mRNA_F-distichus_contig99446.19387.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig99446.19387.1
Unique NamemRNA_F-distichus_contig99446.19387.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig99446.19387.1 vs. uniprot
Match: D7G6T7_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6T7_ECTSI)

HSP 1 Score: 194 bits (492), Expect = 8.500e-56
Identity = 87/139 (62.59%), Postives = 97/139 (69.78%), Query Frame = 1
Query:    1 HDLYWALGDGGPQRDTLDHGQRTDGYYGMVVRISVPSKGSGYEIPEGNYAGPDDDPEEVLPEICANGFRNNWRCGFDRLTDELYCGDVGHNDIESIYKIECGNNYGWVRFEGSRCTEFSEDTYGPCADVDRSSFTFPYF 417
            HD+YW  GDG  Q D  +HGQ T    G V+RISVP+ G+GYEIP GN A P       LPEICA+GFRN WRC FDR TDELYCGDVGH  +E I  +ECGNNYGW RFEGSRC E  E   GPC D DRS+FTFP +
Sbjct:  254 HDIYWTTGDGASQTDPENHGQDTTNLLGSVMRISVPADGTGYEIPTGNLASP------ALPEICASGFRNPWRCSFDRETDELYCGDVGHTLVEEIDIVECGNNYGWSRFEGSRCQEAQESRDGPCLDTDRSAFTFPIY 386          
BLAST of mRNA_F-distichus_contig99446.19387.1 vs. uniprot
Match: A0A6H5JZF5_9PHAE (GSDH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZF5_9PHAE)

HSP 1 Score: 179 bits (453), Expect = 1.880e-51
Identity = 85/140 (60.71%), Postives = 94/140 (67.14%), Query Frame = 1
Query:    4 DLYWALGDGGPQRDTLDHGQRTDGYYGMVVRISVPSKGSGYEIPEGNYAGPDDDPEEVLPEICANGFRNNWRCGFDRLTDELYCGDVGHNDIESIYKIECGNNYGWVRFEGSRCTEFSEDT-YGP-CADVDRSSFTFPYF 417
            DLYW  GDGGPQ D  +H Q T    G ++RI+VPS GSGY IP GNY G        L EICA GFRN WRC FDR TD+LYCGDVGH  +E I  +ECGNNYGW RFEGSRC E  E+  Y P C  VDRS FTFP +
Sbjct:  255 DLYWTTGDGGPQTDYNNHAQDTQSMLGAMMRITVPSDGSGYTIPSGNYGG------GALDEICAIGFRNPWRCSFDRETDDLYCGDVGHTFVEEIDLVECGNNYGWSRFEGSRCQEAVENNEYNPPCDGVDRSGFTFPLY 388          
BLAST of mRNA_F-distichus_contig99446.19387.1 vs. uniprot
Match: D7G962_ECTSI (GSDH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G962_ECTSI)

HSP 1 Score: 168 bits (425), Expect = 8.610e-48
Identity = 80/140 (57.14%), Postives = 88/140 (62.86%), Query Frame = 1
Query:    4 DLYWALGDGGPQRDTLDHGQRTDGYYGMVVRISVPSKGSGYEIPEGNYAGPDDDPEEVLPEICANGFRNNWRCGFDRLTDELYCGDVGHNDIESIYKIECGNNYGWVRFEGSRCTEFSEDTY--GPCADVDRSSFTFPYF 417
            DLYW  GDGGPQ D  +H Q      G ++RISVP+ G+GY IP GNY G          EICA G RN WRC FDRL D+LYCGDVG    E I  +ECGNNYGW RFEGSRC E  +D     PC  VDRS FTFP F
Sbjct:  246 DLYWTTGDGGPQTDPFNHSQDETTMLGAMMRISVPADGTGYTIPPGNYHG-------SKAEICAIGLRNPWRCSFDRLNDDLYCGDVGQISAEEINLVECGNNYGWSRFEGSRCQEAVQDNEFNPPCDGVDRSGFTFPLF 378          
BLAST of mRNA_F-distichus_contig99446.19387.1 vs. uniprot
Match: D7G4P3_ECTSI (Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4P3_ECTSI)

HSP 1 Score: 172 bits (435), Expect = 1.420e-47
Identity = 81/140 (57.86%), Postives = 90/140 (64.29%), Query Frame = 1
Query:    4 DLYWALGDGGPQRDTLDHGQRTDGYYGMVVRISVPSKGSGYEIPEGNYAGPDDDPEEVLPEICANGFRNNWRCGFDRLTDELYCGDVGHNDIESIYKIECGNNYGWVRFEGSRCTEFSEDT-YGPCAD-VDRSSFTFPYF 417
            DLYW  GDGGPQ D  +H Q T    G ++RI+VPS G GY IP GNY G        L EICA GFRN WRC FDR  D LYCGDVGH  +E I  +ECGNNYGW RFEGSRC E  ED  + P  D + RS FTFP +
Sbjct:  318 DLYWTTGDGGPQTDPENHSQDTQTMLGAMMRITVPSDGDGYTIPSGNYGG------GALDEICAIGFRNPWRCSFDRENDNLYCGDVGHTFVEEIDLVECGNNYGWSRFEGSRCQEAVEDNEFNPACDGISRSGFTFPLY 451          
BLAST of mRNA_F-distichus_contig99446.19387.1 vs. uniprot
Match: D7FJN8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJN8_ECTSI)

HSP 1 Score: 161 bits (407), Expect = 3.350e-43
Identity = 79/142 (55.63%), Postives = 96/142 (67.61%), Query Frame = 1
Query:    1 HDLYWALGDGGPQRDTLDHGQRTDGYYGMVVRISVPSK-GSGYEIPEGN-YAGPDDDPEEVLPEICANGFRNNWRCGFDRLTDELYCGDVGHNDIESIYKIECGNNYGWVRFEGSRCTEFSEDTYGP-CADVDRSSFTFPYF 417
            H+L+WA+GD GPQ DT D GQ  +  +G ++RI V S+  SGY IP GN ++G          EICA G RN +RC FDRL D+LYCGDVGH D+ESI KIECGNNYGW +FEG RC +  ED +   C  +DRS FTFP F
Sbjct:  307 HELFWAMGDSGPQLDTFDRGQDPNILHGSIIRIGVSSEMESGYSIPSGNPFSG-----GGGRGEICAQGMRNPYRCSFDRLNDDLYCGDVGHLDVESIKKIECGNNYGWRQFEGDRCMQQIEDQFPETCEFLDRSPFTFPEF 443          
BLAST of mRNA_F-distichus_contig99446.19387.1 vs. uniprot
Match: A0A6H5KT40_9PHAE (GSDH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT40_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 1.260e-40
Identity = 72/127 (56.69%), Postives = 80/127 (62.99%), Query Frame = 1
Query:   43 DTLDHGQRTDGYYGMVVRISVPSKGSGYEIPEGNYAGPDDDPEEVLPEICANGFRNNWRCGFDRLTDELYCGDVGHNDIESIYKIECGNNYGWVRFEGSRCTEFSEDTY--GPCADVDRSSFTFPYF 417
            D  +H Q      G ++RISVPS G+GY IP GNY G          E+CA G RN WRCGFDRL D LYCGDVGH  +E I  IECGNNYGW RFEGSRC E  +D     PC  VDRS FT+P F
Sbjct:  209 DPGNHSQDETTMLGAMMRISVPSDGTGYTIPPGNYPG-------AKAEVCAIGLRNPWRCGFDRLNDNLYCGDVGHTLVEEINLIECGNNYGWSRFEGSRCQEAVQDNEFNPPCDGVDRSGFTYPLF 328          
BLAST of mRNA_F-distichus_contig99446.19387.1 vs. uniprot
Match: D7FJP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJP1_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 7.720e-40
Identity = 74/142 (52.11%), Postives = 89/142 (62.68%), Query Frame = 1
Query:    1 HDLYWALGDGGPQRDTLDHGQRTDGYYGMVVRISVPSK--GSGYEIPEGNYAGPDDDPEEVLPEICANGFRNNWRCGFDRLTDELYCGDVGHNDIESIYKIECGNNYGWVRFEGSRCTE-FSEDTYGPCADVDRSSFTFPYF 417
            HD+YW +GDGGPQ D  +  Q     +G +VRISVPS   G+GYEIP GN   P D      PEICA G RN  RC FD  TDELYCGDVG + +E +  IECG +YGW  FEGSRC + F     G C+ +DR+ + FP F
Sbjct:  322 HDIYWTVGDGGPQNDPDNKAQDMTNLHGSIVRISVPSTAMGTGYEIPAGN---PFDGANGEKPEICAWGLRNPHRCAFDTATDELYCGDVGQDRVEEVNVIECGKDYGWRMFEGSRCNDGFEGYDGGECSGLDRADYAFPVF 460          
BLAST of mRNA_F-distichus_contig99446.19387.1 vs. uniprot
Match: D7G960_ECTSI (Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G960_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 6.760e-39
Identity = 73/140 (52.14%), Postives = 79/140 (56.43%), Query Frame = 1
Query:    4 DLYWALGDGGPQRDTLDHGQRTDGYYGMVVRISVPSKGSGYEIPEGNYAGPDDDPEEVLPEICANGFRNNWRCGFDRLTDELYCGDVGHNDIESIYKIECGNNYGWVRFEGSRCTEFSEDTY--GPCADVDRSSFTFPYF 417
            DLYW  GDGGPQ D  +H Q                 G+GY IP GNY G          EICA G RN WRC FDRL D+LYCGDVG   +E I  IECGNNYGW RFEGSRC E  +D     PC  + RS FTFP F
Sbjct:  173 DLYWTTGDGGPQTDPFNHSQ----------------DGTGYTIPPGNYHG-------AKAEICAIGLRNPWRCSFDRLNDDLYCGDVGQISVEEINFIECGNNYGWSRFEGSRCQEAVQDNEFNPPCDGISRSGFTFPLF 289          
BLAST of mRNA_F-distichus_contig99446.19387.1 vs. uniprot
Match: A0A6H5KS07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS07_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 1.570e-35
Identity = 70/141 (49.65%), Postives = 86/141 (60.99%), Query Frame = 1
Query:    1 HDLYWALGDGGPQRDTLDHGQRTDGYYGMVVRISVPSK-GSGYEIPEGNYAGPDDDPEEVLPEICANGFRNNWRCGFDRLTDELYCGDVGHNDIESIYKIECGNNYGWVRFEGSRCTEFSEDTYGP-CADVDRSSFTFPYF 417
            H+L+WA+GD GPQ DT D GQ  +  +G ++RI V S+ GSG +                       G RN +RC FDRL D+LYCGDVGH D+ESI KIECGNNYGW +FEG RC +  ED +   C  +DRS FTFP F
Sbjct:  222 HELFWAMGDSGPQLDTSDRGQDPNILHGSIIRIEVSSEMGSGDK----------------------EGMRNPYRCSFDRLNDDLYCGDVGHLDVESIKKIECGNNYGWRQFEGDRCMQQIEDQFPETCEFLDRSPFTFPEF 340          
BLAST of mRNA_F-distichus_contig99446.19387.1 vs. uniprot
Match: D7G957_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G957_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 3.280e-29
Identity = 55/99 (55.56%), Postives = 63/99 (63.64%), Query Frame = 1
Query:    4 DLYWALGDGGPQRDTLDHGQRTDGYYGMVVRISVPSKGSGYEIPEGNYAGPDDDPEEVLPEICANGFRNNWRCGFDRLTDELYCGDVGHNDIESIYKIE 300
            DLYW  GDGGPQ D  +H Q      G ++RISVP+ G+GY IP GNY G          E+CA G RN WRCGFDRL D+LYCGDVGH  +E I  IE
Sbjct:  272 DLYWTTGDGGPQTDPFNHSQDETTMLGAMMRISVPADGTGYTIPSGNYPG-------AKAEVCAIGLRNPWRCGFDRLNDDLYCGDVGHTLVEEINFIE 363          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig99446.19387.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6T7_ECTSI8.500e-5662.59WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JZF5_9PHAE1.880e-5160.71GSDH domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G962_ECTSI8.610e-4857.14GSDH domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G4P3_ECTSI1.420e-4757.86Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus... [more]
D7FJN8_ECTSI3.350e-4355.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KT40_9PHAE1.260e-4056.69GSDH domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FJP1_ECTSI7.720e-4052.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G960_ECTSI6.760e-3952.14Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus... [more]
A0A6H5KS07_9PHAE1.570e-3549.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G957_ECTSI3.280e-2955.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig99446contigF-distichus_contig99446:946..2094 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score195.3
Seed ortholog evalue1.9e-47
Seed eggNOG ortholog2880.D7G6T7
KEGG rclassRC00194
KEGG koko:K04618,ko:K08254,ko:K11244,ko:K20929
KEGG ReactionR01098
KEGG Pathwayko00052,ko04011,ko04139,map00052,map04011,map04139
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
EC1.1.3.9,1.2.3.15,3.2.1.59
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons3
Model size417
Cds size417
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig99446.19387.1prot_F-distichus_contig99446.19387.1Fucus distichus monoicouspolypeptideF-distichus_contig99446 946..2094 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931176.094741-CDS-F-distichus_contig99446:945..11201622931176.094741-CDS-F-distichus_contig99446:945..1120Fucus distichus monoicousCDSF-distichus_contig99446 946..1120 +
1690886191.4327197-CDS-F-distichus_contig99446:945..11201690886191.4327197-CDS-F-distichus_contig99446:945..1120Fucus distichus monoicousCDSF-distichus_contig99446 946..1120 +
1622931176.110204-CDS-F-distichus_contig99446:1707..18311622931176.110204-CDS-F-distichus_contig99446:1707..1831Fucus distichus monoicousCDSF-distichus_contig99446 1708..1831 +
1690886191.455006-CDS-F-distichus_contig99446:1707..18311690886191.455006-CDS-F-distichus_contig99446:1707..1831Fucus distichus monoicousCDSF-distichus_contig99446 1708..1831 +
1622931176.1242497-CDS-F-distichus_contig99446:1976..20941622931176.1242497-CDS-F-distichus_contig99446:1976..2094Fucus distichus monoicousCDSF-distichus_contig99446 1977..2094 +
1690886191.4663908-CDS-F-distichus_contig99446:1976..20941690886191.4663908-CDS-F-distichus_contig99446:1976..2094Fucus distichus monoicousCDSF-distichus_contig99446 1977..2094 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig99446.19387.1

>prot_F-distichus_contig99446.19387.1 ID=prot_F-distichus_contig99446.19387.1|Name=mRNA_F-distichus_contig99446.19387.1|organism=Fucus distichus monoicous|type=polypeptide|length=139bp
HDLYWALGDGGPQRDTLDHGQRTDGYYGMVVRISVPSKGSGYEIPEGNYA
GPDDDPEEVLPEICANGFRNNWRCGFDRLTDELYCGDVGHNDIESIYKIE
CGNNYGWVRFEGSRCTEFSEDTYGPCADVDRSSFTFPYF
back to top

mRNA from alignment at F-distichus_contig99446:946..2094+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig99446.19387.1 ID=mRNA_F-distichus_contig99446.19387.1|Name=mRNA_F-distichus_contig99446.19387.1|organism=Fucus distichus monoicous|type=mRNA|length=1149bp|location=Sequence derived from alignment at F-distichus_contig99446:946..2094+ (Fucus distichus monoicous)
CATGACCTGTACTGGGCTTTGGGAGACGGGGGTCCACAAAGAGACACTTT GGACCACGGCCAACGCACGGACGGCTACTATGGGATGGTGGTTCGAATTT CTGTACCCTCGAAGGGCTCGGGCTACGAAATACCAGAGGGCAACTATGCG GGCCCAGATGATGACCCGGAAGAAGGTAAGTAATGGCGCTAAGGTGCGAT ATCTTCCCTCTAGACGAGTGAGATTTGTGAGGGGGCGGGAAACGGTGCCG GGGTGGAGGTGTACCGATGGACGAGTATCTGGGCAAATCGAATTGGGTGG GATGAAACATATCTCGCGGAGGCATCGCCACCGTCGACCTCGAGTGGTTC ACAGCTTTTTTTCAAAGTGTCAAATCGCTCCGTTTTTCCTCGTGCTTTGG CGTGAAGGAAGATTTAAATATATCTATAAACTGCCTGCATACTATTAATA GAGTTAGGCCTTGTAATCGCATGAAATGGTGAAAGAGGTGATGTGACGGC TCACGAACATGTCTTCGGCAGCACAAAGAGGGCGCACACGGAAACAATGT CGGGAACGACAGTGGATCGCCTAAAACTGCAACTACGAGAAGCTTAAAAT AGACCGCAAGAATGATATGGTGGTCGCAAATTTGGCTACGAGGGAATACG GCGATCAATGTAGTAAGTTACGGGAGGTTCCTTGGTCGCAAGAAGTACTT AACACGAAATATTGCATTTTACTGCCAACTTTTCTATGCTGATAATGTTT GCTGCCTCTTAGTATTGCCCGAGATCTGTGCCAACGGTTTCCGCAACAAC TGGAGGTGTGGCTTTGACCGCCTTACTGACGAGCTCTACTGCGGGGATGT CGGCCACAATGACATCGAGAGCATCTACAAAATTGAGTGAGTAATGGGGT GAGAAGCTTCGCTTGCTTTGCTCAACAACACGTTTTGACCTTTCCCACCC CCCTAAATGAGGGATGCCCTGAAAATCTAGATGCGTTCATAATGTTCTCC AAACACGGGCGGATGGCAAACTCGTTGGCAGGTGTGGGAATAACTATGGA TGGGTGCGGTTTGAAGGATCGCGATGCACGGAATTCTCGGAGGACACCTA CGGCCCTTGCGCAGATGTTGACCGTTCAAGCTTCACTTTCCCTTACTTC
back to top

Coding sequence (CDS) from alignment at F-distichus_contig99446:946..2094+

>mRNA_F-distichus_contig99446.19387.1 ID=mRNA_F-distichus_contig99446.19387.1|Name=mRNA_F-distichus_contig99446.19387.1|organism=Fucus distichus monoicous|type=CDS|length=834bp|location=Sequence derived from alignment at F-distichus_contig99446:946..2094+ (Fucus distichus monoicous)
CATGACCTGTACTGGGCTTTGGGAGACGGGGGTCCACAAAGAGACACTTT
GGACCACGGCCAACGCACGGACGGCTACTATGGGATGGTGGTTCGAATTT
CTGTACCCTCGAAGGGCTCGGGCTACGAAATACCAGAGGGCAACTATGCG
GGCCCAGATGATGACCCGGAAGAAGCATGACCTGTACTGGGCTTTGGGAG
ACGGGGGTCCACAAAGAGACACTTTGGACCACGGCCAACGCACGGACGGC
TACTATGGGATGGTGGTTCGAATTTCTGTACCCTCGAAGGGCTCGGGCTA
CGAAATACCAGAGGGCAACTATGCGGGCCCAGATGATGACCCGGAAGAAG
TATTGCCCGAGATCTGTGCCAACGGTTTCCGCAACAACTGGAGGTGTGGC
TTTGACCGCCTTACTGACGAGCTCTACTGCGGGGATGTCGGCCACAATGA
CATCGAGAGCATCTACAAAATTGATATTGCCCGAGATCTGTGCCAACGGT
TTCCGCAACAACTGGAGGTGTGGCTTTGACCGCCTTACTGACGAGCTCTA
CTGCGGGGATGTCGGCCACAATGACATCGAGAGCATCTACAAAATTGAGT
GTGGGAATAACTATGGATGGGTGCGGTTTGAAGGATCGCGATGCACGGAA
TTCTCGGAGGACACCTACGGCCCTTGCGCAGATGTTGACCGTTCAAGCTT
CACTTTCCCTTACTTCGTGTGGGAATAACTATGGATGGGTGCGGTTTGAA
GGATCGCGATGCACGGAATTCTCGGAGGACACCTACGGCCCTTGCGCAGA
TGTTGACCGTTCAAGCTTCACTTTCCCTTACTTC
back to top