mRNA_F-distichus_contig99372.19379.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig99372.19379.1
Unique NamemRNA_F-distichus_contig99372.19379.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig99372.19379.1 vs. uniprot
Match: A0A6H5KWW6_9PHAE (Dynamin-type G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KWW6_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 5.240e-17
Identity = 42/65 (64.62%), Postives = 53/65 (81.54%), Query Frame = 1 
Query:    1 PDPKVVNWFADRSDLILLVFEAQKLDVPEEFRQVMAAVMAQHGDR--VRVVLNKGHDVEVDRLIK 189
            P P+VV WFADRSDLI LVF++ KLD+ EEFR+V+ A+ A+HGDR  VRVVLNK  +V+ DRL+K
Sbjct:  389 PYPEVVKWFADRSDLIFLVFDSHKLDMGEEFREVVRAI-AEHGDRASVRVVLNKAQEVDDDRLLK 452
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BLAST of mRNA_F-distichus_contig99372.19379.1 vs. uniprot
Match: A0A835Z9Q7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9Q7_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 8.150e-15
Identity = 35/58 (60.34%), Postives = 47/58 (81.03%), Query Frame = 1 
Query:   16 VNWFADRSDLILLVFEAQKLDVPEEFRQVMAAVMAQHGDRVRVVLNKGHDVEVDRLIK 189
            V WFADRSD+ILLVF+  KLD+ EEFRQ++ A+ A H +++R+VLNK  +V+ DRLIK
Sbjct:  176 VKWFADRSDMILLVFDVHKLDISEEFRQLIGALGA-HAEKLRIVLNKAQEVDADRLIK 232
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BLAST of mRNA_F-distichus_contig99372.19379.1 vs. uniprot
Match: A0A662XBB2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XBB2_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 3.780e-12
Identity = 32/60 (53.33%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:   10 KVVNWFADRSDLILLVFEAQKLDVPEEFRQVMAAVMAQHGDRVRVVLNKGHDVEVDRLIK 189
            +V  WFA+RSDLILL+F+A KLD+ +EF++V+  V+  HGD+VR VLNK   V+  RL++
Sbjct:   31 QVARWFAERSDLILLLFDAHKLDISDEFQRVIE-VLQGHGDKVRCVLNKADQVDQQRLLR 89
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BLAST of mRNA_F-distichus_contig99372.19379.1 vs. uniprot
Match: A0A835YIA7_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIA7_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 6.040e-12
Identity = 31/61 (50.82%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:    7 PKVVNWFADRSDLILLVFEAQKLDVPEEFRQVMAAVMAQHGDRVRVVLNKGHDVEVDRLIK 189
            P V  WFADRSDLI+L+F+A KLD+ +E R VM  ++ +H D+VR+VLNK   +E   L++
Sbjct:  126 PVVARWFADRSDLIVLIFDAHKLDISDELRDVMEGLV-EHQDKVRIVLNKADQIERAHLMR 185
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BLAST of mRNA_F-distichus_contig99372.19379.1 vs. uniprot
Match: B8C4H7_THAPS (Eh domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C4H7_THAPS)

HSP 1 Score: 68.2 bits (165), Expect = 6.770e-12
Identity = 29/60 (48.33%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:   10 KVVNWFADRSDLILLVFEAQKLDVPEEFRQVMAAVMAQHGDRVRVVLNKGHDVEVDRLIK 189
            +V  WFADRSDLILL+F+A KLD+ +EF+ V+  +   +GD++R VLNK   V  ++L++
Sbjct:  160 QVAKWFADRSDLILLLFDAHKLDISDEFKNVIDTISQHNGDKIRCVLNKADAVTREQLVR 219
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BLAST of mRNA_F-distichus_contig99372.19379.1 vs. uniprot
Match: L1JQK0_GUITC (Dynamin-type G domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JQK0_GUITC)

HSP 1 Score: 67.4 bits (163), Expect = 9.850e-12
Identity = 29/61 (47.54%), Postives = 46/61 (75.41%), Query Frame = 1 
Query:    7 PKVVNWFADRSDLILLVFEAQKLDVPEEFRQVMAAVMAQHGDRVRVVLNKGHDVEVDRLIK 189
            PKV  WFA+RSDLIL++F+A KLD+ +E ++V+ A +A H D++R++LNK   V   +L++
Sbjct:  166 PKVCRWFAERSDLILILFDAHKLDISDELKEVIQA-LADHDDKIRIILNKSDQVTPRQLMR 225
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BLAST of mRNA_F-distichus_contig99372.19379.1 vs. uniprot
Match: A0A830H7J3_9CHLO (Uncharacterized protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830H7J3_9CHLO)

HSP 1 Score: 67.8 bits (164), Expect = 1.000e-11
Identity = 31/61 (50.82%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:    7 PKVVNWFADRSDLILLVFEAQKLDVPEEFRQVMAAVMAQHGDRVRVVLNKGHDVEVDRLIK 189
            P VV WFA+RSDLILL+F+  KLD+ +EFR+V++A    H D++RV+LNK + V    L++
Sbjct:  365 PGVVRWFAERSDLILLMFDPFKLDISDEFRRVISACSG-HDDKIRVILNKANSVSAQHLMR 424
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BLAST of mRNA_F-distichus_contig99372.19379.1 vs. uniprot
Match: A0A7S4NK84_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4NK84_GUITH)

HSP 1 Score: 67.4 bits (163), Expect = 1.290e-11
Identity = 29/61 (47.54%), Postives = 46/61 (75.41%), Query Frame = 1 
Query:    7 PKVVNWFADRSDLILLVFEAQKLDVPEEFRQVMAAVMAQHGDRVRVVLNKGHDVEVDRLIK 189
            PKV  WFA+RSDLIL++F+A KLD+ +E ++V+ A +A H D++R++LNK   V   +L++
Sbjct:   72 PKVCRWFAERSDLILILFDAHKLDISDELKEVIQA-LADHDDKIRIILNKSDQVTPRQLMR 131
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BLAST of mRNA_F-distichus_contig99372.19379.1 vs. uniprot
Match: A0A2I0JSM9_PUNGR (Dynamin-type G domain-containing protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0JSM9_PUNGR)

HSP 1 Score: 66.6 bits (161), Expect = 2.450e-11
Identity = 29/59 (49.15%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:   13 VVNWFADRSDLILLVFEAQKLDVPEEFRQVMAAVMAQHGDRVRVVLNKGHDVEVDRLIK 189
            V +WFA + DLILL+F+  KLD+ +EFRQV++++   H D++RVVLNK H V+  +L++
Sbjct:  170 VTSWFATKCDLILLLFDPHKLDISDEFRQVISSLHG-HDDKIRVVLNKAHQVDTQQLMR 227
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BLAST of mRNA_F-distichus_contig99372.19379.1 vs. uniprot
Match: H3G7R1_PHYRM (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=H3G7R1_PHYRM)

HSP 1 Score: 66.6 bits (161), Expect = 2.550e-11
Identity = 31/60 (51.67%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:   10 KVVNWFADRSDLILLVFEAQKLDVPEEFRQVMAAVMAQHGDRVRVVLNKGHDVEVDRLIK 189
            +V  WFA+RSDLILL+F+A KLD+ +EF++V+  V+  H D+VR VLNK   V+  RL++
Sbjct:  153 QVARWFAERSDLILLLFDAHKLDISDEFQRVIE-VLQGHSDKVRCVLNKADQVDQQRLLR 211
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig99372.19379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KWW6_9PHAE5.240e-1764.62Dynamin-type G domain-containing protein n=2 Tax=E... [more]
A0A835Z9Q7_9STRA8.150e-1560.34Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A662XBB2_9STRA3.780e-1253.33Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
A0A835YIA7_9STRA6.040e-1250.82P-loop containing nucleoside triphosphate hydrolas... [more]
B8C4H7_THAPS6.770e-1248.33Eh domain-containing protein (Fragment) n=1 Tax=Th... [more]
L1JQK0_GUITC9.850e-1247.54Dynamin-type G domain-containing protein n=1 Tax=G... [more]
A0A830H7J3_9CHLO1.000e-1150.82Uncharacterized protein n=1 Tax=Pycnococcus provas... [more]
A0A7S4NK84_GUITH1.290e-1147.54Hypothetical protein (Fragment) n=1 Tax=Guillardia... [more]
A0A2I0JSM9_PUNGR2.450e-1149.15Dynamin-type G domain-containing protein n=1 Tax=P... [more]
H3G7R1_PHYRM2.550e-1151.67Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig99372contigF-distichus_contig99372:17..1153 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.3
Seed ortholog evalue1.8e-16
Seed eggNOG ortholog2880.D7FUQ8
KEGG koko:K12483
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
EggNOG free text desc.endocytic recycling
EggNOG OGsKOG1954@1,KOG1954@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131,ko04147
Exons2
Model size189
Cds size189
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931175.185856-CDS-F-distichus_contig99372:16..1511622931175.185856-CDS-F-distichus_contig99372:16..151Fucus distichus monoicousCDSF-distichus_contig99372 17..151 +
1690886190.9606147-CDS-F-distichus_contig99372:16..1511690886190.9606147-CDS-F-distichus_contig99372:16..151Fucus distichus monoicousCDSF-distichus_contig99372 17..151 +
1622931175.2119753-CDS-F-distichus_contig99372:1099..11531622931175.2119753-CDS-F-distichus_contig99372:1099..1153Fucus distichus monoicousCDSF-distichus_contig99372 1100..1153 +
1690886190.9751103-CDS-F-distichus_contig99372:1099..11531690886190.9751103-CDS-F-distichus_contig99372:1099..1153Fucus distichus monoicousCDSF-distichus_contig99372 1100..1153 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig99372.19379.1prot_F-distichus_contig99372.19379.1Fucus distichus monoicouspolypeptideF-distichus_contig99372 17..1153 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig99372.19379.1

>prot_F-distichus_contig99372.19379.1 ID=prot_F-distichus_contig99372.19379.1|Name=mRNA_F-distichus_contig99372.19379.1|organism=Fucus distichus monoicous|type=polypeptide|length=63bp
PDPKVVNWFADRSDLILLVFEAQKLDVPEEFRQVMAAVMAQHGDRVRVVL
NKGHDVEVDRLIK
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mRNA from alignment at F-distichus_contig99372:17..1153+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig99372.19379.1 ID=mRNA_F-distichus_contig99372.19379.1|Name=mRNA_F-distichus_contig99372.19379.1|organism=Fucus distichus monoicous|type=mRNA|length=1137bp|location=Sequence derived from alignment at F-distichus_contig99372:17..1153+ (Fucus distichus monoicous)
CCGGACCCGAAGGTGGTCAATTGGTTCGCGGATAGATCGGATCTGATCCT
CCTCGTTTTCGAGGCGCAGAAGCTGGATGTCCCCGAGGAGTTCCGCCAAG
TGATGGCGGCCGTCATGGCACAACACGGAGACAGGGTGAGTCAAAGCTAC
TGAATGGTCCAATTTTACTGCAGTTGTCTATCAAACTAAATAGTGTTAGA
CCGTACTCCATAACGCTACACACACCATCTGTGACTACGTTAGTAGTACA
TTATACTGCACCGGTACTCTACCGCTACATATTGTGTATATTGTGTACTA
TTTTTTTTTCTTTTACCGCCAGGTGCTTCGTATTCAATCCTTTTTACTGA
ACTGATTATATTCCCACTAAATTACACTGCACTCCACGGTACCATACATT
GCTATAACCGCCTCATTACATTATATAAAATACGTAGTACTACACCATAA
CATTTTTCACGTATATAGCACTACACCATAATATTTAGCCCTTGCATAAC
TCTACACCGTGATATTTTACACTTACATAACACTACGCCATCATATTTTA
CATGAGACTATACCGTACGTTATAATCGATCTATATTCTAGAGGGATACT
CCCAACTAAATCTTACCAGGTACGAGTTTTCGGTGCACTACGTGGACAAT
TTTATACCCCAGTACTTTTTTTTCTCTCTCTTAACACAAAGAATTGATTA
CAACCGAATTCAACATCAAAGTATATCTGGTCCACACACACACACACAGA
CTCCAACTAACAACTATTGGAAGCAAAAGCTCGACCACTAGAGGCTAGCC
GTGGTGTACAGTGCAATATACAGTAGTATTGTACCGCACTGTTGTAGATT
TTTTTTTGTGTGTGTCCTGTCTTCGTTTTTTTTTGTCCTTTTTCTGTCCT
TTTTTTTCCCTTCTTTTTGTCAAAATAAACAAAGACAAAAAGAAGCCACG
CTGGGGGAGGGGGAGCTTCTTTCTTCCCCTTTGTGAACTCCGGTCGAGCT
TTACTGTCTACTTGAGCAAATATTCATGAAAACCGGTCGAGCTTTACTGT
CTACTTGCGCAAATATTCATGAAAACGTAACAGGTTCGTGTGGTGCTGAA
CAAGGGGCACGACGTGGAAGTCGACCGACTCATCAAG
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Coding sequence (CDS) from alignment at F-distichus_contig99372:17..1153+

>mRNA_F-distichus_contig99372.19379.1 ID=mRNA_F-distichus_contig99372.19379.1|Name=mRNA_F-distichus_contig99372.19379.1|organism=Fucus distichus monoicous|type=CDS|length=378bp|location=Sequence derived from alignment at F-distichus_contig99372:17..1153+ (Fucus distichus monoicous)
CCGGACCCGAAGGTGGTCAATTGGTTCGCGGATAGATCGGATCTGATCCT
CCTCGTTTTCGAGGCGCAGAAGCTGGATGTCCCCGAGGAGTTCCGCCAAG
TGATGGCGGCCGTCATGGCACAACACGGAGACAGGCCGGACCCGAAGGTG
GTCAATTGGTTCGCGGATAGATCGGATCTGATCCTCCTCGTTTTCGAGGC
GCAGAAGCTGGATGTCCCCGAGGAGTTCCGCCAAGTGATGGCGGCCGTCA
TGGCACAACACGGAGACAGGGTTCGTGTGGTGCTGAACAAGGGGCACGAC
GTGGAAGTCGACCGACTCATCAAGGTTCGTGTGGTGCTGAACAAGGGGCA
CGACGTGGAAGTCGACCGACTCATCAAG
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