mRNA_F-distichus_contig9950.19395.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig9950.19395.1
Unique NamemRNA_F-distichus_contig9950.19395.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig9950.19395.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig9950contigF-distichus_contig9950:9485..11047 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size342
Cds size339
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig9950.19395.1prot_F-distichus_contig9950.19395.1Fucus distichus monoicouspolypeptideF-distichus_contig9950 9485..11045 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931177.29165-CDS-F-distichus_contig9950:9484..95711622931177.29165-CDS-F-distichus_contig9950:9484..9571Fucus distichus monoicousCDSF-distichus_contig9950 9485..9571 +
1690886192.024097-CDS-F-distichus_contig9950:9484..95711690886192.024097-CDS-F-distichus_contig9950:9484..9571Fucus distichus monoicousCDSF-distichus_contig9950 9485..9571 +
1622931177.3156476-CDS-F-distichus_contig9950:9906..100921622931177.3156476-CDS-F-distichus_contig9950:9906..10092Fucus distichus monoicousCDSF-distichus_contig9950 9907..10092 +
1690886192.0382638-CDS-F-distichus_contig9950:9906..100921690886192.0382638-CDS-F-distichus_contig9950:9906..10092Fucus distichus monoicousCDSF-distichus_contig9950 9907..10092 +
1622931177.3318071-CDS-F-distichus_contig9950:10979..110451622931177.3318071-CDS-F-distichus_contig9950:10979..11045Fucus distichus monoicousCDSF-distichus_contig9950 10980..11045 +
1690886192.0495114-CDS-F-distichus_contig9950:10979..110451690886192.0495114-CDS-F-distichus_contig9950:10979..11045Fucus distichus monoicousCDSF-distichus_contig9950 10980..11045 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig9950.19395.1

>prot_F-distichus_contig9950.19395.1 ID=prot_F-distichus_contig9950.19395.1|Name=mRNA_F-distichus_contig9950.19395.1|organism=Fucus distichus monoicous|type=polypeptide|length=113bp
TRNIDGEQEALRRLSDSAFRQAFNKGMFWFRVGSEVFVGPIILPSGVPAT
NIPPMVVAFLNDAPPADPDAGQPREFGVAQTVAKKVEYELKDIETGVQLV
RKKHSSRNSRSVT
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mRNA from alignment at F-distichus_contig9950:9485..11047+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig9950.19395.1 ID=mRNA_F-distichus_contig9950.19395.1|Name=mRNA_F-distichus_contig9950.19395.1|organism=Fucus distichus monoicous|type=mRNA|length=1563bp|location=Sequence derived from alignment at F-distichus_contig9950:9485..11047+ (Fucus distichus monoicous)
ACTAGGAACATCGACGGCGAGCAGGAGGCGCTCCGGAGGCTGTCCGACTC
GGCTTTTAGGCAAGCCTTCAACAAGGGGATGTTCTGGGTGCGTGCGTGTG
GTTTGCATTCATAAGACATACACCATTTGCTACTAGGGACTGTGGTTTGT
CCTCACAAACGACCACGTAACCGGGAACACAACAGACATAAGAAGGCCTT
TTTGCCATTATTTGTTTGGGTGACCATGCGGACAAACCCACACATCATAC
ATTCATCTGCGGCCGCTTCAATCAAAATGGCGTATTTATGGGTGGCATGG
GATCCTCGGATAAAAAAGCTTGTACGGATCACGACCCCCACGTTTAAATT
TCAAATTATTTACACCTGTCTCTTTCAATCCCCTTCTTGCTCTCGTCCAC
GCGCGTCGACTTCTAACGGCAGTTCCGCGTTGGGTCTGAGGTCTTCGTCG
GGCCTATTATTCTCCCCAGCGGAGTCCCGGCCACCAACATCCCTCCCATG
GTCGTGGCCTTTCTGAACGATGCCCCGCCTGCTGATCCCGACGCCGGCCA
GCCGCGAGAGTTTGGCGTCGCCCAGACAGTTGCAAAGAAAGTCGAGTACG
AACTGAAGGTGACCCAGACTTCACATCCGGCTGAAGGATTAAGCCTAGGT
TCAGTCGCTGATATTTGTCGGGTTGTTTTGCAGTTGCTGTGCTTGACTAC
GCTCGTGTACACAGTGGCAAATATCTCGTTCCACATATCCGTGACCCTTG
AGGCCTCGCTGGGGGGGCCGCCGGCTTGGTATACAGAGACTCCGCGATAG
CTTAGTGGTTCCCATATGGAAAATAACAGGCCATGCCCTCCCCTAACCCT
GATTTCTATACACTCCATGTTATCCACTCCCGAACCCCGGATGGTGAACT
TCTCTATGGATACAAACTATGGGCACACTCAGTAGAGTCCTTGTGGCGCG
AGATGATTATGGTCCAATTGATGATGATGGTCCAAATCACAGTTACAGTT
TGGATTATCATCTTCCCGGATTGGTGCAAGAACCCCTTAAAACTATTCCT
CAGTTGCGGACAGCGAGCTCGTGGCGTGTGAGTGGCGTCTCGTGCCGTCA
CTGTAGCAGCAGGTAGGCAGTTACAATTATTCTACAGCTATTCTTGTCGC
GCTAATTTAGCTGGTTTACGGGGTGATTCCCTGAGCAAAAACATCCACGT
GACCGATTCCTCAGAGTTTTATAACTCGATCGACTGCCCTAGAAGTTCCG
GAAAAATCGCTTTTCCTGGCAGTTTATTGACACCCACCCGGAAAGGCTGC
ATGTGTGCAGTTCCTTGACTTTAAATGCTTCTTCTTGTTTTTTTGTACAA
GGCCTTTTAATTTGTATTGAACTCAGCGTGGTTTTCAAGCTTCGGTCTTA
ATTGTTCGTTTTGTTGGCAGACAGCCTTTATCCGTATCGTGCTGCTGTAA
TAATCCTTTCTTCCTTGGGTGCACGGCGCCCATCAACATTGTCAGGATAT
TGAAACTGGTGTCCAGCTGGTCCGGAAAAAACACAGCAGCAGGAACTCCA
GATCCGTGACGCC
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Coding sequence (CDS) from alignment at F-distichus_contig9950:9485..11047+

>mRNA_F-distichus_contig9950.19395.1 ID=mRNA_F-distichus_contig9950.19395.1|Name=mRNA_F-distichus_contig9950.19395.1|organism=Fucus distichus monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at F-distichus_contig9950:9485..11047+ (Fucus distichus monoicous)
ACTAGGAACATCGACGGCGAGCAGGAGGCGCTCCGGAGGCTGTCCGACTC
GGCTTTTAGGCAAGCCTTCAACAAGGGGATGTTCTGGACTAGGAACATCG
ACGGCGAGCAGGAGGCGCTCCGGAGGCTGTCCGACTCGGCTTTTAGGCAA
GCCTTCAACAAGGGGATGTTCTGGTTCCGCGTTGGGTCTGAGGTCTTCGT
CGGGCCTATTATTCTCCCCAGCGGAGTCCCGGCCACCAACATCCCTCCCA
TGGTCGTGGCCTTTCTGAACGATGCCCCGCCTGCTGATCCCGACGCCGGC
CAGCCGCGAGAGTTTGGCGTCGCCCAGACAGTTGCAAAGAAAGTCGAGTA
CGAACTGAAGTTCCGCGTTGGGTCTGAGGTCTTCGTCGGGCCTATTATTC
TCCCCAGCGGAGTCCCGGCCACCAACATCCCTCCCATGGTCGTGGCCTTT
CTGAACGATGCCCCGCCTGCTGATCCCGACGCCGGCCAGCCGCGAGAGTT
TGGCGTCGCCCAGACAGTTGCAAAGAAAGTCGAGTACGAACTGAAGGATA
TTGAAACTGGTGTCCAGCTGGTCCGGAAAAAACACAGCAGCAGGAACTCC
AGATCCGTGACGGATATTGAAACTGGTGTCCAGCTGGTCCGGAAAAAACA
CAGCAGCAGGAACTCCAGATCCGTGACG
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