mRNA_F-distichus_contig99342.19377.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig99342.19377.1
Unique NamemRNA_F-distichus_contig99342.19377.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig99342.19377.1 vs. uniprot
Match: D7FSP6_ECTSI (Nudix hydrolase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSP6_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 2.130e-29
Identity = 52/61 (85.25%), Postives = 59/61 (96.72%), Query Frame = 1 
Query:    1 VDVLGILRCDWAEVASLVGVAVTPVVGFLGNLSREQITPNPDEVSSCFTIPIRYLMEEDRW 183
            VDVLG+LRCDW+EVASL+GVAVTPVVGFLGNLS+EQI PNPDEVS CFTIP+R+L+EEDRW
Sbjct:  451 VDVLGVLRCDWSEVASLIGVAVTPVVGFLGNLSQEQIHPNPDEVSHCFTIPVRFLLEEDRW 511
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BLAST of mRNA_F-distichus_contig99342.19377.1 vs. uniprot
Match: A0A6H5JIG8_9PHAE (Nudix hydrolase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIG8_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 1.390e-28
Identity = 51/61 (83.61%), Postives = 58/61 (95.08%), Query Frame = 1 
Query:    1 VDVLGILRCDWAEVASLVGVAVTPVVGFLGNLSREQITPNPDEVSSCFTIPIRYLMEEDRW 183
            VDVLG+LRCDW+EVASL+GVAVTPVVGFLGNLS EQI PNPDEVS CFTIP+R+L++EDRW
Sbjct:  441 VDVLGVLRCDWSEVASLIGVAVTPVVGFLGNLSLEQIHPNPDEVSHCFTIPVRFLLQEDRW 501
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BLAST of mRNA_F-distichus_contig99342.19377.1 vs. uniprot
Match: A0A7S2USV2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USV2_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 3.760e-20
Identity = 37/61 (60.66%), Postives = 52/61 (85.25%), Query Frame = 1 
Query:    1 VDVLGILRCDWAEVASLVGVAVTPVVGFLGNLSREQITPNPDEVSSCFTIPIRYLMEEDRW 183
            V++LG+LRCDW EV S+VGVAVTPVVGF+ +LS +++ PNPDEVS+CF++PI+ L++   W
Sbjct:  271 VEILGVLRCDWGEVESIVGVAVTPVVGFIDDLSLKKLKPNPDEVSNCFSVPIKSLLKRKNW 331
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BLAST of mRNA_F-distichus_contig99342.19377.1 vs. uniprot
Match: A0A4D9DAL0_9STRA (Nudix hydrolase domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DAL0_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.440e-19
Identity = 35/61 (57.38%), Postives = 50/61 (81.97%), Query Frame = 1 
Query:    1 VDVLGILRCDWAEVASLVGVAVTPVVGFLGNLSREQITPNPDEVSSCFTIPIRYLMEEDRW 183
            VDVLG+LRCDW+EV  + G+ VTPVVGFLG+L+ ++++PNP EV+ CFTIP+  L++ + W
Sbjct:  220 VDVLGVLRCDWSEVHKITGIGVTPVVGFLGDLTEKELSPNPKEVAECFTIPLATLLDVEHW 280
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BLAST of mRNA_F-distichus_contig99342.19377.1 vs. uniprot
Match: A0A7S0CGN4_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CGN4_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.660e-19
Identity = 36/61 (59.02%), Postives = 46/61 (75.41%), Query Frame = 1 
Query:    1 VDVLGILRCDWAEVASLVGVAVTPVVGFLGNLSREQITPNPDEVSSCFTIPIRYLMEEDRW 183
            V VLGILRC+W EVA + G+AVTPVV F+G+L    + PNPDEV+ CFT+P+   +E DRW
Sbjct:  103 VSVLGILRCNWGEVAQITGIAVTPVVCFIGDLDEMNLHPNPDEVAECFTVPLSSFLEHDRW 163
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BLAST of mRNA_F-distichus_contig99342.19377.1 vs. uniprot
Match: M4BKA1_HYAAE (Nudix hydrolase domain-containing protein n=3 Tax=Peronosporaceae TaxID=4777 RepID=M4BKA1_HYAAE)

HSP 1 Score: 85.9 bits (211), Expect = 1.080e-18
Identity = 35/61 (57.38%), Postives = 47/61 (77.05%), Query Frame = 1 
Query:    1 VDVLGILRCDWAEVASLVGVAVTPVVGFLGNLSREQITPNPDEVSSCFTIPIRYLMEEDRW 183
            VDVLG+LRCDW+ V S+ G+AVTP+VGF+G +S + +  N DEV S FT+P+R LM +D W
Sbjct:  191 VDVLGVLRCDWSSVTSITGIAVTPIVGFIGEMSDQTVAINEDEVESLFTVPLRDLMNQDNW 251
[Close]
BLAST of mRNA_F-distichus_contig99342.19377.1 vs. uniprot
Match: W2PIJ1_PHYPN (Nudix hydrolase domain-containing protein n=13 Tax=Phytophthora TaxID=4783 RepID=W2PIJ1_PHYPN)

HSP 1 Score: 85.5 bits (210), Expect = 2.920e-18
Identity = 36/61 (59.02%), Postives = 46/61 (75.41%), Query Frame = 1 
Query:    1 VDVLGILRCDWAEVASLVGVAVTPVVGFLGNLSREQITPNPDEVSSCFTIPIRYLMEEDRW 183
            VDVLG+LRCDW+ V S+ G+AVTPVVGF+G +S   +  N DEV S FT+P+R LM +D W
Sbjct:  263 VDVLGVLRCDWSSVTSITGIAVTPVVGFIGEMSDRTVAINEDEVESLFTVPLRDLMNQDNW 323
[Close]
BLAST of mRNA_F-distichus_contig99342.19377.1 vs. uniprot
Match: A0A6A3N775_9STRA (Nudix hydrolase domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3N775_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 2.990e-18
Identity = 35/61 (57.38%), Postives = 48/61 (78.69%), Query Frame = 1 
Query:    1 VDVLGILRCDWAEVASLVGVAVTPVVGFLGNLSREQITPNPDEVSSCFTIPIRYLMEEDRW 183
            VDVLG+LRCDW+ V S+ G+AVTPVVGF+G +S + +  N  EV S FT+P+R LM++D+W
Sbjct:  266 VDVLGVLRCDWSSVTSITGIAVTPVVGFIGEMSDQTVAINEQEVESLFTVPLRDLMDQDKW 326
[Close]
BLAST of mRNA_F-distichus_contig99342.19377.1 vs. uniprot
Match: A0A7S2MRY0_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MRY0_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 3.280e-18
Identity = 33/61 (54.10%), Postives = 47/61 (77.05%), Query Frame = 1 
Query:    1 VDVLGILRCDWAEVASLVGVAVTPVVGFLGNLSREQITPNPDEVSSCFTIPIRYLMEEDRW 183
            V VLG+LRC+W EV  L GVAVTPVV F+G +  + + P+PDEV+ CFT+P+ +L++ +RW
Sbjct:   45 VTVLGVLRCNWGEVHHLTGVAVTPVVCFIGEIGDKILKPSPDEVAECFTVPLAFLLDRERW 105
[Close]
BLAST of mRNA_F-distichus_contig99342.19377.1 vs. uniprot
Match: A0A3R7GYS2_9STRA (Nudix hydrolase domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GYS2_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 7.430e-18
Identity = 35/61 (57.38%), Postives = 46/61 (75.41%), Query Frame = 1 
Query:    1 VDVLGILRCDWAEVASLVGVAVTPVVGFLGNLSREQITPNPDEVSSCFTIPIRYLMEEDRW 183
            VDVLG+LRCDW+ V S+ G+AVTPVVGF+G +S + +  N  EV S FT+P+R LM +D W
Sbjct:  257 VDVLGVLRCDWSSVTSITGIAVTPVVGFIGEMSDQTVAINEQEVESLFTVPVRDLMNQDNW 317
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig99342.19377.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSP6_ECTSI2.130e-2985.25Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A6H5JIG8_9PHAE1.390e-2883.61Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A7S2USV2_9STRA3.760e-2060.66Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A4D9DAL0_9STRA1.440e-1957.38Nudix hydrolase domain-containing protein n=3 Tax=... [more]
A0A7S0CGN4_9STRA1.660e-1959.02Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
M4BKA1_HYAAE1.080e-1857.38Nudix hydrolase domain-containing protein n=3 Tax=... [more]
W2PIJ1_PHYPN2.920e-1859.02Nudix hydrolase domain-containing protein n=13 Tax... [more]
A0A6A3N775_9STRA2.990e-1857.38Nudix hydrolase domain-containing protein n=4 Tax=... [more]
A0A7S2MRY0_9STRA3.280e-1854.10Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A3R7GYS2_9STRA7.430e-1857.38Nudix hydrolase domain-containing protein n=3 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig99342contigF-distichus_contig99342:51..1620 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.9
Seed ortholog evalue1.7e-24
Seed eggNOG ortholog2880.D7FSP6
KEGG koko:K18665
Hectar predicted targeting categoryother localisation
EggNOG free text desc.CoA pyrophosphatase activity
EggNOG OGsCOG0494@1,KOG3069@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons2
Model size183
Cds size183
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931175.0487106-CDS-F-distichus_contig99342:50..1041622931175.0487106-CDS-F-distichus_contig99342:50..104Fucus distichus monoicousCDSF-distichus_contig99342 51..104 -
1690886190.909076-CDS-F-distichus_contig99342:50..1041690886190.909076-CDS-F-distichus_contig99342:50..104Fucus distichus monoicousCDSF-distichus_contig99342 51..104 -
1622931175.0601206-CDS-F-distichus_contig99342:1491..16201622931175.0601206-CDS-F-distichus_contig99342:1491..1620Fucus distichus monoicousCDSF-distichus_contig99342 1492..1620 -
1690886190.9223065-CDS-F-distichus_contig99342:1491..16201690886190.9223065-CDS-F-distichus_contig99342:1491..1620Fucus distichus monoicousCDSF-distichus_contig99342 1492..1620 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig99342.19377.1prot_F-distichus_contig99342.19377.1Fucus distichus monoicouspolypeptideF-distichus_contig99342 51..1620 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig99342.19377.1

>prot_F-distichus_contig99342.19377.1 ID=prot_F-distichus_contig99342.19377.1|Name=mRNA_F-distichus_contig99342.19377.1|organism=Fucus distichus monoicous|type=polypeptide|length=61bp
VDVLGILRCDWAEVASLVGVAVTPVVGFLGNLSREQITPNPDEVSSCFTI
PIRYLMEEDRW
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mRNA from alignment at F-distichus_contig99342:51..1620-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig99342.19377.1 ID=mRNA_F-distichus_contig99342.19377.1|Name=mRNA_F-distichus_contig99342.19377.1|organism=Fucus distichus monoicous|type=mRNA|length=1570bp|location=Sequence derived from alignment at F-distichus_contig99342:51..1620- (Fucus distichus monoicous)
GTTGACGTCCTTGGGATACTGCGCTGCGACTGGGCCGAGGTGGCCTCACT
CGTTGGCGTCGCCGTAACACCTGTCGTGGGGTTCCTGGGGAATCTGTCGC
GCGAGCAAATCACTCCCAACCCCGACGAGGTATTTTCTATTTAGGGGGTT
CGATGATAACAAACAACCACAACATCAGCGTAACGACAGTCGTTGGAGTT
TTGTTGTGCAATCAAGAGAACGCTGTTTATAACTAATTCGCGATGCATTA
TTATGTGTCGCAATTGTTTTTGCATTTATCTCTAATTAGACTTATTTAGT
GTTTGGTATGTAAAGTACAGTACAGAGATGATGCATTGTTCTTGGGGTCA
TTTATTCAGTATCGACATATATATACATATACCTATATGCATGTATCGTC
ATCATATATATTAATAGTAGACTAGTCCATGCACCAACCGGATATGTTGA
CAATCCTTCTCGTGGTTAGCTGAGCCGTTTTTTTTTGTTTTTTTTTCCCC
CAATGTCTATCGCGATCGGCCGTGGCCCGTCCCGCGTCAGCCCCGGTCAT
TCTCCACACACACCCTGGCTGAATCAGTACCCGATTCGGTACACCCTCGA
GAGAGAGAGATTAAACGTGGCTTGTTTCGTCTTATTTTGCCCTGCCAACC
AAGAAGCGAACGGCAACCGCAGTGTCAGCCTTTGCTCCTCTTTCGATGTG
GTTTAGTTTTGCTGTTGCCGTTGAATTTTACTGTCCAAGAGAGCTATACA
GTAGACTATAGTATTAACGGTACCATGCATGCACGTGGGCACAAATATTT
TCGGCTGCTGTCAACCCGTATTTTTTCTTTTATCCGTAACCAAGTGGTTT
GTGGTCAGGGGACGCCAACCCAGTAGACTATTAATAGTGGTTGTCGAGAA
AATGTTCCTGCGGCAGTAAGGTATCAATCGCTAGCCTTGGCCACACCTTT
TCCCGTTTCTCCCTCACACTCTACCAATGGTAGTAGGGTGTTGATAGGGT
AAGTGCGACGAGGCGAAGCCGTTGTAACGTTATAGAGCTATCGCTTTCCC
AGAGAGGGCATTGGGTCCAGATCATCCGGGTCTTGCCACCGGGTGTTGAG
CCGCGTGGTGAGATCTTGATGCTCCGGACCCAAAGCCTTCTCTCCGATAG
CGAGGGCTCTGACGGTACAGCGGCTCCAGCCTCGTCGTACTCGCCCTATC
AACAGTAATAGTAGTATTGATAGCATGCGAGGGAAAAACGGTATATAGGT
GTGATACAAAGGCTGGTGATTTTTTTTTTACGGCGGAGGAACGTTTTCTC
AACAACCAGCGGGGTTTTGAGTTCTTTATAGTTGCATGTATTGACGGGGA
AAATCATAGAGAGACGTGCGCATTTTTGTCGCCCTTTCCAAAAACATGGA
TGGGATTGAGAAGAGAACCTTACTCTGTGAAAACCTTGAATATCGCGAAA
TGTCTCCGAGGGCGCGTGTTATGTTGCGTTTTTGTTGTTGTTGTTGTTGT
TGTCCTATTTCCACAGGTGTCTTCGTGTTTCACCATTCCAATCCGCTACT
TGATGGAAGAGGACAGGTGG
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Coding sequence (CDS) from alignment at F-distichus_contig99342:51..1620-

>mRNA_F-distichus_contig99342.19377.1 ID=mRNA_F-distichus_contig99342.19377.1|Name=mRNA_F-distichus_contig99342.19377.1|organism=Fucus distichus monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at F-distichus_contig99342:51..1620- (Fucus distichus monoicous)
GTTGACGTCCTTGGGATACTGCGCTGCGACTGGGCCGAGGTGGCCTCACT
CGTTGGCGTCGCCGTAACACCTGTCGTGGGGTTCCTGGGGAATCTGTCGC
GCGAGCAAATCACTCCCAACCCCGACGAGGTTGACGTCCTTGGGATACTG
CGCTGCGACTGGGCCGAGGTGGCCTCACTCGTTGGCGTCGCCGTAACACC
TGTCGTGGGGTTCCTGGGGAATCTGTCGCGCGAGCAAATCACTCCCAACC
CCGACGAGGTGTCTTCGTGTTTCACCATTCCAATCCGCTACTTGATGGAA
GAGGACAGGTGGGTGTCTTCGTGTTTCACCATTCCAATCCGCTACTTGAT
GGAAGAGGACAGGTGG
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