mRNA_F-distichus_contig99380.19380.1 (mRNA) Fucus distichus monoicous
|
Overview
Homology
BLAST of mRNA_F-distichus_contig99380.19380.1 vs. uniprot
Match: A0A6H5L806_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L806_9PHAE) HSP 1 Score: 110 bits (276), Expect = 3.120e-25 Identity = 64/163 (39.26%), Postives = 95/163 (58.28%), Query Frame = 1
Query: 4 FFPNIKSVRMRETKKVESQCVRDEEGGLLRDKRRIRERRVRFFRSLPDVKSDTLDPDIPTRLPQHPVKSALGAEPTEEEVATAVKALANAKAVGPGGLPAELLKLRLQQNQTIILEFHRLTTLIWREERVPQQWRGGVVTRLHKKNDRAKCRNYRGISLVSRA 492
F+ +++ + + + SQ ++DE+G +LRD IR+R R+F L + KS T+D ++ + P L P+ EV AV+ N KAVGP LPAEL+KL L + Q ++ EFH + +W+ VPQQW+ + L KK D +C NYRGISLV+ A
Sbjct: 40 FYRHLQMIDVEGKRSFTSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVRERDNRKAVGPDDLPAELIKLFLDEGQGLLREFHAIVVNVWQTGDVPQQWKDATIKVLFKKGDTMECGNYRGISLVAHA 202
BLAST of mRNA_F-distichus_contig99380.19380.1 vs. uniprot
Match: A0A6H5JJQ9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJQ9_9PHAE) HSP 1 Score: 102 bits (253), Expect = 8.080e-24 Identity = 64/147 (43.54%), Postives = 86/147 (58.50%), Query Frame = 1
Query: 58 QCVRDEEGGLLRDKRRIRERRVRFFRSLPDVKSDTLDPDIPTRLPQHPVK---SALGAEPTEEEVATAVKALANAKAVGPGGLPAELLKLRLQQNQTIIL-EFHRLTTLIWREERVPQQWRGGVVTRLHKKNDRAKCRNYRGISLVS 486
Q V DE+G LLR++ I +R RFF +L + KS TL+PDI R+ Q P LG P EEVA A K L N KA G LPAELLK+ ++ +L H + +W +P++W+ + L+KK DR+ C NYRGISL+S
Sbjct: 23 QFVADEDGVLLRNRDDILQRWARFFSTLLNTKSPTLNPDIIERVTQRPATRDTQRLGDVPELEEVARATKGLKNWKAPGHDSLPAELLKI--DDDEPFVLGHLHTILVKVWNGGDIPREWKDATIKVLYKKGDRSNCNNYRGISLLS 167
BLAST of mRNA_F-distichus_contig99380.19380.1 vs. uniprot
Match: A0A6H5K319_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K319_9PHAE) HSP 1 Score: 105 bits (262), Expect = 2.800e-23 Identity = 64/146 (43.84%), Postives = 84/146 (57.53%), Query Frame = 1
Query: 58 QCVRDEEGGLLRDKRRIRERRVRFFRSLPDVKSDTLDPDIPTRLPQHPVKSA---LGAEPTEEEVATAVKALANAKAVGPGGLPAELLKLRLQQNQTIILEFHRLTTLIWREERVPQQWRGGVVTRLHKKNDRAKCRNYRGISLVS 486
Q V DE G LLR+K I +R RFF +L + KS TL+PD+ ++ Q P A L A P EEV A K L N KAVGP L AELLK+ ++ + +W +PQ+W+ ++ LHKK DR+ C NYRGISL+S
Sbjct: 741 QFVTDENGVLLRNKDAILKRWRRFFNTLLNSKSPTLNPDVVEQVMQRPATRATRHLAAVPDLEEVEAATKGLGNWKAVGPDLLAAELLKVDGDDEPVVLERLRAIFVEVWNGGEMPQEWKDAIIKVLHKKGDRSNCNNYRGISLLS 886
BLAST of mRNA_F-distichus_contig99380.19380.1 vs. uniprot
Match: A0A6H5LG55_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LG55_9PHAE) HSP 1 Score: 104 bits (259), Expect = 3.500e-23 Identity = 62/146 (42.47%), Postives = 85/146 (58.22%), Query Frame = 1
Query: 55 SQCVRDEEGGLLRDKRRIRERRVRFFRSLPDVKSDTLDPDIPTRLPQHPVKSALGAEPTEEEVATAVKALANAKAVGPGGLPAELLKLRLQQNQTIILEFHRLTTLIWREERVPQQWRGGVVTRLHKKNDRAKCRNYRGISLVSRA 492
SQ ++DE+G +LRD IR+R R F L + KS T+D + + P L P+ EV AV+ +AN KAVGP LPAEL+KL L ++Q+++ E H +W+ VPQQW+ L K D +C NYRGISLV+ A
Sbjct: 12 SQNIKDEDGKVLRDPMFIRQRWARCFHKLLNTKSPTIDLHAADTVKRWPTCMPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIKLFLDEDQSLLRESHANVVDVWQTRDVPQQWKDATTKVLFNKGDTMECGNYRGISLVAHA 157
BLAST of mRNA_F-distichus_contig99380.19380.1 vs. uniprot
Match: A0A6H5K963_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K963_9PHAE) HSP 1 Score: 101 bits (251), Expect = 6.180e-23 Identity = 62/146 (42.47%), Postives = 83/146 (56.85%), Query Frame = 1
Query: 58 QCVRDEEGGLLRDKRRIRERRVRFFRSLPDVKSDTLDPDIPTRLPQHPVKSA---LGAEPTEEEVATAVKALANAKAVGPGGLPAELLKLRLQQNQTIILEFHRLTTLIWREERVPQQWRGGVVTRLHKKNDRAKCRNYRGISLVS 486
Q V DE G LLR+K I +R RFF +L + KS TL+PD+ ++ Q P A L A P EEV A K L N KAVGP L AELLK+ ++ + +W +PQ+W+ ++ L+KK DR C N+RGISL+S
Sbjct: 122 QFVTDENGVLLRNKNAILKRWRRFFDTLLNSKSPTLNPDVVEQVTQRPATRATRRLAAVPDLEEVEVATKGLGNWKAVGPDLLAAELLKVDGDDEPIVLERLRAIFVEVWNGGEMPQEWKDAIIKVLYKKGDRTNCNNFRGISLLS 267
BLAST of mRNA_F-distichus_contig99380.19380.1 vs. uniprot
Match: A0A6H5K5P0_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5P0_9PHAE) HSP 1 Score: 99.4 bits (246), Expect = 1.100e-22 Identity = 63/147 (42.86%), Postives = 84/147 (57.14%), Query Frame = 1
Query: 58 QCVRDEEGGLLRDKRRIRERRVRFFRSLPDVKSDTLDPDIPTRLPQHPVK---SALGAEPTEEEVATAVKALANAKAVGPGGLPAELLKLRLQQNQTIIL-EFHRLTTLIWREERVPQQWRGGVVTRLHKKNDRAKCRNYRGISLVS 486
Q V DE LLR++ I +R RFF +L + KS TL+PDI R+ Q P LG P EEVA A K L N KA G LPAELLK+ ++ +L H + +W +P++W+ + L+KK DR+ C NYRGISL+S
Sbjct: 23 QLVADENDVLLRNRDDILQRWARFFSTLLNTKSPTLNPDIIERVTQRPATRDTQRLGDVPELEEVARATKGLKNWKAPGHDSLPAELLKI--DDDEPFVLGHLHTILVKVWNGGDIPREWKNATIKVLYKKGDRSNCNNYRGISLLS 167
BLAST of mRNA_F-distichus_contig99380.19380.1 vs. uniprot
Match: A0A6H5JEX7_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX7_9PHAE) HSP 1 Score: 103 bits (256), Expect = 1.680e-22 Identity = 63/146 (43.15%), Postives = 84/146 (57.53%), Query Frame = 1
Query: 58 QCVRDEEGGLLRDKRRIRERRVRFFRSLPDVKSDTLDPDIPTRLPQHPVKSA---LGAEPTEEEVATAVKALANAKAVGPGGLPAELLKLRLQQNQTIILEFHRLTTLIWREERVPQQWRGGVVTRLHKKNDRAKCRNYRGISLVS 486
Q V DE G LLR+K I +R RFF +L + KS TL+PD+ ++ Q P A L A P EEV A K L N KAVGP L AELLK+ ++ + +W +PQ+W+ ++ L+KK DR+ C NYRGISL+S
Sbjct: 125 QFVTDENGVLLRNKDAILKRWRRFFNTLLNSKSPTLNPDVVEQVMQRPATRATRHLAAVPDLEEVEAATKGLGNWKAVGPDLLAAELLKVDGDDEPVVLERLRAIFVEVWNGGEMPQEWKDAIIKVLYKKGDRSNCNNYRGISLLS 270
BLAST of mRNA_F-distichus_contig99380.19380.1 vs. uniprot
Match: A0A6H5K7U5_9PHAE (Reverse transcriptase domain-containing protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7U5_9PHAE) HSP 1 Score: 103 bits (256), Expect = 1.750e-22 Identity = 63/146 (43.15%), Postives = 84/146 (57.53%), Query Frame = 1
Query: 58 QCVRDEEGGLLRDKRRIRERRVRFFRSLPDVKSDTLDPDIPTRLPQHPVKSA---LGAEPTEEEVATAVKALANAKAVGPGGLPAELLKLRLQQNQTIILEFHRLTTLIWREERVPQQWRGGVVTRLHKKNDRAKCRNYRGISLVS 486
Q V DE G LLR+K I +R RFF +L + KS TL+PD+ ++ Q P A L A P EEV A K L N KAVGP L AELLK+ ++ + +W +PQ+W+ ++ L+KK DR+ C NYRGISL+S
Sbjct: 454 QFVTDENGVLLRNKDAILKRWRRFFNTLLNSKSPTLNPDVVEQVMQRPATRATRHLAAVPDLEEVEAATKGLGNWKAVGPDLLAAELLKVDGDDEPVVLERLRAIFVEVWNGGEMPQEWKDAIIKVLYKKGDRSNCNNYRGISLLS 599
BLAST of mRNA_F-distichus_contig99380.19380.1 vs. uniprot
Match: A0A6H5JLM6_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLM6_9PHAE) HSP 1 Score: 103 bits (256), Expect = 1.810e-22 Identity = 63/146 (43.15%), Postives = 84/146 (57.53%), Query Frame = 1
Query: 58 QCVRDEEGGLLRDKRRIRERRVRFFRSLPDVKSDTLDPDIPTRLPQHPVKSA---LGAEPTEEEVATAVKALANAKAVGPGGLPAELLKLRLQQNQTIILEFHRLTTLIWREERVPQQWRGGVVTRLHKKNDRAKCRNYRGISLVS 486
Q V DE G LLR+K I +R RFF +L + KS TL+PD+ ++ Q P A L A P EEV A K L N KAVGP L AELLK+ ++ + +W +PQ+W+ ++ L+KK DR+ C NYRGISL+S
Sbjct: 945 QFVTDENGVLLRNKDAILKRWRRFFNTLLNSKSPTLNPDVVEQVMQRPATRATRHLAAVPDLEEVEAATKGLGNWKAVGPDLLAAELLKVDGDDEPVVLERLRAIFVEVWNGGEMPQEWKDAIIKVLYKKGDRSNCNNYRGISLLS 1090
BLAST of mRNA_F-distichus_contig99380.19380.1 vs. uniprot
Match: A0A6H5K9M9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M9_9PHAE) HSP 1 Score: 97.8 bits (242), Expect = 1.820e-22 Identity = 65/148 (43.92%), Postives = 85/148 (57.43%), Query Frame = 1
Query: 58 QCVRDEEGGLLRDKRRIRERRVRFFRSLPDVKSDTLDPDIPTRLPQHPVK---SALGAEPTEEEVATAVKALANAKAVGPGGLPAELLKLRLQQNQTIILEFHRLTTLI--WREERVPQQWRGGVVTRLHKKNDRAKCRNYRGISLVS 486
Q V DE G LLR++ I +R RFF +L + KS TL+PDI R+ Q P LG P EEVA A K L N KA G LPAE+LK+ + ++ H T L+ W +P++W+ + L+KK DR+KC NYRGISL S
Sbjct: 23 QFVADENGVLLRNRDDILQRWARFFSTLLNTKSPTLNPDIIERMTQRPATRDTQRLGDVPELEEVARATKGLKNWKAPGNDSLPAEMLKI---DDDEPFVQGHLYTILVKVWNGGDIPREWKDATIKVLYKKGDRSKCINYRGISLQS 167 The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig99380.19380.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-distichus_contig99380.19380.1 >prot_F-distichus_contig99380.19380.1 ID=prot_F-distichus_contig99380.19380.1|Name=mRNA_F-distichus_contig99380.19380.1|organism=Fucus distichus monoicous|type=polypeptide|length=154bp MRETKKVESQCVRDEEGGLLRDKRRIRERRVRFFRSLPDVKSDTLDPDIPback to top mRNA from alignment at F-distichus_contig99380:1314..1805- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-distichus_contig99380.19380.1 ID=mRNA_F-distichus_contig99380.19380.1|Name=mRNA_F-distichus_contig99380.19380.1|organism=Fucus distichus monoicous|type=mRNA|length=492bp|location=Sequence derived from alignment at F-distichus_contig99380:1314..1805- (Fucus distichus monoicous)back to top Coding sequence (CDS) from alignment at F-distichus_contig99380:1314..1805- >mRNA_F-distichus_contig99380.19380.1 ID=mRNA_F-distichus_contig99380.19380.1|Name=mRNA_F-distichus_contig99380.19380.1|organism=Fucus distichus monoicous|type=CDS|length=924bp|location=Sequence derived from alignment at F-distichus_contig99380:1314..1805- (Fucus distichus monoicous)back to top |