mRNA_F-distichus_contig99335.19376.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig99335.19376.1
Unique NamemRNA_F-distichus_contig99335.19376.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig99335.19376.1 vs. uniprot
Match: A0A6H5KNP1_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNP1_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 8.660e-28
Identity = 54/86 (62.79%), Postives = 65/86 (75.58%), Query Frame = 1
Query:    1 VDAGHLKGEWKGVVLVATAKDTNNTLVLVALAICDKENASNFSFLLTEMKKNPHMTALLSSTGTTIYSDEHPGISAALKTHASRCI 258
            VD GH+KG WKG+VLVA  KDTNN LVLVA  ICDKEN++N+ FL +EMKKN H+ A L S  TTIYSDE+ GI +A++  AS  I
Sbjct:   95 VDGGHMKGTWKGMVLVAAGKDTNNNLVLVAFVICDKENSTNYEFLFSEMKKNVHLKAPLESPLTTIYSDENNGIKSAIEIEASDII 180          
BLAST of mRNA_F-distichus_contig99335.19376.1 vs. uniprot
Match: A0A6H5JC04_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC04_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 1.810e-15
Identity = 39/79 (49.37%), Postives = 52/79 (65.82%), Query Frame = 1
Query:    1 VDAGHLKGEWKGVVLVATAKDTNNTLVLVALAICDKENASNFSFLLTEMKKNPHMTALLSSTGTTIYSDEHPGISAALK 237
            +DAGHLKG WKGV+ V    D+NN ++ V+  + DKENA+N+ FLL +  +N HM  LLSS   T + D H G  AAL+
Sbjct:  250 MDAGHLKGSWKGVMYVLCMHDSNNKIIHVSTVLADKENATNYKFLLQQTCRNEHMHRLLSSGEVTFFIDGHKGSPAALR 328          
BLAST of mRNA_F-distichus_contig99335.19376.1 vs. uniprot
Match: D7G6Q0_ECTSI (MULE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Q0_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 3.530e-15
Identity = 39/79 (49.37%), Postives = 51/79 (64.56%), Query Frame = 1
Query:    1 VDAGHLKGEWKGVVLVATAKDTNNTLVLVALAICDKENASNFSFLLTEMKKNPHMTALLSSTGTTIYSDEHPGISAALK 237
            +DAGHLKG W GV+ V    D+NN ++ V+  + DKENA+N+ FLL +  +N HM  LLSS   T Y D H G  AAL+
Sbjct:  164 MDAGHLKGSWHGVMYVLCMHDSNNKIIHVSTVLADKENATNYEFLLQQTCRNEHMQRLLSSGEVTFYIDGHKGSPAALR 242          
BLAST of mRNA_F-distichus_contig99335.19376.1 vs. uniprot
Match: A0A6H5KQH4_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQH4_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 4.470e-15
Identity = 36/79 (45.57%), Postives = 50/79 (63.29%), Query Frame = 1
Query:    1 VDAGHLKGEWKGVVLVATAKDTNNTLVLVALAICDKENASNFSFLLTEMKKNPHMTALLSSTGTTIYSDEHPGISAALK 237
            +DAGHL+  WKGV+      ++NN ++ V+  + DKENA+N+ FLL +  +N HM  LLSS   T Y D H G  AAL+
Sbjct:    4 MDAGHLRDSWKGVMYALCMHNSNNKIIHVSTVLADKENATNYKFLLQQTCRNEHMQRLLSSGEVTFYIDGHKGSPAALR 82          
BLAST of mRNA_F-distichus_contig99335.19376.1 vs. uniprot
Match: A0A6H5K7Q3_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Q3_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 6.890e-15
Identity = 39/79 (49.37%), Postives = 51/79 (64.56%), Query Frame = 1
Query:    1 VDAGHLKGEWKGVVLVATAKDTNNTLVLVALAICDKENASNFSFLLTEMKKNPHMTALLSSTGTTIYSDEHPGISAALK 237
            +DAGHLKG WKGV+ V    D+NN ++  +  I DKE+A+NF FLL +  +N HM  LLSS   T + D H G  AAL+
Sbjct:   28 MDAGHLKGSWKGVMYVLCMHDSNNKIIHFSTVIADKEHATNFKFLLQQTCRNEHMHRLLSSGEVTFFIDGHKGSPAALR 106          
BLAST of mRNA_F-distichus_contig99335.19376.1 vs. uniprot
Match: A0A6H5L9F2_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9F2_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 1.220e-14
Identity = 39/79 (49.37%), Postives = 50/79 (63.29%), Query Frame = 1
Query:    1 VDAGHLKGEWKGVVLVATAKDTNNTLVLVALAICDKENASNFSFLLTEMKKNPHMTALLSSTGTTIYSDEHPGISAALK 237
            +DAGHLKG WKGV+ V    D+NN ++ V   + DKENA+N+ FLL +  +N HM  LLSS   T   D H G  AAL+
Sbjct:   82 MDAGHLKGSWKGVMYVLCMHDSNNKIIHVTTVLADKENATNYKFLLQQTCRNEHMHRLLSSGEVTFVIDGHKGSPAALR 160          
BLAST of mRNA_F-distichus_contig99335.19376.1 vs. uniprot
Match: A0A6H5KCE5_9PHAE (MULE domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCE5_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 3.770e-14
Identity = 37/79 (46.84%), Postives = 50/79 (63.29%), Query Frame = 1
Query:    1 VDAGHLKGEWKGVVLVATAKDTNNTLVLVALAICDKENASNFSFLLTEMKKNPHMTALLSSTGTTIYSDEHPGISAALK 237
            +DAGHLKG WKGV+      D+NN ++ V+  + DKE A+N+ FLL +  +N HM  LLSS   T + D H G  AAL+
Sbjct:    4 MDAGHLKGSWKGVMYFLCMHDSNNKIIHVSTVLADKEIATNYRFLLQQTFRNEHMHRLLSSGEVTFFIDGHKGSPAALR 82          
BLAST of mRNA_F-distichus_contig99335.19376.1 vs. uniprot
Match: A0A6H5KDH4_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDH4_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 2.790e-13
Identity = 37/80 (46.25%), Postives = 50/80 (62.50%), Query Frame = 1
Query:    1 VDAGHLKGEWKGVVL-VATAKDTNNTLVLVALAICDKENASNFSFLLTEMKKNPHMTALLSSTGTTIYSDEHPGISAALK 237
            +DAGHLKG WKGV+  V    ++ N ++ V   + DKENA+N+ FLL +  +N HM  LLSS   T + D H G  AAL+
Sbjct:    4 MDAGHLKGSWKGVMYDVLCMHESKNKIIHVNTVLADKENATNYKFLLQQTCRNEHMHRLLSSGEVTFFIDGHKGSPAALR 83          
BLAST of mRNA_F-distichus_contig99335.19376.1 vs. uniprot
Match: UPI000DEC585F (uncharacterized protein LOC112756706 n=1 Tax=Arachis hypogaea TaxID=3818 RepID=UPI000DEC585F)

HSP 1 Score: 54.7 bits (130), Expect = 5.750e-7
Identity = 31/79 (39.24%), Postives = 50/79 (63.29%), Query Frame = 1
Query:    1 VDAGHLKGEWKGVVLVATAKDTNNTLVLVALAICDKENASNFSFLLTEMKKNPHMTALLSSTGTTIYSDEHPGISAALK 237
            +D  HL G++ G +LVA A+D N++++ VA A+ + ENA ++SF L+ ++   H+T      G  + SD H GI AAL+
Sbjct:   96 IDGTHLYGKYGGTLLVAIAQDGNSSILPVAFALVEGENAESWSFFLSHLRH--HVTP---QPGLLVISDRHNGIKAALE 169          
BLAST of mRNA_F-distichus_contig99335.19376.1 vs. uniprot
Match: A0A6H5K9J4_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9J4_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 8.690e-7
Identity = 27/59 (45.76%), Postives = 39/59 (66.10%), Query Frame = 1
Query:   61 DTNNTLVLVALAICDKENASNFSFLLTEMKKNPHMTALLSSTGTTIYSDEHPGISAALK 237
            D+NN ++ V+  + DKENA+N+ FLL ++ +N HM  LLSS   T + D H G  AAL+
Sbjct:    8 DSNNKIIHVSTVLADKENATNYKFLLQQICRNEHMHRLLSSGEVTFFIDGHKGSPAALR 66          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig99335.19376.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KNP1_9PHAE8.660e-2862.79MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JC04_9PHAE1.810e-1549.37MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G6Q0_ECTSI3.530e-1549.37MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KQH4_9PHAE4.470e-1545.57MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5K7Q3_9PHAE6.890e-1549.37MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5L9F2_9PHAE1.220e-1449.37MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KCE5_9PHAE3.770e-1446.84MULE domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A6H5KDH4_9PHAE2.790e-1346.25MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
UPI000DEC585F5.750e-739.24uncharacterized protein LOC112756706 n=1 Tax=Arach... [more]
A0A6H5K9J4_9PHAE8.690e-745.76MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig99335contigF-distichus_contig99335:1309..1578 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size270
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931175.0108185-CDS-F-distichus_contig99335:1308..15781622931175.0108185-CDS-F-distichus_contig99335:1308..1578Fucus distichus monoicousCDSF-distichus_contig99335 1309..1578 +
1690886190.8983004-CDS-F-distichus_contig99335:1308..15781690886190.8983004-CDS-F-distichus_contig99335:1308..1578Fucus distichus monoicousCDSF-distichus_contig99335 1309..1578 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig99335.19376.1prot_F-distichus_contig99335.19376.1Fucus distichus monoicouspolypeptideF-distichus_contig99335 1309..1578 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig99335.19376.1

>prot_F-distichus_contig99335.19376.1 ID=prot_F-distichus_contig99335.19376.1|Name=mRNA_F-distichus_contig99335.19376.1|organism=Fucus distichus monoicous|type=polypeptide|length=90bp
VDAGHLKGEWKGVVLVATAKDTNNTLVLVALAICDKENASNFSFLLTEMK
KNPHMTALLSSTGTTIYSDEHPGISAALKTHASRCISPPH
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mRNA from alignment at F-distichus_contig99335:1309..1578+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig99335.19376.1 ID=mRNA_F-distichus_contig99335.19376.1|Name=mRNA_F-distichus_contig99335.19376.1|organism=Fucus distichus monoicous|type=mRNA|length=270bp|location=Sequence derived from alignment at F-distichus_contig99335:1309..1578+ (Fucus distichus monoicous)
GTTGACGCCGGCCACCTGAAGGGGGAGTGGAAGGGGGTCGTGCTCGTTGC GACCGCCAAGGACACTAACAACACGTTGGTTTTGGTGGCCTTGGCCATTT GCGACAAGGAGAACGCGTCCAACTTCAGCTTTCTCCTGACTGAGATGAAG AAAAACCCCCACATGACGGCCCTCCTCTCGAGCACGGGAACCACCATCTA CTCGGACGAGCACCCGGGCATCTCTGCGGCGCTGAAGACGCATGCTTCCC GCTGCATTTCACCACCTCAT
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Coding sequence (CDS) from alignment at F-distichus_contig99335:1309..1578+

>mRNA_F-distichus_contig99335.19376.1 ID=mRNA_F-distichus_contig99335.19376.1|Name=mRNA_F-distichus_contig99335.19376.1|organism=Fucus distichus monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at F-distichus_contig99335:1309..1578+ (Fucus distichus monoicous)
GTTGACGCCGGCCACCTGAAGGGGGAGTGGAAGGGGGTCGTGCTCGTTGC
GACCGCCAAGGACACTAACAACACGTTGGTTTTGGTGGCCTTGGCCATTT
GCGACAAGGAGAACGCGTCCAACTTCAGCTTTCTCCTGACTGAGATGAAG
AAAAACCCCCACATGACGGCCCTCCTCTCGAGCACGGGAACCACCATCTA
CTCGGACGAGCACCCGGGCATCTCTGCGGCGCTGAAGACGCATGCTTCCC
GCTGCATTTCACCACCTCATGTTGACGCCGGCCACCTGAAGGGGGAGTGG
AAGGGGGTCGTGCTCGTTGCGACCGCCAAGGACACTAACAACACGTTGGT
TTTGGTGGCCTTGGCCATTTGCGACAAGGAGAACGCGTCCAACTTCAGCT
TTCTCCTGACTGAGATGAAGAAAAACCCCCACATGACGGCCCTCCTCTCG
AGCACGGGAACCACCATCTACTCGGACGAGCACCCGGGCATCTCTGCGGC
GCTGAAGACGCATGCTTCCCGCTGCATTTCACCACCTCAT
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