mRNA_F-distichus_contig99380.19380.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig99380.19380.1
Unique NamemRNA_F-distichus_contig99380.19380.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig99380.19380.1 vs. uniprot
Match: A0A6H5L806_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L806_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 3.120e-25
Identity = 64/163 (39.26%), Postives = 95/163 (58.28%), Query Frame = 1
Query:    4 FFPNIKSVRMRETKKVESQCVRDEEGGLLRDKRRIRERRVRFFRSLPDVKSDTLDPDIPTRLPQHPVKSALGAEPTEEEVATAVKALANAKAVGPGGLPAELLKLRLQQNQTIILEFHRLTTLIWREERVPQQWRGGVVTRLHKKNDRAKCRNYRGISLVSRA 492
            F+ +++ + +   +   SQ ++DE+G +LRD   IR+R  R+F  L + KS T+D     ++ + P    L   P+  EV  AV+   N KAVGP  LPAEL+KL L + Q ++ EFH +   +W+   VPQQW+   +  L KK D  +C NYRGISLV+ A
Sbjct:   40 FYRHLQMIDVEGKRSFTSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVRERDNRKAVGPDDLPAELIKLFLDEGQGLLREFHAIVVNVWQTGDVPQQWKDATIKVLFKKGDTMECGNYRGISLVAHA 202          
BLAST of mRNA_F-distichus_contig99380.19380.1 vs. uniprot
Match: A0A6H5JJQ9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJQ9_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 8.080e-24
Identity = 64/147 (43.54%), Postives = 86/147 (58.50%), Query Frame = 1
Query:   58 QCVRDEEGGLLRDKRRIRERRVRFFRSLPDVKSDTLDPDIPTRLPQHPVK---SALGAEPTEEEVATAVKALANAKAVGPGGLPAELLKLRLQQNQTIIL-EFHRLTTLIWREERVPQQWRGGVVTRLHKKNDRAKCRNYRGISLVS 486
            Q V DE+G LLR++  I +R  RFF +L + KS TL+PDI  R+ Q P       LG  P  EEVA A K L N KA G   LPAELLK+    ++  +L   H +   +W    +P++W+   +  L+KK DR+ C NYRGISL+S
Sbjct:   23 QFVADEDGVLLRNRDDILQRWARFFSTLLNTKSPTLNPDIIERVTQRPATRDTQRLGDVPELEEVARATKGLKNWKAPGHDSLPAELLKI--DDDEPFVLGHLHTILVKVWNGGDIPREWKDATIKVLYKKGDRSNCNNYRGISLLS 167          
BLAST of mRNA_F-distichus_contig99380.19380.1 vs. uniprot
Match: A0A6H5K319_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K319_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 2.800e-23
Identity = 64/146 (43.84%), Postives = 84/146 (57.53%), Query Frame = 1
Query:   58 QCVRDEEGGLLRDKRRIRERRVRFFRSLPDVKSDTLDPDIPTRLPQHPVKSA---LGAEPTEEEVATAVKALANAKAVGPGGLPAELLKLRLQQNQTIILEFHRLTTLIWREERVPQQWRGGVVTRLHKKNDRAKCRNYRGISLVS 486
            Q V DE G LLR+K  I +R  RFF +L + KS TL+PD+  ++ Q P   A   L A P  EEV  A K L N KAVGP  L AELLK+       ++     +   +W    +PQ+W+  ++  LHKK DR+ C NYRGISL+S
Sbjct:  741 QFVTDENGVLLRNKDAILKRWRRFFNTLLNSKSPTLNPDVVEQVMQRPATRATRHLAAVPDLEEVEAATKGLGNWKAVGPDLLAAELLKVDGDDEPVVLERLRAIFVEVWNGGEMPQEWKDAIIKVLHKKGDRSNCNNYRGISLLS 886          
BLAST of mRNA_F-distichus_contig99380.19380.1 vs. uniprot
Match: A0A6H5LG55_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LG55_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 3.500e-23
Identity = 62/146 (42.47%), Postives = 85/146 (58.22%), Query Frame = 1
Query:   55 SQCVRDEEGGLLRDKRRIRERRVRFFRSLPDVKSDTLDPDIPTRLPQHPVKSALGAEPTEEEVATAVKALANAKAVGPGGLPAELLKLRLQQNQTIILEFHRLTTLIWREERVPQQWRGGVVTRLHKKNDRAKCRNYRGISLVSRA 492
            SQ ++DE+G +LRD   IR+R  R F  L + KS T+D      + + P    L   P+  EV  AV+ +AN KAVGP  LPAEL+KL L ++Q+++ E H     +W+   VPQQW+      L  K D  +C NYRGISLV+ A
Sbjct:   12 SQNIKDEDGKVLRDPMFIRQRWARCFHKLLNTKSPTIDLHAADTVKRWPTCMPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIKLFLDEDQSLLRESHANVVDVWQTRDVPQQWKDATTKVLFNKGDTMECGNYRGISLVAHA 157          
BLAST of mRNA_F-distichus_contig99380.19380.1 vs. uniprot
Match: A0A6H5K963_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K963_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 6.180e-23
Identity = 62/146 (42.47%), Postives = 83/146 (56.85%), Query Frame = 1
Query:   58 QCVRDEEGGLLRDKRRIRERRVRFFRSLPDVKSDTLDPDIPTRLPQHPVKSA---LGAEPTEEEVATAVKALANAKAVGPGGLPAELLKLRLQQNQTIILEFHRLTTLIWREERVPQQWRGGVVTRLHKKNDRAKCRNYRGISLVS 486
            Q V DE G LLR+K  I +R  RFF +L + KS TL+PD+  ++ Q P   A   L A P  EEV  A K L N KAVGP  L AELLK+       ++     +   +W    +PQ+W+  ++  L+KK DR  C N+RGISL+S
Sbjct:  122 QFVTDENGVLLRNKNAILKRWRRFFDTLLNSKSPTLNPDVVEQVTQRPATRATRRLAAVPDLEEVEVATKGLGNWKAVGPDLLAAELLKVDGDDEPIVLERLRAIFVEVWNGGEMPQEWKDAIIKVLYKKGDRTNCNNFRGISLLS 267          
BLAST of mRNA_F-distichus_contig99380.19380.1 vs. uniprot
Match: A0A6H5K5P0_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5P0_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 1.100e-22
Identity = 63/147 (42.86%), Postives = 84/147 (57.14%), Query Frame = 1
Query:   58 QCVRDEEGGLLRDKRRIRERRVRFFRSLPDVKSDTLDPDIPTRLPQHPVK---SALGAEPTEEEVATAVKALANAKAVGPGGLPAELLKLRLQQNQTIIL-EFHRLTTLIWREERVPQQWRGGVVTRLHKKNDRAKCRNYRGISLVS 486
            Q V DE   LLR++  I +R  RFF +L + KS TL+PDI  R+ Q P       LG  P  EEVA A K L N KA G   LPAELLK+    ++  +L   H +   +W    +P++W+   +  L+KK DR+ C NYRGISL+S
Sbjct:   23 QLVADENDVLLRNRDDILQRWARFFSTLLNTKSPTLNPDIIERVTQRPATRDTQRLGDVPELEEVARATKGLKNWKAPGHDSLPAELLKI--DDDEPFVLGHLHTILVKVWNGGDIPREWKNATIKVLYKKGDRSNCNNYRGISLLS 167          
BLAST of mRNA_F-distichus_contig99380.19380.1 vs. uniprot
Match: A0A6H5JEX7_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX7_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 1.680e-22
Identity = 63/146 (43.15%), Postives = 84/146 (57.53%), Query Frame = 1
Query:   58 QCVRDEEGGLLRDKRRIRERRVRFFRSLPDVKSDTLDPDIPTRLPQHPVKSA---LGAEPTEEEVATAVKALANAKAVGPGGLPAELLKLRLQQNQTIILEFHRLTTLIWREERVPQQWRGGVVTRLHKKNDRAKCRNYRGISLVS 486
            Q V DE G LLR+K  I +R  RFF +L + KS TL+PD+  ++ Q P   A   L A P  EEV  A K L N KAVGP  L AELLK+       ++     +   +W    +PQ+W+  ++  L+KK DR+ C NYRGISL+S
Sbjct:  125 QFVTDENGVLLRNKDAILKRWRRFFNTLLNSKSPTLNPDVVEQVMQRPATRATRHLAAVPDLEEVEAATKGLGNWKAVGPDLLAAELLKVDGDDEPVVLERLRAIFVEVWNGGEMPQEWKDAIIKVLYKKGDRSNCNNYRGISLLS 270          
BLAST of mRNA_F-distichus_contig99380.19380.1 vs. uniprot
Match: A0A6H5K7U5_9PHAE (Reverse transcriptase domain-containing protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7U5_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 1.750e-22
Identity = 63/146 (43.15%), Postives = 84/146 (57.53%), Query Frame = 1
Query:   58 QCVRDEEGGLLRDKRRIRERRVRFFRSLPDVKSDTLDPDIPTRLPQHPVKSA---LGAEPTEEEVATAVKALANAKAVGPGGLPAELLKLRLQQNQTIILEFHRLTTLIWREERVPQQWRGGVVTRLHKKNDRAKCRNYRGISLVS 486
            Q V DE G LLR+K  I +R  RFF +L + KS TL+PD+  ++ Q P   A   L A P  EEV  A K L N KAVGP  L AELLK+       ++     +   +W    +PQ+W+  ++  L+KK DR+ C NYRGISL+S
Sbjct:  454 QFVTDENGVLLRNKDAILKRWRRFFNTLLNSKSPTLNPDVVEQVMQRPATRATRHLAAVPDLEEVEAATKGLGNWKAVGPDLLAAELLKVDGDDEPVVLERLRAIFVEVWNGGEMPQEWKDAIIKVLYKKGDRSNCNNYRGISLLS 599          
BLAST of mRNA_F-distichus_contig99380.19380.1 vs. uniprot
Match: A0A6H5JLM6_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLM6_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 1.810e-22
Identity = 63/146 (43.15%), Postives = 84/146 (57.53%), Query Frame = 1
Query:   58 QCVRDEEGGLLRDKRRIRERRVRFFRSLPDVKSDTLDPDIPTRLPQHPVKSA---LGAEPTEEEVATAVKALANAKAVGPGGLPAELLKLRLQQNQTIILEFHRLTTLIWREERVPQQWRGGVVTRLHKKNDRAKCRNYRGISLVS 486
            Q V DE G LLR+K  I +R  RFF +L + KS TL+PD+  ++ Q P   A   L A P  EEV  A K L N KAVGP  L AELLK+       ++     +   +W    +PQ+W+  ++  L+KK DR+ C NYRGISL+S
Sbjct:  945 QFVTDENGVLLRNKDAILKRWRRFFNTLLNSKSPTLNPDVVEQVMQRPATRATRHLAAVPDLEEVEAATKGLGNWKAVGPDLLAAELLKVDGDDEPVVLERLRAIFVEVWNGGEMPQEWKDAIIKVLYKKGDRSNCNNYRGISLLS 1090          
BLAST of mRNA_F-distichus_contig99380.19380.1 vs. uniprot
Match: A0A6H5K9M9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M9_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 1.820e-22
Identity = 65/148 (43.92%), Postives = 85/148 (57.43%), Query Frame = 1
Query:   58 QCVRDEEGGLLRDKRRIRERRVRFFRSLPDVKSDTLDPDIPTRLPQHPVK---SALGAEPTEEEVATAVKALANAKAVGPGGLPAELLKLRLQQNQTIILEFHRLTTLI--WREERVPQQWRGGVVTRLHKKNDRAKCRNYRGISLVS 486
            Q V DE G LLR++  I +R  RFF +L + KS TL+PDI  R+ Q P       LG  P  EEVA A K L N KA G   LPAE+LK+    +    ++ H  T L+  W    +P++W+   +  L+KK DR+KC NYRGISL S
Sbjct:   23 QFVADENGVLLRNRDDILQRWARFFSTLLNTKSPTLNPDIIERMTQRPATRDTQRLGDVPELEEVARATKGLKNWKAPGNDSLPAEMLKI---DDDEPFVQGHLYTILVKVWNGGDIPREWKDATIKVLYKKGDRSKCINYRGISLQS 167          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig99380.19380.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L806_9PHAE3.120e-2539.26Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JJQ9_9PHAE8.080e-2443.54Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K319_9PHAE2.800e-2343.84Reverse transcriptase domain-containing protein n=... [more]
A0A6H5LG55_9PHAE3.500e-2342.47Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K963_9PHAE6.180e-2342.47Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K5P0_9PHAE1.100e-2242.86Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JEX7_9PHAE1.680e-2243.15Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K7U5_9PHAE1.750e-2243.15Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JLM6_9PHAE1.810e-2243.15Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K9M9_9PHAE1.820e-2243.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig99380contigF-distichus_contig99380:1314..1805 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score82.0
Seed ortholog evalue2.6e-13
Seed eggNOG ortholog8469.XP_007053327.1
KEGG koko:K12015
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain in SPla and the RYanodine Receptor.
EggNOG OGs399W1@33154,3CE0A@33208,3DVCR@33213,48NQJ@7711,49JSK@7742,4CKBC@8459,KOG1075@1,KOG1075@2759,KOG2177@1,KOG2177@2759
EC2.3.2.27
COG Functional cat.O
Best tax levelTestudines
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Exons1
Model size492
Cds size462
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931175.278775-CDS-F-distichus_contig99380:1313..17751622931175.278775-CDS-F-distichus_contig99380:1313..1775Fucus distichus monoicousCDSF-distichus_contig99380 1314..1775 -
1690886190.9875784-CDS-F-distichus_contig99380:1313..17751690886190.9875784-CDS-F-distichus_contig99380:1313..1775Fucus distichus monoicousCDSF-distichus_contig99380 1314..1775 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931175.2959614-UTR-F-distichus_contig99380:1775..18051622931175.2959614-UTR-F-distichus_contig99380:1775..1805Fucus distichus monoicousUTRF-distichus_contig99380 1776..1805 -
1690886191.001908-UTR-F-distichus_contig99380:1775..18051690886191.001908-UTR-F-distichus_contig99380:1775..1805Fucus distichus monoicousUTRF-distichus_contig99380 1776..1805 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig99380.19380.1prot_F-distichus_contig99380.19380.1Fucus distichus monoicouspolypeptideF-distichus_contig99380 1314..1775 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig99380.19380.1

>prot_F-distichus_contig99380.19380.1 ID=prot_F-distichus_contig99380.19380.1|Name=mRNA_F-distichus_contig99380.19380.1|organism=Fucus distichus monoicous|type=polypeptide|length=154bp
MRETKKVESQCVRDEEGGLLRDKRRIRERRVRFFRSLPDVKSDTLDPDIP
TRLPQHPVKSALGAEPTEEEVATAVKALANAKAVGPGGLPAELLKLRLQQ
NQTIILEFHRLTTLIWREERVPQQWRGGVVTRLHKKNDRAKCRNYRGISL
VSRA
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mRNA from alignment at F-distichus_contig99380:1314..1805-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig99380.19380.1 ID=mRNA_F-distichus_contig99380.19380.1|Name=mRNA_F-distichus_contig99380.19380.1|organism=Fucus distichus monoicous|type=mRNA|length=492bp|location=Sequence derived from alignment at F-distichus_contig99380:1314..1805- (Fucus distichus monoicous)
GAATTCTTCCCAAACATCAAATCGGTGCGGATGAGGGAGACAAAGAAGGT CGAATCGCAGTGCGTCCGTGACGAGGAAGGGGGACTGCTGCGAGACAAGC GGCGTATCCGCGAGAGGAGGGTGCGATTCTTCCGCTCGCTGCCGGACGTG AAATCCGACACACTCGATCCCGACATCCCAACGAGGCTGCCGCAGCATCC CGTTAAGAGTGCCCTCGGGGCCGAGCCCACGGAGGAGGAAGTTGCCACAG CGGTGAAGGCACTGGCAAACGCGAAAGCAGTGGGGCCGGGTGGTCTTCCC GCGGAACTGCTGAAACTCAGACTACAACAGAACCAGACCATAATCCTAGA GTTCCATCGACTCACCACCCTCATCTGGCGCGAGGAAAGAGTCCCACAGC AATGGAGAGGCGGGGTAGTTACTCGACTCCACAAGAAGAACGACAGGGCA AAGTGCAGAAATTACCGCGGCATCTCGCTCGTGAGTCGTGCC
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Coding sequence (CDS) from alignment at F-distichus_contig99380:1314..1805-

>mRNA_F-distichus_contig99380.19380.1 ID=mRNA_F-distichus_contig99380.19380.1|Name=mRNA_F-distichus_contig99380.19380.1|organism=Fucus distichus monoicous|type=CDS|length=924bp|location=Sequence derived from alignment at F-distichus_contig99380:1314..1805- (Fucus distichus monoicous)
ATGAGGGAGACAAAGAAGGTCGAATCGCAGTGCGTCCGTGACGAGGAAGG
GGGACTGCTGCGAGACAAGCGGCGTATCCGCGAGAGGAGGGTGCGATTCT
TCCGCTCGCTGCCGGACGTGAAATCCGACACACTCGATCCCGACATCCCA
ACGAGGCTGCCGCAGCATCCCGTTAAGAGTGCCCTCGGGGCCGAGCCCAC
GGAGGAGGAAGTTGCCACAGCGGTGAAGGCACTGGCAAACGCGAAAGCAG
TGGGGCCGGGTGGTCTTCCCGCGGAACTGCTGAAACTCAGACTACAACAG
AACCAGACCATAATCCTAGAGTTCCATCGACTCACCACCCTCATCTGGCG
CGAGGAAAGAGTCCCACAGCAATGGAGAGGCGGGGTAGTTACTCGACTCC
ACAAGAAGAACGACAGGGCAAAGTGCAGAAATTACCGCGGCATCTCGCTC
GTGAGTCGTGCCATGAGGGAGACAAAGAAGGTCGAATCGCAGTGCGTCCG
TGACGAGGAAGGGGGACTGCTGCGAGACAAGCGGCGTATCCGCGAGAGGA
GGGTGCGATTCTTCCGCTCGCTGCCGGACGTGAAATCCGACACACTCGAT
CCCGACATCCCAACGAGGCTGCCGCAGCATCCCGTTAAGAGTGCCCTCGG
GGCCGAGCCCACGGAGGAGGAAGTTGCCACAGCGGTGAAGGCACTGGCAA
ACGCGAAAGCAGTGGGGCCGGGTGGTCTTCCCGCGGAACTGCTGAAACTC
AGACTACAACAGAACCAGACCATAATCCTAGAGTTCCATCGACTCACCAC
CCTCATCTGGCGCGAGGAAAGAGTCCCACAGCAATGGAGAGGCGGGGTAG
TTACTCGACTCCACAAGAAGAACGACAGGGCAAAGTGCAGAAATTACCGC
GGCATCTCGCTCGTGAGTCGTGCC
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