mRNA_F-distichus_contig99381.19381.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig99381.19381.1
Unique NamemRNA_F-distichus_contig99381.19381.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig99381.19381.1 vs. uniprot
Match: D8LFY4_ECTSI (Elongation factor G, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFY4_ECTSI)

HSP 1 Score: 204 bits (520), Expect = 9.020e-60
Identity = 100/111 (90.09%), Postives = 109/111 (98.20%), Query Frame = 1
Query:    1 QGVESVLSNGVLAGFPVLGMKAILVDGAYHDVDSSVMAFEIAGRAAAREGLRKAGARLMEPVMQVDVITPEEYMGDVIGDINARRGQVVELTDRNGLKQIESTVPLANMFQ 333
            +GVESVLSNGVLAGFPVLGMKA+LVDGA+HDVDSSVMAFEIAGRAA REGLRKAGARLMEP+MQVD+ITPEEYMGDVIGDIN+RRG +VEL+DRNGLKQ+ESTVPLANMFQ
Sbjct:  621 KGVESVLSNGVLAGFPVLGMKAVLVDGAFHDVDSSVMAFEIAGRAACREGLRKAGARLMEPIMQVDIITPEEYMGDVIGDINSRRGSIVELSDRNGLKQVESTVPLANMFQ 731          
BLAST of mRNA_F-distichus_contig99381.19381.1 vs. uniprot
Match: A0A836CHR4_9STRA (Elongation factor G, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHR4_9STRA)

HSP 1 Score: 197 bits (502), Expect = 3.250e-57
Identity = 95/111 (85.59%), Postives = 107/111 (96.40%), Query Frame = 1
Query:    1 QGVESVLSNGVLAGFPVLGMKAILVDGAYHDVDSSVMAFEIAGRAAAREGLRKAGARLMEPVMQVDVITPEEYMGDVIGDINARRGQVVELTDRNGLKQIESTVPLANMFQ 333
            +G+ESVL+NGVLAGFPVLG+KA LVDGAYHDVDSSVMAFEIAGRAA REGLRKAGARLMEP+M+VDV+TPEEYMGD+IGDIN+RRGQVVE+ DRNGLKQ+E+ VPLANMFQ
Sbjct:  620 KGIESVLANGVLAGFPVLGLKATLVDGAYHDVDSSVMAFEIAGRAATREGLRKAGARLMEPIMKVDVVTPEEYMGDIIGDINSRRGQVVEMIDRNGLKQVEAAVPLANMFQ 730          
BLAST of mRNA_F-distichus_contig99381.19381.1 vs. uniprot
Match: A0A7S0IR20_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IR20_9EUKA)

HSP 1 Score: 167 bits (422), Expect = 1.240e-50
Identity = 81/111 (72.97%), Postives = 99/111 (89.19%), Query Frame = 1
Query:    1 QGVESVLSNGVLAGFPVLGMKAILVDGAYHDVDSSVMAFEIAGRAAAREGLRKAGARLMEPVMQVDVITPEEYMGDVIGDINARRGQVVELTDRNGLKQIESTVPLANMFQ 333
            +G+ESV+S+GVLAGFPV+G KA LVDGA+HDVDSSVMAFEIAGRAAAR+GLR+AGA+LMEP+M+V+V TPEE MGDVIGDIN+RRG + EL +R  +K + + VPLANMFQ
Sbjct:   25 KGLESVMSSGVLAGFPVIGCKATLVDGAFHDVDSSVMAFEIAGRAAARKGLREAGAKLMEPLMKVEVTTPEESMGDVIGDINSRRGLIAELAERGNMKVVRAKVPLANMFQ 135          
BLAST of mRNA_F-distichus_contig99381.19381.1 vs. uniprot
Match: A0A7S3LBD3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LBD3_9STRA)

HSP 1 Score: 173 bits (438), Expect = 1.290e-50
Identity = 85/111 (76.58%), Postives = 98/111 (88.29%), Query Frame = 1
Query:    1 QGVESVLSNGVLAGFPVLGMKAILVDGAYHDVDSSVMAFEIAGRAAAREGLRKAGARLMEPVMQVDVITPEEYMGDVIGDINARRGQVVELTDRNGLKQIESTVPLANMFQ 333
            +G+ESVL  GV+AGFPVLG+KA L+DGAYHDVDSSVMAFEIAGRAAAREGLRKA ARLMEP+MQVD+ TPEEYMGD++GDIN+RRG V EL +R  +K I + VPLANMFQ
Sbjct:  241 KGIESVLGTGVIAGFPVLGLKATLLDGAYHDVDSSVMAFEIAGRAAAREGLRKAKARLMEPLMQVDITTPEEYMGDILGDINSRRGLVGELGERGNVKTISAQVPLANMFQ 351          
BLAST of mRNA_F-distichus_contig99381.19381.1 vs. uniprot
Match: A0A7S1GRX9_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GRX9_CYCTE)

HSP 1 Score: 172 bits (436), Expect = 5.960e-50
Identity = 85/111 (76.58%), Postives = 98/111 (88.29%), Query Frame = 1
Query:    1 QGVESVLSNGVLAGFPVLGMKAILVDGAYHDVDSSVMAFEIAGRAAAREGLRKAGARLMEPVMQVDVITPEEYMGDVIGDINARRGQVVELTDRNGLKQIESTVPLANMFQ 333
            +G+ESVL +GV+AG+PVLGMKA LVDGAYHDVDSSVMAFEIAGRAA REGLRKA ARLMEP+MQVDV TPEEYMGD++GDIN+RRG V +L +R  +K I + VPLANMFQ
Sbjct:  271 KGIESVLGSGVIAGYPVLGMKATLVDGAYHDVDSSVMAFEIAGRAATREGLRKAKARLMEPLMQVDVTTPEEYMGDILGDINSRRGLVGDLGERGNVKTISAQVPLANMFQ 381          
BLAST of mRNA_F-distichus_contig99381.19381.1 vs. uniprot
Match: A0A7S2FQT5_9STRA (Elongation factor G, mitochondrial n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FQT5_9STRA)

HSP 1 Score: 176 bits (446), Expect = 8.590e-50
Identity = 88/111 (79.28%), Postives = 96/111 (86.49%), Query Frame = 1
Query:    1 QGVESVLSNGVLAGFPVLGMKAILVDGAYHDVDSSVMAFEIAGRAAAREGLRKAGARLMEPVMQVDVITPEEYMGDVIGDINARRGQVVELTDRNGLKQIESTVPLANMFQ 333
            +G+ESVLS+G +AGFPVLGMKA L+DGAYHDVDSSVMAFEIAGR AAREGLRK G RLMEP+MQVDV TPEEYMGDVIGDI ARRG VVEL +R   K IE+ VPL NMFQ
Sbjct:  497 KGIESVLSSGPIAGFPVLGMKATLIDGAYHDVDSSVMAFEIAGRMAAREGLRKGGGRLMEPLMQVDVTTPEEYMGDVIGDITARRGMVVELGERGNTKTIEALVPLGNMFQ 607          
BLAST of mRNA_F-distichus_contig99381.19381.1 vs. uniprot
Match: W7THY0_9STRA (Elongation factor G, mitochondrial n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7THY0_9STRA)

HSP 1 Score: 177 bits (448), Expect = 1.450e-49
Identity = 85/111 (76.58%), Postives = 101/111 (90.99%), Query Frame = 1
Query:    1 QGVESVLSNGVLAGFPVLGMKAILVDGAYHDVDSSVMAFEIAGRAAAREGLRKAGARLMEPVMQVDVITPEEYMGDVIGDINARRGQVVELTDRNGLKQIESTVPLANMFQ 333
            +GVESV+ NGVLAGFPV G+KA LVDGA+HDVDSSV+AFEIAGRAAAREGLRKAG++LMEP+M+V+V+TPEEYMGDVIGDIN+RRGQ+ EL +R   K +E+ VPLANMFQ
Sbjct:  626 KGVESVMGNGVLAGFPVQGLKATLVDGAFHDVDSSVLAFEIAGRAAAREGLRKAGSKLMEPMMKVEVVTPEEYMGDVIGDINSRRGQIAELGERGNAKTVEAMVPLANMFQ 736          
BLAST of mRNA_F-distichus_contig99381.19381.1 vs. uniprot
Match: A0A7S0BD03_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BD03_9RHOD)

HSP 1 Score: 162 bits (411), Expect = 3.660e-49
Identity = 78/111 (70.27%), Postives = 97/111 (87.39%), Query Frame = 1
Query:    1 QGVESVLSNGVLAGFPVLGMKAILVDGAYHDVDSSVMAFEIAGRAAAREGLRKAGARLMEPVMQVDVITPEEYMGDVIGDINARRGQVVELTDRNGLKQIESTVPLANMFQ 333
            +G+ES ++NGV+AGFP+LG++A LVDGAYHDVDSSV+AFEIA RAA +EGLRKAGARLMEP+M+V+V+TPEEYMGDV+GD+N+RRGQV  L DR   K I + VPL+ MFQ
Sbjct:   10 KGIESEMTNGVVAGFPLLGLRAKLVDGAYHDVDSSVLAFEIAARAAFKEGLRKAGARLMEPIMKVEVVTPEEYMGDVLGDLNSRRGQVQSLGDRGVAKNIVALVPLSEMFQ 120          
BLAST of mRNA_F-distichus_contig99381.19381.1 vs. uniprot
Match: A0A7S2U7T6_9STRA (Elongation factor G, mitochondrial n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U7T6_9STRA)

HSP 1 Score: 174 bits (442), Expect = 5.080e-49
Identity = 86/111 (77.48%), Postives = 99/111 (89.19%), Query Frame = 1
Query:    1 QGVESVLSNGVLAGFPVLGMKAILVDGAYHDVDSSVMAFEIAGRAAAREGLRKAGARLMEPVMQVDVITPEEYMGDVIGDINARRGQVVELTDRNGLKQIESTVPLANMFQ 333
            +G+ESVL +GV+AG+PVLGMKA LVDGAYHDVDSSVMAFEIAGRAA REGLRKA ARLMEP+M+VD+ TPEEYMGDV+GDIN+RRGQV EL +R  +K I + VPLANMFQ
Sbjct:  542 KGIESVLGSGVVAGYPVLGMKATLVDGAYHDVDSSVMAFEIAGRAATREGLRKAKARLMEPLMKVDITTPEEYMGDVLGDINSRRGQVDELGERGNIKTISALVPLANMFQ 652          
BLAST of mRNA_F-distichus_contig99381.19381.1 vs. uniprot
Match: A0A7S3AYB0_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AYB0_9EUKA)

HSP 1 Score: 166 bits (419), Expect = 6.510e-49
Identity = 79/111 (71.17%), Postives = 99/111 (89.19%), Query Frame = 1
Query:    1 QGVESVLSNGVLAGFPVLGMKAILVDGAYHDVDSSVMAFEIAGRAAAREGLRKAGARLMEPVMQVDVITPEEYMGDVIGDINARRGQVVELTDRNGLKQIESTVPLANMFQ 333
            +G+ES++ +G+LAGFPV+G KA L+DGAYHDVDSSVMAFEIAGR AAR+GLR+AGA+LMEP+M+V+VITPEE+MGDVIGDIN+RRG V EL +R  +K + + VPLANMFQ
Sbjct:  125 KGLESIMGSGILAGFPVIGCKATLMDGAYHDVDSSVMAFEIAGRGAARKGLREAGAQLMEPMMKVEVITPEEHMGDVIGDINSRRGMVGELGERGNMKVVRAQVPLANMFQ 235          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig99381.19381.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFY4_ECTSI9.020e-6090.09Elongation factor G, mitochondrial n=2 Tax=Ectocar... [more]
A0A836CHR4_9STRA3.250e-5785.59Elongation factor G, mitochondrial n=1 Tax=Tribone... [more]
A0A7S0IR20_9EUKA1.240e-5072.97Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7S3LBD3_9STRA1.290e-5076.58Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
A0A7S1GRX9_CYCTE5.960e-5076.58Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S2FQT5_9STRA8.590e-5079.28Elongation factor G, mitochondrial n=1 Tax=Florenc... [more]
W7THY0_9STRA1.450e-4976.58Elongation factor G, mitochondrial n=2 Tax=Monodop... [more]
A0A7S0BD03_9RHOD3.660e-4970.27Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S2U7T6_9STRA5.080e-4977.48Elongation factor G, mitochondrial n=1 Tax=Attheya... [more]
A0A7S3AYB0_9EUKA6.510e-4971.17Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig99381contigF-distichus_contig99381:19..942 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score205.3
Seed ortholog evalue1.5e-50
Seed eggNOG ortholog2880.D8LFY4
KEGG koko:K02355
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003674,GO:0005488,GO:0005524,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006996,GO:0007275,GO:0008144,GO:0008150,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009657,GO:0009658,GO:0009791,GO:0009845,GO:0009941,GO:0009987,GO:0016043,GO:0017076,GO:0030554,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0048046,GO:0048856,GO:0071840,GO:0090351,GO:0097159,GO:0097367,GO:1901265,GO:1901363
EggNOG free text desc.translation elongation factor activity
EggNOG OGsCOG0480@1,KOG0465@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012,ko03029
Exons2
Model size333
Cds size333
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931175.354414-CDS-F-distichus_contig99381:18..2101622931175.354414-CDS-F-distichus_contig99381:18..210Fucus distichus monoicousCDSF-distichus_contig99381 19..210 +
1690886191.0125463-CDS-F-distichus_contig99381:18..2101690886191.0125463-CDS-F-distichus_contig99381:18..210Fucus distichus monoicousCDSF-distichus_contig99381 19..210 +
1622931175.369722-CDS-F-distichus_contig99381:801..9421622931175.369722-CDS-F-distichus_contig99381:801..942Fucus distichus monoicousCDSF-distichus_contig99381 802..942 +
1690886191.025503-CDS-F-distichus_contig99381:801..9421690886191.025503-CDS-F-distichus_contig99381:801..942Fucus distichus monoicousCDSF-distichus_contig99381 802..942 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig99381.19381.1prot_F-distichus_contig99381.19381.1Fucus distichus monoicouspolypeptideF-distichus_contig99381 19..942 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig99381.19381.1

>prot_F-distichus_contig99381.19381.1 ID=prot_F-distichus_contig99381.19381.1|Name=mRNA_F-distichus_contig99381.19381.1|organism=Fucus distichus monoicous|type=polypeptide|length=111bp
QGVESVLSNGVLAGFPVLGMKAILVDGAYHDVDSSVMAFEIAGRAAAREG
LRKAGARLMEPVMQVDVITPEEYMGDVIGDINARRGQVVELTDRNGLKQI
ESTVPLANMFQ
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mRNA from alignment at F-distichus_contig99381:19..942+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig99381.19381.1 ID=mRNA_F-distichus_contig99381.19381.1|Name=mRNA_F-distichus_contig99381.19381.1|organism=Fucus distichus monoicous|type=mRNA|length=924bp|location=Sequence derived from alignment at F-distichus_contig99381:19..942+ (Fucus distichus monoicous)
CAGGGTGTGGAATCGGTTCTATCCAACGGCGTGCTGGCGGGCTTCCCCGT GCTGGGCATGAAGGCGATTCTCGTGGACGGGGCTTACCACGACGTGGACT CTTCGGTAATGGCGTTCGAGATCGCGGGCCGCGCCGCCGCCAGGGAGGGT TTGAGAAAGGCCGGCGCCCGGCTCATGGAACCCGTTATGCAGGTTGCCGT CGTGTCGTTTCGCTATCGCTCTTGCAAATCAAACCTTGCCTCGTATTGTC TTGTATTTTGCGGTTGCGTCAAGCCGAGGCTGCTCTGACTGCCTTTTTCT GTCTGTGGTCTCTCGCGGTGTAGTGTATCGATTTCCGTTTCCTCTTACGC ACCGACTTATGTATTTCAACCGTCTATGATTTCGTGAGATCTGAGTGGGT CAGAGTGTGTTGATCAGAACGCGTGGAGACGTGAACAAAAAAGGTACATT CAAAATAGAAAAGGGTACATCAAAATGACAAAGGTACATGAAATAAAAAG GGTACATCTTAAACTGCTCGTCACACACCCCATGGATGCATGTTTTCAGC ACTGTGTCGGGCCAGCCGGAGATACTGCGTGAGGCTCAGAGGTTTGATTT GTAAACGGGTGACAGACTCACTGGTTCTACCCTCTGTGTTTTTCTTCAAC AAATAATTATATAAAACGTTGCACTCGAGTACCTTTTTTTTATTAAGGTG TAGTGATCTACACACTCATGTACTGCATGTCCGTCGCTGTCTTCCTATTT CGTCATTATTATTATTATTTTGCTTGCTGAAAGGTGGACGTGATCACTCC GGAGGAGTACATGGGCGACGTGATCGGGGACATCAACGCTCGCCGCGGGC AGGTGGTGGAGCTAACAGACAGGAACGGCTTGAAGCAAATAGAGTCCACC GTGCCCTTGGCCAACATGTTCCAG
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Coding sequence (CDS) from alignment at F-distichus_contig99381:19..942+

>mRNA_F-distichus_contig99381.19381.1 ID=mRNA_F-distichus_contig99381.19381.1|Name=mRNA_F-distichus_contig99381.19381.1|organism=Fucus distichus monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at F-distichus_contig99381:19..942+ (Fucus distichus monoicous)
CAGGGTGTGGAATCGGTTCTATCCAACGGCGTGCTGGCGGGCTTCCCCGT
GCTGGGCATGAAGGCGATTCTCGTGGACGGGGCTTACCACGACGTGGACT
CTTCGGTAATGGCGTTCGAGATCGCGGGCCGCGCCGCCGCCAGGGAGGGT
TTGAGAAAGGCCGGCGCCCGGCTCATGGAACCCGTTATGCAGCAGGGTGT
GGAATCGGTTCTATCCAACGGCGTGCTGGCGGGCTTCCCCGTGCTGGGCA
TGAAGGCGATTCTCGTGGACGGGGCTTACCACGACGTGGACTCTTCGGTA
ATGGCGTTCGAGATCGCGGGCCGCGCCGCCGCCAGGGAGGGTTTGAGAAA
GGCCGGCGCCCGGCTCATGGAACCCGTTATGCAGGTGGACGTGATCACTC
CGGAGGAGTACATGGGCGACGTGATCGGGGACATCAACGCTCGCCGCGGG
CAGGTGGTGGAGCTAACAGACAGGAACGGCTTGAAGCAAATAGAGTCCAC
CGTGCCCTTGGCCAACATGTTCCAGGTGGACGTGATCACTCCGGAGGAGT
ACATGGGCGACGTGATCGGGGACATCAACGCTCGCCGCGGGCAGGTGGTG
GAGCTAACAGACAGGAACGGCTTGAAGCAAATAGAGTCCACCGTGCCCTT
GGCCAACATGTTCCAG
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