mRNA_F-distichus_contig99461.19390.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig99461.19390.1
Unique NamemRNA_F-distichus_contig99461.19390.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig99461.19390.1 vs. uniprot
Match: D7FUW0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUW0_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 1.000e-13
Identity = 51/86 (59.30%), Postives = 61/86 (70.93%), Query Frame = 1 
Query:    1 VRSDYAGA-SDVSQLVQRVEKSARAVSREKEEAMEALRAEEGETARLREALKQAGEVERRWKQLIEESHTLKRRLESTERIRLRQK 255
            VR DY G   DV +LV+RVE S RAVSREKE   + LR E+ +TARL+EAL Q G  +R W+ L + S  LK+RLESTERIR RQK
Sbjct:  147 VRRDYGGGVRDVGELVRRVEASTRAVSREKEHIAKILRIEKEKTARLQEALWQEGGTKREWEMLTQASSLLKQRLESTERIRNRQK 232
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig99461.19390.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUW0_ECTSI1.000e-1359.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig99461contigF-distichus_contig99461:953..1877 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size264
Cds size264
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig99461.19390.1prot_F-distichus_contig99461.19390.1Fucus distichus monoicouspolypeptideF-distichus_contig99461 953..1877 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931176.3502252-CDS-F-distichus_contig99461:952..10541622931176.3502252-CDS-F-distichus_contig99461:952..1054Fucus distichus monoicousCDSF-distichus_contig99461 953..1054 +
1690886191.5332048-CDS-F-distichus_contig99461:952..10541690886191.5332048-CDS-F-distichus_contig99461:952..1054Fucus distichus monoicousCDSF-distichus_contig99461 953..1054 +
1622931176.3704789-CDS-F-distichus_contig99461:1240..13331622931176.3704789-CDS-F-distichus_contig99461:1240..1333Fucus distichus monoicousCDSF-distichus_contig99461 1241..1333 +
1690886191.5443256-CDS-F-distichus_contig99461:1240..13331690886191.5443256-CDS-F-distichus_contig99461:1240..1333Fucus distichus monoicousCDSF-distichus_contig99461 1241..1333 +
1622931176.3886826-CDS-F-distichus_contig99461:1808..18771622931176.3886826-CDS-F-distichus_contig99461:1808..1877Fucus distichus monoicousCDSF-distichus_contig99461 1809..1877 +
1690886191.5540287-CDS-F-distichus_contig99461:1808..18771690886191.5540287-CDS-F-distichus_contig99461:1808..1877Fucus distichus monoicousCDSF-distichus_contig99461 1809..1877 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig99461.19390.1

>prot_F-distichus_contig99461.19390.1 ID=prot_F-distichus_contig99461.19390.1|Name=mRNA_F-distichus_contig99461.19390.1|organism=Fucus distichus monoicous|type=polypeptide|length=88bp
VRSDYAGASDVSQLVQRVEKSARAVSREKEEAMEALRAEEGETARLREAL
KQAGEVERRWKQLIEESHTLKRRLESTERIRLRQKVV*
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mRNA from alignment at F-distichus_contig99461:953..1877+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig99461.19390.1 ID=mRNA_F-distichus_contig99461.19390.1|Name=mRNA_F-distichus_contig99461.19390.1|organism=Fucus distichus monoicous|type=mRNA|length=925bp|location=Sequence derived from alignment at F-distichus_contig99461:953..1877+ (Fucus distichus monoicous)
GTGCGGTCGGATTACGCCGGCGCAAGCGACGTCTCGCAGCTGGTGCAGAG
GGTGGAGAAATCGGCGAGAGCGGTATCCAGGGAGAAGGAAGAAGCAATGG
AGGTGTGTGCCCGTTGCAGTCGAAAGCCGAGGAACGGTGACAGTGCTTTT
GACATGGCAGGTATGCTCCCGCGGTGCGGCTCCCGGTCTGACTGGTGTTA
CACTATCTTTTGCAAACAGTACCGCCAAATTCACTTAGCACATCTACCGC
TCTCTGTTGATCGGTTTATTTTGGTTTTCTCTGCGGAGGCGTTACGCGCG
GAGGAGGGAGAGACCGCGCGGCTCCGGGAGGCGTTGAAGCAAGCAGGCGA
GGTCGAACGCCGGTGGAAGCAGCTCATTGAGGTGAAAAAAATTGCGGTCC
CCGCCGCCACTCAGCAATCAATAGAAATGTTTTCGTCTCGAGACTGTCAT
AATAAAGTGTGTACCACCGTACAGTGAAAGCGATCGCGTCTCGGCCACCC
CTCTCCCCCCCCTCCCTCCCCCCCCCCTAGTCTCGGTGGGTTGTTCCTCA
TGATTTTGAAGCGTTCTTTCTCTTTTAGTATCCACACTTCGTATATATCT
ACTCCAGACTTGGACACTTGGCCAGGTTTGCGATAACTCGCCAAGTTGTG
AACATTCTGGGAGGGGAGCGGGCGGGGGAGACGGGGACACTCTCCACGAC
ACAGGTTAGCTCGCTGTAAAAAAACGTTGCACACGGATTAGCTCGGGGTC
GTACCCACTGCGTGGGTGGCGTATAAAATGAAAACACCCGATCTCAGGTT
CATCGATACACACCGGACAATGACGTCCCACCGTCATGGTGCGCTGCGCT
CGGCAGGAATCACACACGCTCAAGCGGCGGCTGGAGTCGACGGAGCGCAT
TCGCCTCCGTCAGAAGGTGGTGTGA
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Coding sequence (CDS) from alignment at F-distichus_contig99461:953..1877+

>mRNA_F-distichus_contig99461.19390.1 ID=mRNA_F-distichus_contig99461.19390.1|Name=mRNA_F-distichus_contig99461.19390.1|organism=Fucus distichus monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at F-distichus_contig99461:953..1877+ (Fucus distichus monoicous)
GTGCGGTCGGATTACGCCGGCGCAAGCGACGTCTCGCAGCTGGTGCAGAG
GGTGGAGAAATCGGCGAGAGCGGTATCCAGGGAGAAGGAAGAAGCAATGG
AGGTGCGGTCGGATTACGCCGGCGCAAGCGACGTCTCGCAGCTGGTGCAG
AGGGTGGAGAAATCGGCGAGAGCGGTATCCAGGGAGAAGGAAGAAGCAAT
GGAGGCGTTACGCGCGGAGGAGGGAGAGACCGCGCGGCTCCGGGAGGCGT
TGAAGCAAGCAGGCGAGGTCGAACGCCGGTGGAAGCAGCTCATTGAGGCG
TTACGCGCGGAGGAGGGAGAGACCGCGCGGCTCCGGGAGGCGTTGAAGCA
AGCAGGCGAGGTCGAACGCCGGTGGAAGCAGCTCATTGAGGAATCACACA
CGCTCAAGCGGCGGCTGGAGTCGACGGAGCGCATTCGCCTCCGTCAGAAG
GTGGTGTGAGAATCACACACGCTCAAGCGGCGGCTGGAGTCGACGGAGCG
CATTCGCCTCCGTCAGAAGGTGGTGTGA
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