mRNA_F-distichus_contig99536.19397.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig99536.19397.1
Unique NamemRNA_F-distichus_contig99536.19397.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig99536.19397.1 vs. uniprot
Match: D7G5X9_ECTSI (D27-like_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5X9_ECTSI)

HSP 1 Score: 199 bits (507), Expect = 4.660e-63
Identity = 90/108 (83.33%), Postives = 98/108 (90.74%), Query Frame = 1
Query:    1 FLVGPNNMDLRRDKTRGGVFVERCRFLEETNCKGLCTNMCKVPTERFFDETLGMRMAMEPNFDTYECRLSFGLEASPLEEDDTVPRGCLSRCSCKSLGAKVATTCSKQ 324
            FLVGPN +D R+D T GGVFVERCRFLEETNCKGLCTNMCK+PTERFF+ETLG+ MAMEP+FDTYECRLSFGLE+  +EEDDTVPRGCLS CSCK LGA VATTCSKQ
Sbjct:  113 FLVGPNKLDARKDDTPGGVFVERCRFLEETNCKGLCTNMCKIPTERFFEETLGLTMAMEPDFDTYECRLSFGLESPAMEEDDTVPRGCLSGCSCKELGAVVATTCSKQ 220          
BLAST of mRNA_F-distichus_contig99536.19397.1 vs. uniprot
Match: D7G4X4_ECTSI (D27-like_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4X4_ECTSI)

HSP 1 Score: 199 bits (507), Expect = 5.090e-62
Identity = 90/108 (83.33%), Postives = 98/108 (90.74%), Query Frame = 1
Query:    1 FLVGPNNMDLRRDKTRGGVFVERCRFLEETNCKGLCTNMCKVPTERFFDETLGMRMAMEPNFDTYECRLSFGLEASPLEEDDTVPRGCLSRCSCKSLGAKVATTCSKQ 324
            FLVGPN +D R+D T GGVFVERCRFLEETNCKGLCTNMCK+PTERFF+ETLG+ MAMEP+FDTYECRLSFGLE+  +EEDDTVPRGCLS CSCK LGA VATTCSKQ
Sbjct:  192 FLVGPNKLDARKDDTPGGVFVERCRFLEETNCKGLCTNMCKIPTERFFEETLGLTMAMEPDFDTYECRLSFGLESPAMEEDDTVPRGCLSGCSCKELGAVVATTCSKQ 299          
BLAST of mRNA_F-distichus_contig99536.19397.1 vs. uniprot
Match: A0A835Z2W0_9STRA (D27-like_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2W0_9STRA)

HSP 1 Score: 173 bits (439), Expect = 3.370e-52
Identity = 76/108 (70.37%), Postives = 90/108 (83.33%), Query Frame = 1
Query:    1 FLVGPNNMDLRRDKTRGGVFVERCRFLEETNCKGLCTNMCKVPTERFFDETLGMRMAMEPNFDTYECRLSFGLEASPLEEDDTVPRGCLSRCSCKSLGAKVATTCSKQ 324
            FLVGPN +D+R D T GGVFVERCRFLEETNCKGLCTNMCK+PT++FF +TLGM MAMEP+FDTYECRLSFGL   P+++D  VP+GCL  CS  +LGA++   CSKQ
Sbjct:  155 FLVGPNKLDMRSDGTAGGVFVERCRFLEETNCKGLCTNMCKLPTQKFFKDTLGMDMAMEPDFDTYECRLSFGLTPLPMDQDPKVPKGCLQGCSSTALGAEIERVCSKQ 262          
BLAST of mRNA_F-distichus_contig99536.19397.1 vs. uniprot
Match: W7TNA9_9STRA (D27-like_C domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNA9_9STRA)

HSP 1 Score: 141 bits (356), Expect = 1.180e-39
Identity = 60/93 (64.52%), Postives = 75/93 (80.65%), Query Frame = 1
Query:    1 FLVGPNNMDLRRDKTRGGVFVERCRFLEETNCKGLCTNMCKVPTERFFDETLGMRMAMEPNFDTYECRLSFGLEASPLEEDDTVPRGCLSRCS 279
            FLVGPN  D+R D   GGV+ ERCRFLEETNCKGLC +MCK+PT++FF ETLG+ M M P++DTYECRLSFGL    +E+D ++P+GCL+ CS
Sbjct:  154 FLVGPNRYDVRDDGQAGGVYAERCRFLEETNCKGLCLHMCKLPTQQFFKETLGLDMTMTPDYDTYECRLSFGLAPKAVEDDPSIPKGCLTGCS 246          
BLAST of mRNA_F-distichus_contig99536.19397.1 vs. uniprot
Match: A0A0K6S9X6_9ALVE (D27-like_C domain-containing protein n=2 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0K6S9X6_9ALVE)

HSP 1 Score: 134 bits (338), Expect = 2.900e-36
Identity = 63/111 (56.76%), Postives = 75/111 (67.57%), Query Frame = 1
Query:    1 FLVGPNNMDLRRDKTRGGVFVERCRFLEETNCKGLCTNMCKVPTERFFDETLGMRMAMEPNFDTYECRLSFGLEASPLEEDDTVPRGCLSRCSCKS----LGAKVATTCSK 321
            FLVGP    LR D+  GG +VERCRFL ET CKGLC NMCK PTERFF +T+G+ + M P+F+T EC LSFGL   PLEED+TVP GCL  C+        G   A +C+K
Sbjct:  194 FLVGPTRWSLREDEQLGGCYVERCRFLAETGCKGLCVNMCKRPTERFFADTMGLPLTMRPDFETCECTLSFGLVPEPLEEDETVPSGCLGGCTMAGGLAEKGLVSACSCAK 304          
BLAST of mRNA_F-distichus_contig99536.19397.1 vs. uniprot
Match: A0A7S0AGM3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AGM3_9STRA)

HSP 1 Score: 117 bits (293), Expect = 2.010e-31
Identity = 53/99 (53.54%), Postives = 67/99 (67.68%), Query Frame = 1
Query:    1 FLVGPNNMDLRRDKTR--GGVFVERCRFLEETNCKGLCTNMCKVPTERFFDETLGMRMAMEPNFDTYECRLSFGLEASPLEEDDTVPRGCLSRCSCKSL 291
            FLVG   +  R +K    GGV V RCR LE + CKG+C  MCKVPT+RFF E  G+ + M PNF+T EC+L FGLE  P+E+D T+P GCL+RC   +L
Sbjct:   50 FLVGEMTLTTRNEKDLRGGGVLVRRCRVLEGSGCKGICAKMCKVPTQRFFAEAWGVPLTMSPNFETGECQLVFGLEPQPIEDDPTIPPGCLTRCPASTL 148          
BLAST of mRNA_F-distichus_contig99536.19397.1 vs. uniprot
Match: A0A8J6CH10_DIALT (D27-like_C domain-containing protein n=3 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CH10_DIALT)

HSP 1 Score: 117 bits (294), Expect = 1.830e-29
Identity = 55/108 (50.93%), Postives = 75/108 (69.44%), Query Frame = 1
Query:    1 FLVGPNNMDLRRDKTRGGVFVERCRFLEETNCKGLCTNMCKVPTERFFDETLGMRMAMEPNFDTYECRLSFGLEASPLEEDDTVPRGCLSRC-SCKSLG-AKVATTCS 318
            FLVGP+  + R D   GG+ VE+CRFL+E+ CKGLC + CK+P +RFF E LG+ + + PNF+T EC+ SFG E  P+E+D ++P GCL+ C S K+L  AK    CS
Sbjct:  266 FLVGPSTPNYRADGELGGLVVEKCRFLQESGCKGLCVHQCKLPAQRFFAEDLGLPLTVSPNFETQECQWSFGEEPLPVEQDVSLPTGCLAGCPSRKALSEAKACNKCS 373          
BLAST of mRNA_F-distichus_contig99536.19397.1 vs. uniprot
Match: A0A7S0DRR4_9EUKA (Hypothetical protein n=2 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DRR4_9EUKA)

HSP 1 Score: 118 bits (295), Expect = 5.360e-29
Identity = 55/107 (51.40%), Postives = 71/107 (66.36%), Query Frame = 1
Query:    1 FLVGPNNMDLRRD-KTRGGVFVERCRFLEETNCKGLCTNMCKVPTERFFDETLGMRMAMEPNFDTYECRLSFGLEASPLEEDDTVPRGCLSRC-SCKSLGAKVATTC 315
            FLVGP+ ++  RD +   GV V++CRFL ET CKGLC NMCK+PT+RFF + +G  M M PNFDT +C LS+G+   PLEED  VP+ CL  C +   +G     TC
Sbjct:   40 FLVGPSGLNTTRDGRPFQGVTVQKCRFLAETGCKGLCVNMCKIPTQRFFQDEMGFPMEMRPNFDTCQCTLSYGITPMPLEEDVDVPQACLVGCQNLLQMGEASTDTC 146          
BLAST of mRNA_F-distichus_contig99536.19397.1 vs. uniprot
Match: A0A1E7FNX2_9STRA (D27-like_C domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FNX2_9STRA)

HSP 1 Score: 109 bits (273), Expect = 1.630e-28
Identity = 49/104 (47.12%), Postives = 73/104 (70.19%), Query Frame = 1
Query:    1 FLVGPNNMDLRRDKTRGGVFVERCRFLEETNCKGLCTNMCKVPTERFFDETLGMRMAMEPNFDTYECRLSFGLEASPLEEDDTVPRGCLSRC-SCKSLGAKVAT 309
            FLVGP+  + R+D  RGG+ VE+C+FL+E+ CKG+C + CK+PT++FF + LG+ + + PNF T EC+ SFG    P  ED++ P+GCL  C S K++ A  +T
Sbjct:   37 FLVGPSYPNRRKDGKRGGLVVEKCKFLQESGCKGICLHDCKLPTQQFFQDELGLPLTVIPNFATQECQWSFGETPVPPSEDESFPKGCLVGCESRKAIAASGST 140          
BLAST of mRNA_F-distichus_contig99536.19397.1 vs. uniprot
Match: A0A7S2G560_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G560_9STRA)

HSP 1 Score: 109 bits (273), Expect = 3.900e-28
Identity = 51/108 (47.22%), Postives = 74/108 (68.52%), Query Frame = 1
Query:    1 FLVGPNNMDLRRDKTRGGVFVERCRFLEETNCKGLCTNMCKVPTERFFDETLGMRMAMEPNFDTYECRLSFGLEASPLEEDDTVPRGCL----SRCSCKSLGAKVATT 312
            FLVGP+ ++ R D   GG+ V++C+FL+E+NCKG+C N CK+P ++ F E LG+ + + PNF+T EC+ SFG  A P E+D T P+GC+    SR + K L A VA +
Sbjct:   66 FLVGPSRVNFRSDGQPGGLVVDKCKFLQESNCKGMCLNSCKLPAQQLFSE-LGLPLRVLPNFETQECQWSFGEAAPPPEDDPTWPQGCIAGCTSRAAMKELSAGVAAS 172          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig99536.19397.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5X9_ECTSI4.660e-6383.33D27-like_C domain-containing protein n=1 Tax=Ectoc... [more]
D7G4X4_ECTSI5.090e-6283.33D27-like_C domain-containing protein n=2 Tax=Ectoc... [more]
A0A835Z2W0_9STRA3.370e-5270.37D27-like_C domain-containing protein n=1 Tax=Tribo... [more]
W7TNA9_9STRA1.180e-3964.52D27-like_C domain-containing protein n=2 Tax=Monod... [more]
A0A0K6S9X6_9ALVE2.900e-3656.76D27-like_C domain-containing protein n=2 Tax=Chrom... [more]
A0A7S0AGM3_9STRA2.010e-3153.54Hypothetical protein (Fragment) n=1 Tax=Minutocell... [more]
A0A8J6CH10_DIALT1.830e-2950.93D27-like_C domain-containing protein n=3 Tax=Diacr... [more]
A0A7S0DRR4_9EUKA5.360e-2951.40Hypothetical protein n=2 Tax=Amorphochlora amoebif... [more]
A0A1E7FNX2_9STRA1.630e-2847.12D27-like_C domain-containing protein n=1 Tax=Fragi... [more]
A0A7S2G560_9STRA3.900e-2847.22Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig99536contigF-distichus_contig99536:906..1740 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score184.5
Seed ortholog evalue2.5e-44
Seed eggNOG ortholog2880.D7G4X4
Hectar predicted targeting categoryother localisation
EggNOG OGs2CUCH@1,2RKQQ@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size327
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig99536.19397.1prot_F-distichus_contig99536.19397.1Fucus distichus monoicouspolypeptideF-distichus_contig99536 927..1740 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931177.4414546-UTR-F-distichus_contig99536:905..9261622931177.4414546-UTR-F-distichus_contig99536:905..926Fucus distichus monoicousUTRF-distichus_contig99536 906..926 +
1690886192.0754402-UTR-F-distichus_contig99536:905..9261690886192.0754402-UTR-F-distichus_contig99536:905..926Fucus distichus monoicousUTRF-distichus_contig99536 906..926 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931177.468728-CDS-F-distichus_contig99536:926..10041622931177.468728-CDS-F-distichus_contig99536:926..1004Fucus distichus monoicousCDSF-distichus_contig99536 927..1004 +
1690886192.0879362-CDS-F-distichus_contig99536:926..10041690886192.0879362-CDS-F-distichus_contig99536:926..1004Fucus distichus monoicousCDSF-distichus_contig99536 927..1004 +
1622931177.488333-CDS-F-distichus_contig99536:1512..17401622931177.488333-CDS-F-distichus_contig99536:1512..1740Fucus distichus monoicousCDSF-distichus_contig99536 1513..1740 +
1690886192.0976737-CDS-F-distichus_contig99536:1512..17401690886192.0976737-CDS-F-distichus_contig99536:1512..1740Fucus distichus monoicousCDSF-distichus_contig99536 1513..1740 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig99536.19397.1

>prot_F-distichus_contig99536.19397.1 ID=prot_F-distichus_contig99536.19397.1|Name=mRNA_F-distichus_contig99536.19397.1|organism=Fucus distichus monoicous|type=polypeptide|length=102bp
MDLRRDKTRGGVFVERCRFLEETNCKGLCTNMCKVPTERFFDETLGMRMA
MEPNFDTYECRLSFGLEASPLEEDDTVPRGCLSRCSCKSLGAKVATTCSK
Q*
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mRNA from alignment at F-distichus_contig99536:906..1740+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig99536.19397.1 ID=mRNA_F-distichus_contig99536.19397.1|Name=mRNA_F-distichus_contig99536.19397.1|organism=Fucus distichus monoicous|type=mRNA|length=835bp|location=Sequence derived from alignment at F-distichus_contig99536:906..1740+ (Fucus distichus monoicous)
TTCCTCGTGGGGCCGAACAACATGGATCTGCGTAGAGACAAAACCCGAGG AGGCGTTTTCGTGGAGAGGTGCCGATTCCTGGAGGAAACCAACTGCAAGG TATGTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTAAGTGTGTAC TGTAGTGCTATGTGCATATCCCTTTCACTTACTTACTGTGCGCGAAGTTG GGTTTAACCTCTAGATCTATACTTCTCTGCGGACAAATGCCGCCGCATGG GCTCCGACTCTTGTCCCTTTCTGCGATTTTTCGGCCGGAAAATATAGACA CGTCGAGTAGAACAGTAGAGGAAAGTACAGGTATGCCTTTCCTTTCAAAA CACGTATTTCGTCAGTTCCATGCAATTTGATCTTCGTCGTTTTTTCAAGT CTTGTTGTGCGCGAAAATCCTCCAGTTATGCTCCAAAAAATATGCCTCCA GACTACCATACGTTTTATTGGCCTGTAGAAGTCGCATCCTCTATACACAG GCCACTTCATCGCCTCGAACCCTCCGCCCTTCCATTTGTACGAAAGCTAC AAAGACATGTATCTGTATTTATGTCGCGTGTAACGGCGAAGCGCTTGTCC TTGGCAGGGGCTGTGCACCAACATGTGCAAGGTCCCCACCGAGCGGTTCT TTGACGAGACGTTGGGAATGAGGATGGCGATGGAGCCAAACTTCGATACG TACGAGTGTCGGCTCAGCTTCGGCCTGGAGGCGTCTCCGTTAGAAGAAGA CGACACCGTGCCGAGAGGGTGCCTCTCGCGTTGCAGCTGCAAGAGCCTGG GGGCGAAGGTCGCCACCACTTGTTCGAAGCAATGA
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Coding sequence (CDS) from alignment at F-distichus_contig99536:906..1740+

>mRNA_F-distichus_contig99536.19397.1 ID=mRNA_F-distichus_contig99536.19397.1|Name=mRNA_F-distichus_contig99536.19397.1|organism=Fucus distichus monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at F-distichus_contig99536:906..1740+ (Fucus distichus monoicous)
ATGGATCTGCGTAGAGACAAAACCCGAGGAGGCGTTTTCGTGGAGAGGTG
CCGATTCCTGGAGGAAACCAACTGCAAGATGGATCTGCGTAGAGACAAAA
CCCGAGGAGGCGTTTTCGTGGAGAGGTGCCGATTCCTGGAGGAAACCAAC
TGCAAGGGGCTGTGCACCAACATGTGCAAGGTCCCCACCGAGCGGTTCTT
TGACGAGACGTTGGGAATGAGGATGGCGATGGAGCCAAACTTCGATACGT
ACGAGTGTCGGCTCAGCTTCGGCCTGGAGGCGTCTCCGTTAGAAGAAGAC
GACACCGTGCCGAGAGGGTGCCTCTCGCGTTGCAGCTGCAAGAGCCTGGG
GGCGAAGGTCGCCACCACTTGTTCGAAGCAATGAGGGCTGTGCACCAACA
TGTGCAAGGTCCCCACCGAGCGGTTCTTTGACGAGACGTTGGGAATGAGG
ATGGCGATGGAGCCAAACTTCGATACGTACGAGTGTCGGCTCAGCTTCGG
CCTGGAGGCGTCTCCGTTAGAAGAAGACGACACCGTGCCGAGAGGGTGCC
TCTCGCGTTGCAGCTGCAAGAGCCTGGGGGCGAAGGTCGCCACCACTTGT
TCGAAGCAATGA
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