGTKQLYSRESGERREVVKHKCRFFTQSFRQIKGLHCEDSSSPTPAAASIRMALATAAVIDMELRHIDFKQAY 366
            P+P +L++A+ES E + WQ A+K E   L     W     P  +  L  K ++  +     +V ++K R     F QI+GL  E++ SP    ASIR+ LA A  +D+E+ H+D   A+
Sbjct:   88 PDPITLQEAIESEECDSWQQAKKSEFNALTENKTWKLVDLPPGRKPLKNKWVFKTKRDSNNDVERYKARLVVIGFSQIRGLDYEETYSPVVRYASIRLLLALAVKMDLEVDHLDVVTAF 206          
BLAST of mRNA_F-distichus_contig99582.19400.1 vs. uniprot
Match: A0A0J7NHJ8_LASNI (Gag-pol polyprotein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7NHJ8_LASNI)

HSP 1 Score: 72.8 bits (177), Expect = 1.820e-12
Identity = 39/120 (32.50%), Postives = 64/120 (53.33%), Query Frame = 1
Query:    7 PPEPQSLRQAMESPEWECWQAAEKPEIGGLISRGVWTNCPCPKEKVVLGTKQLYSRESGERREVVKHKCRFFTQSFRQIKGLHCEDSSSPTPAAASIRMALATAAVIDMELRHIDFKQAY 366
            P +P +L++A+ES   + WQ A + E   L+    W     P  +  L  K ++  +     +V ++K R   + F Q+KGL  E++ SP    ASIR+ LA AA +D+E+ H+D   A+
Sbjct:  785 PDDPITLQEALESEACDSWQQAMRNEYDALLENKTWDLVDLPPGRKPLKCKWVFKTKRDSNNDVERYKARLVVKGFSQVKGLDYEETYSPVVRYASIRILLALAAKLDLEVDHLDVVTAF 904          
BLAST of mRNA_F-distichus_contig99582.19400.1 vs. uniprot
Match: A0A6A4ZD37_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZD37_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.160e-11
Identity = 43/120 (35.83%), Postives = 63/120 (52.50%), Query Frame = 1
Query:   10 PEPQSLRQAMESPEWECWQAAEKPEIGGLISRGVWT-NCPCPKEKVVLGTKQLYSRESGERREVVKHKCRFFTQSFRQIKGLHCEDSSSPTPAAASIRMALATAAVIDMELRHIDFKQAY 366
            P P S R+AM SP+W  W+AAE+ E+  L++   WT   P P  KV+ G +  Y+R++     V++ K R+  + F QI G+  ++SSS      SIR   A A    M +   D   AY
Sbjct:  456 PVPNSHREAMASPDWRHWKAAEEAEVAQLLALKCWTVQTPPPGRKVIQG-RWTYARKTDAEGNVIRWKARWVLKGFSQIAGVDYDESSSNVIKMTSIRAICAVATSRRMVIEQADAVNAY 574          
BLAST of mRNA_F-distichus_contig99582.19400.1 vs. uniprot
Match: E2M0C0_MONPE (Integrase catalytic domain-containing protein n=1 Tax=Moniliophthora perniciosa (strain FA553 / isolate CP02) TaxID=554373 RepID=E2M0C0_MONPE)

HSP 1 Score: 69.3 bits (168), Expect = 2.950e-11
Identity = 38/117 (32.48%), Postives = 61/117 (52.14%), Query Frame = 1
Query:   16 PQSLRQAMESPEWECWQAAEKPEIGGLISRGVWTNCPCPKEKVVLGTKQLYSRESGERREVVKHKCRFFTQSFRQIKGLHCEDSSSPTPAAASIRMALATAAVIDMELRHIDFKQAY 366
            PQ+L QA+ SPE + W  A + E+  L     +   P P+++   GTK +++ +  E+   V+H+ R   Q F QI G+   D+ +P     SIR     AA +D E+  +D K A+
Sbjct:  583 PQTLAQALNSPERKYWVEAIEEELRRLAGTETYELVPRPEDRKPTGTKWVFNIKRDEQGRTVEHRARLVAQGFSQIPGVDFWDTYAPVARIESIRAIFGLAATLDWEIHVVDVKSAF 699          
BLAST of mRNA_F-distichus_contig99582.19400.1 vs. uniprot
Match: A0A6G0WTM0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WTM0_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.040e-10
Identity = 36/121 (29.75%), Postives = 65/121 (53.72%), Query Frame = 1
Query:    4 LPPEPQSLRQAMESPEWECWQAAEKPEIGGLISRGVWTNCPCPKEKVVLGTKQLYSRESGERREVVKHKCRFFTQSFRQIKGLHCEDSSSPTPAAASIRMALATAAVIDMELRHIDFKQAY 366
            L P PQS ++AM SP+W  W+AAE+ E+  L++   W     P ++ V+  +  Y+R++     +++ K R+  + F Q +G+  +++SS      S+R  LA A   ++ +   D   AY
Sbjct:  995 LNPVPQSHKEAMASPDWRHWKAAEEAEVAQLLALKTWVVAKPPDDRKVIRGRWTYARKTDAMGNIIRWKARWVLKGFIQDEGVDYDETSSNVIKMTSMRAILAIATARNLVIEQADAINAY 1115          
BLAST of mRNA_F-distichus_contig99582.19400.1 vs. uniprot
Match: V2XQZ8_MONRO (Gag-pol polyprotein n=1 Tax=Moniliophthora roreri (strain MCA 2997) TaxID=1381753 RepID=V2XQZ8_MONRO)

HSP 1 Score: 63.9 bits (154), Expect = 2.300e-9
Identity = 36/117 (30.77%), Postives = 58/117 (49.57%), Query Frame = 1
Query:   16 PQSLRQAMESPEWECWQAAEKPEIGGLISRGVWTNCPCPKEKVVLGTKQLYSRESGERREVVKHKCRFFTQSFRQIKGLHCEDSSSPTPAAASIRMALATAAVIDMELRHIDFKQAY 366
            PQ+L QA+ SPE + W  A + E+  L     +   PCP+ +   GTK +++ +  E+  +V+H  R   Q F QI G+   D+        SI      AA ++ E+  +D K A+
Sbjct:  868 PQTLAQALNSPERKYWVEAIEEELRHLAGTETYELVPCPESRKPTGTKWVFNIKRNEQGHIVEHHARLVAQGFSQIPGVDFWDTYVLVARIESIHAISGLAATLNWEIHVVDVKSAF 984          
BLAST of mRNA_F-distichus_contig99582.19400.1 vs. uniprot
Match: A0A250XS43_9CHLO (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XS43_9CHLO)

HSP 1 Score: 63.5 bits (153), Expect = 2.900e-9
Identity = 32/118 (27.12%), Postives = 59/118 (50.00%), Query Frame = 1
Query:   13 EPQSLRQAMESPEWECWQAAEKPEIGGLISRGVWTNCPCPKEKVVLGTKQLYSRESGERREVVKHKCRFFTQSFRQIKGLHCEDSSSPTPAAASIRMALATAAVIDMELRHIDFKQAY 366
            EP +L +AM+SP+ E W+ A   E+  L+  G W    CP    ++  K ++  +      + + K R   + F+Q +G+   +  +P     ++R  L+  A  D+EL+ +D K A+
Sbjct:  149 EPDTLTEAMDSPQAEEWRLAMTEEMASLMKNGTWKLVDCPLGVTLVPVKWVFKVKRDSSGNIERFKARLVAKGFKQREGIDYHEVYAPVSKHTTLRALLSLVATEDLELQQLDVKTAF 266          
BLAST of mRNA_F-distichus_contig99582.19400.1 vs. uniprot
Match: A0A0J7K814_LASNI (Rna-dependent dna polymerase n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K814_LASNI)

HSP 1 Score: 63.5 bits (153), Expect = 3.120e-9
Identity = 31/115 (26.96%), Postives = 58/115 (50.43%), Query Frame = 1
Query:   22 SLRQAMESPEWECWQAAEKPEIGGLISRGVWTNCPCPKEKVVLGTKQLYSRESGERREVVKHKCRFFTQSFRQIKGLHCEDSSSPTPAAASIRMALATAAVIDMELRHIDFKQAY 366
            S + A+  P+ + W  A   E+  ++++  W+    P+ + ++G++     +  E  ++ + K R   + + Q  GL    + +P     SIRM +A AA +DME+ HID   AY
Sbjct:  889 STKSALHGPDSDDWYRAMSEEVKSILNKETWSIVNRPRNRSIVGSRFFLRNKYAEDGKIERRKARIVAKGYSQRPGLDFHATFAPVARMGSIRMIIALAAQLDMEIHHIDVTTAY 1003          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig99582.19400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A165BJT7_EXIGL3.050e-1636.44Uncharacterized protein (Fragment) n=2 Tax=Exidia ... [more]
A0A6G0WKF3_9STRA3.310e-1330.58Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI0005F450C04.710e-1333.61MAGUK p55 subfamily member 6-like n=1 Tax=Vollenho... [more]
A0A0J7NHJ8_LASNI1.820e-1232.50Gag-pol polyprotein n=1 Tax=Lasius niger TaxID=677... [more]
A0A6A4ZD37_9STRA1.160e-1135.83Integrase catalytic domain-containing protein n=1 ... [more]
E2M0C0_MONPE2.950e-1132.48Integrase catalytic domain-containing protein n=1 ... [more]
A0A6G0WTM0_9STRA1.040e-1029.75Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
V2XQZ8_MONRO2.300e-930.77Gag-pol polyprotein n=1 Tax=Moniliophthora roreri ... [more]
A0A250XS43_9CHLO2.900e-927.12Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0J7K814_LASNI3.120e-926.96Rna-dependent dna polymerase n=1 Tax=Lasius niger ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig99582contigF-distichus_contig99582:1494..1862 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score82.4
Seed ortholog evalue1.6e-13
Seed eggNOG ortholog126957.SMAR002312-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,3BI7U@33208,3CTS1@33213,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons1
Model size369
Cds size369
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931177.8437397-CDS-F-distichus_contig99582:1493..18621622931177.8437397-CDS-F-distichus_contig99582:1493..1862Fucus distichus monoicousCDSF-distichus_contig99582 1494..1862 +
1690886192.2492414-CDS-F-distichus_contig99582:1493..18621690886192.2492414-CDS-F-distichus_contig99582:1493..1862Fucus distichus monoicousCDSF-distichus_contig99582 1494..1862 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig99582.19400.1prot_F-distichus_contig99582.19400.1Fucus distichus monoicouspolypeptideF-distichus_contig99582 1494..1862 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig99582.19400.1

>prot_F-distichus_contig99582.19400.1 ID=prot_F-distichus_contig99582.19400.1|Name=mRNA_F-distichus_contig99582.19400.1|organism=Fucus distichus monoicous|type=polypeptide|length=123bp
DLPPEPQSLRQAMESPEWECWQAAEKPEIGGLISRGVWTNCPCPKEKVVL
GTKQLYSRESGERREVVKHKCRFFTQSFRQIKGLHCEDSSSPTPAAASIR
MALATAAVIDMELRHIDFKQAY*
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mRNA from alignment at F-distichus_contig99582:1494..1862+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig99582.19400.1 ID=mRNA_F-distichus_contig99582.19400.1|Name=mRNA_F-distichus_contig99582.19400.1|organism=Fucus distichus monoicous|type=mRNA|length=369bp|location=Sequence derived from alignment at F-distichus_contig99582:1494..1862+ (Fucus distichus monoicous)
GACCTACCCCCCGAGCCTCAAAGTCTCCGCCAAGCCATGGAGTCGCCAGA ATGGGAATGCTGGCAAGCGGCAGAGAAACCAGAGATAGGTGGCCTCATCA GCAGAGGAGTCTGGACGAATTGCCCATGCCCTAAGGAAAAGGTAGTGCTA GGCACCAAGCAGCTGTACAGCCGTGAATCTGGGGAACGCCGGGAAGTGGT GAAACACAAGTGCAGATTCTTCACCCAGAGTTTCCGTCAAATTAAAGGGC TCCACTGCGAAGACTCGTCTTCCCCTACACCCGCGGCAGCTAGCATTCGC ATGGCACTCGCGACCGCGGCGGTGATAGACATGGAGCTGCGCCACATCGA CTTCAAACAAGCTTACTAG
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Coding sequence (CDS) from alignment at F-distichus_contig99582:1494..1862+

>mRNA_F-distichus_contig99582.19400.1 ID=mRNA_F-distichus_contig99582.19400.1|Name=mRNA_F-distichus_contig99582.19400.1|organism=Fucus distichus monoicous|type=CDS|length=738bp|location=Sequence derived from alignment at F-distichus_contig99582:1494..1862+ (Fucus distichus monoicous)
GACCTACCCCCCGAGCCTCAAAGTCTCCGCCAAGCCATGGAGTCGCCAGA
ATGGGAATGCTGGCAAGCGGCAGAGAAACCAGAGATAGGTGGCCTCATCA
GCAGAGGAGTCTGGACGAATTGCCCATGCCCTAAGGAAAAGGTAGTGCTA
GGCACCAAGCAGCTGTACAGCCGTGAATCTGGGGAACGCCGGGAAGTGGT
GAAACACAAGTGCAGATTCTTCACCCAGAGTTTCCGTCAAATTAAAGGGC
TCCACTGCGAAGACTCGTCTTCCCCTACACCCGCGGCAGCTAGCATTCGC
ATGGCACTCGCGACCGCGGCGGTGATAGACATGGAGCTGCGCCACATCGA
CTTCAAACAAGCTTACTAGGACCTACCCCCCGAGCCTCAAAGTCTCCGCC
AAGCCATGGAGTCGCCAGAATGGGAATGCTGGCAAGCGGCAGAGAAACCA
GAGATAGGTGGCCTCATCAGCAGAGGAGTCTGGACGAATTGCCCATGCCC
TAAGGAAAAGGTAGTGCTAGGCACCAAGCAGCTGTACAGCCGTGAATCTG
GGGAACGCCGGGAAGTGGTGAAACACAAGTGCAGATTCTTCACCCAGAGT
TTCCGTCAAATTAAAGGGCTCCACTGCGAAGACTCGTCTTCCCCTACACC
CGCGGCAGCTAGCATTCGCATGGCACTCGCGACCGCGGCGGTGATAGACA
TGGAGCTGCGCCACATCGACTTCAAACAAGCTTACTAG
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