mRNA_F-distichus_contig9933.19375.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig9933.19375.1
Unique NamemRNA_F-distichus_contig9933.19375.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig9933.19375.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig9933contigF-distichus_contig9933:851..1991 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size521
Cds size519
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig9933.19375.1prot_F-distichus_contig9933.19375.1Fucus distichus monoicouspolypeptideF-distichus_contig9933 851..1991 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931174.942382-CDS-F-distichus_contig9933:850..10741622931174.942382-CDS-F-distichus_contig9933:850..1074Fucus distichus monoicousCDSF-distichus_contig9933 851..1074 +
1690886190.8601403-CDS-F-distichus_contig9933:850..10741690886190.8601403-CDS-F-distichus_contig9933:850..1074Fucus distichus monoicousCDSF-distichus_contig9933 851..1074 +
1622931174.9577622-CDS-F-distichus_contig9933:1430..15381622931174.9577622-CDS-F-distichus_contig9933:1430..1538Fucus distichus monoicousCDSF-distichus_contig9933 1431..1538 +
1690886190.8725526-CDS-F-distichus_contig9933:1430..15381690886190.8725526-CDS-F-distichus_contig9933:1430..1538Fucus distichus monoicousCDSF-distichus_contig9933 1431..1538 +
1622931174.9718544-CDS-F-distichus_contig9933:1804..19911622931174.9718544-CDS-F-distichus_contig9933:1804..1991Fucus distichus monoicousCDSF-distichus_contig9933 1805..1991 +
1690886190.8841612-CDS-F-distichus_contig9933:1804..19911690886190.8841612-CDS-F-distichus_contig9933:1804..1991Fucus distichus monoicousCDSF-distichus_contig9933 1805..1991 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig9933.19375.1

>prot_F-distichus_contig9933.19375.1 ID=prot_F-distichus_contig9933.19375.1|Name=mRNA_F-distichus_contig9933.19375.1|organism=Fucus distichus monoicous|type=polypeptide|length=173bp
MRNWTAKLESAKAVIARKILARGGKKNKRREEEMESEKEDDEEEDDGHSV
RPAAGGRERKSCATREPDEKYEKNSESSNDEKSVEGHKKRKTSTPGLLTP
EASSGAMAKSRCRALNTKIHDGSLLVRGSDLHDDPAPLNVTRAPKLAIVA
IDAESQMLTISKDDNCALRRVIQ
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mRNA from alignment at F-distichus_contig9933:851..1991+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig9933.19375.1 ID=mRNA_F-distichus_contig9933.19375.1|Name=mRNA_F-distichus_contig9933.19375.1|organism=Fucus distichus monoicous|type=mRNA|length=1141bp|location=Sequence derived from alignment at F-distichus_contig9933:851..1991+ (Fucus distichus monoicous)
ATGAGAAACTGGACGGCGAAGTTAGAGTCTGCCAAGGCTGTGATCGCGAG
GAAAATTCTGGCGAGAGGTGGGAAGAAGAACAAGCGTCGCGAGGAAGAGA
TGGAGAGTGAAAAAGAAGACGATGAAGAGGAAGACGACGGGCACAGCGTC
CGACCGGCGGCAGGTGGCCGCGAACGGAAGTCATGCGCTACGCGTGAACC
TGATGAAAAATACGAAAAAAACAGGTGAAGTGAAATTGATAACACACGTC
CATGAGAAAACGATCTAGCCAGCAACAACCCATCACCGTGAAATAGCTAG
AGCTACTATACACACGTTTTGCGGTTGGTAATAATGCGAGTCAAATGATT
ATTTTGCGACTGTTGCTCAAGAACAGTTATGCCGACCCTACGTTGCTGGC
AAATTCTCTAAAAAAGTGGGGACATGAGATTTTTTGCCTCGTTTGTATCA
GGAATTGTTTGAAACGAGGTACCGCTGCACTCAATGTGGTCTCAAGCACC
GGAGCTTGTCCAAATTCATCAACCCCGTCCCCGGGAATCTTTCGTTAGCT
GAATTCGCCATGCGTCTGTGTCAAGTGCAGTGAGTCCAGCAACGACGAGA
AAAGTGTTGAAGGGCATAAGAAACGCAAGACGAGCACGCCAGGCCTGCTA
ACCCCCGAGGCTTCGAGCGGAGCCATGGCTAAGAGCAGGTACGGAGGAGA
ATGTAATTGTAGGCAGGTGGAGACGGTTATCTGAATATTATCTTGTACTG
CGCGTTGTACAATTCTGTACCACTCTGCTAAGGGAACTAACTGTACACAC
TGCACTGTACTGATCATGTTAATGTTCGTTGTATGTCCCACGGTATGTCG
TCCACTTGATGCATCCTCTCGACTAGTATCGCGTTACGATCTTAACCGCG
CCTTTCCACCGTGTCTGCGTCATCTAATGCTTGTTACCCGATTGAACTAT
GCAGATGCAGGGCACTCAACACCAAGATTCACGATGGAAGTCTCCTGGTC
CGAGGGTCTGACCTTCACGACGATCCAGCCCCCCTAAACGTGACTCGAGC
GCCGAAGCTCGCCATCGTGGCGATAGACGCTGAAAGTCAAATGTTGACGA
TTTCAAAAGACGATAACTGCGCACTACGGCGGGTGATCCAG
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Coding sequence (CDS) from alignment at F-distichus_contig9933:851..1991+

>mRNA_F-distichus_contig9933.19375.1 ID=mRNA_F-distichus_contig9933.19375.1|Name=mRNA_F-distichus_contig9933.19375.1|organism=Fucus distichus monoicous|type=CDS|length=1038bp|location=Sequence derived from alignment at F-distichus_contig9933:851..1991+ (Fucus distichus monoicous)
ATGAGAAACTGGACGGCGAAGTTAGAGTCTGCCAAGGCTGTGATCGCGAG
GAAAATTCTGGCGAGAGGTGGGAAGAAGAACAAGCGTCGCGAGGAAGAGA
TGGAGAGTGAAAAAGAAGACGATGAAGAGGAAGACGACGGGCACAGCGTC
CGACCGGCGGCAGGTGGCCGCGAACGGAAGTCATGCGCTACGCGTGAACC
TGATGAAAAATACGAAAAAAACAGATGAGAAACTGGACGGCGAAGTTAGA
GTCTGCCAAGGCTGTGATCGCGAGGAAAATTCTGGCGAGAGGTGGGAAGA
AGAACAAGCGTCGCGAGGAAGAGATGGAGAGTGAAAAAGAAGACGATGAA
GAGGAAGACGACGGGCACAGCGTCCGACCGGCGGCAGGTGGCCGCGAACG
GAAGTCATGCGCTACGCGTGAACCTGATGAAAAATACGAAAAAAACAGTG
AGTCCAGCAACGACGAGAAAAGTGTTGAAGGGCATAAGAAACGCAAGACG
AGCACGCCAGGCCTGCTAACCCCCGAGGCTTCGAGCGGAGCCATGGCTAA
GAGCAGTGAGTCCAGCAACGACGAGAAAAGTGTTGAAGGGCATAAGAAAC
GCAAGACGAGCACGCCAGGCCTGCTAACCCCCGAGGCTTCGAGCGGAGCC
ATGGCTAAGAGCAGATGCAGGGCACTCAACACCAAGATTCACGATGGAAG
TCTCCTGGTCCGAGGGTCTGACCTTCACGACGATCCAGCCCCCCTAAACG
TGACTCGAGCGCCGAAGCTCGCCATCGTGGCGATAGACGCTGAAAGTCAA
ATGTTGACGATTTCAAAAGACGATAACTGCGCACTACGGCGGGTGATCCA
GATGCAGGGCACTCAACACCAAGATTCACGATGGAAGTCTCCTGGTCCGA
GGGTCTGACCTTCACGACGATCCAGCCCCCCTAAACGTGACTCGAGCGCC
GAAGCTCGCCATCGTGGCGATAGACGCTGAAAGTCAAATGTTGACGATTT
CAAAAGACGATAACTGCGCACTACGGCGGGTGATCCAG
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