mRNA_F-distichus_contig99296.19371.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig99296.19371.1
Unique NamemRNA_F-distichus_contig99296.19371.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
[Close]
BLAST of mRNA_F-distichus_contig99296.19371.1 vs. uniprot
Match: D8LE03_ECTSI (PUA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE03_ECTSI)

HSP 1 Score: 161 bits (408), Expect = 9.800e-49
Identity = 80/94 (85.11%), Postives = 86/94 (91.49%), Query Frame = 1 
Query:   10 PNMMPTMTVDKGAISFVMNGANIMCQGFTSKGGRIDCSLEAGSPVCIMAEGKKVALAVGITTMSTDEIRGVNKGSGVENLHFLGDGLFGTKELD 291
            PNMMPTM VDKGAISFVMNGANIMCQGFTSKGGRID  LEAG+ VCI+AEGKKVALAVG TTMST +I+ VNKG GV+NLH+LGDGLFGTKELD
Sbjct:   88 PNMMPTMRVDKGAISFVMNGANIMCQGFTSKGGRIDTPLEAGAAVCILAEGKKVALAVGQTTMSTADIQSVNKGIGVDNLHYLGDGLFGTKELD 181
[Close]
BLAST of mRNA_F-distichus_contig99296.19371.1 vs. uniprot
Match: A0A835Z9W5_9STRA (PUA-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9W5_9STRA)

HSP 1 Score: 136 bits (343), Expect = 7.440e-39
Identity = 64/94 (68.09%), Postives = 78/94 (82.98%), Query Frame = 1 
Query:   10 PNMMPTMTVDKGAISFVMNGANIMCQGFTSKGGRIDCSLEAGSPVCIMAEGKKVALAVGITTMSTDEIRGVNKGSGVENLHFLGDGLFGTKELD 291
            PN MP M VDKGAI F++NG+NIMC GFTS GGR++ S+EAG  VCIMAEGK+ ALA+G+T MSTDEIR  NKG GV+N+H+LGDGL+G  +LD
Sbjct:   89 PNFMPKMQVDKGAIKFILNGSNIMCPGFTSAGGRMEESIEAGQAVCIMAEGKQHALAIGLTVMSTDEIREQNKGIGVDNMHYLGDGLWGVPDLD 182
[Close]
BLAST of mRNA_F-distichus_contig99296.19371.1 vs. uniprot
Match: A0A5A7U9P4_CUCME (Malignant T-cell-amplified sequence 1-like protein n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7U9P4_CUCME)

HSP 1 Score: 115 bits (289), Expect = 1.100e-31
Identity = 57/97 (58.76%), Postives = 72/97 (74.23%), Query Frame = 1 
Query:    1 VSDPNMMPTMTVDKGAISFVMNGANIMCQGFTSKGGRIDCSLEAGSPVCIMAEGKKVALAVGITTMSTDEIRGVNKGSGVENLHFLGDGLFGTKELD 291
            +SDPN+M  + VD+GAI FV+ GANIMC G TS GG +D  +EA +PV IMAEGK+ ALA+G T MS  EIR  NKG GV+N+H+L DGL+  + LD
Sbjct:    5 LSDPNIMRKLQVDRGAIKFVLAGANIMCPGLTSPGGVLDDEVEAETPVAIMAEGKQHALAIGFTKMSAKEIRATNKGIGVDNMHYLNDGLWKMERLD 101
[Close]
BLAST of mRNA_F-distichus_contig99296.19371.1 vs. uniprot
Match: A0A2P2JYN7_RHIMU (Pseudouridine synthase and archaeosine transglycosylase domain-containing family protein n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2JYN7_RHIMU)

HSP 1 Score: 115 bits (289), Expect = 1.280e-31
Identity = 55/91 (60.44%), Postives = 72/91 (79.12%), Query Frame = 1 
Query:    1 VSDPNMMPTMTVDKGAISFVMNGANIMCQGFTSKGGRIDCSLEAGSPVCIMAEGKKVALAVGITTMSTDEIRGVNKGSGVENLHFLGDGLF 273
            V+DPN+M  + VD+GAI FV++GANIMC G TS GG +D  +EA SPV IMAEGK+ ALA+G+T MS  +IR +NKG GV+N+H+L DGL+
Sbjct:   10 VTDPNIMKKLQVDRGAIKFVLSGANIMCPGLTSPGGALDDEVEAESPVAIMAEGKQHALAIGLTKMSAKDIRTINKGIGVDNMHYLNDGLW 100
[Close]
BLAST of mRNA_F-distichus_contig99296.19371.1 vs. uniprot
Match: A0A7S2Y120_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y120_9STRA)

HSP 1 Score: 114 bits (285), Expect = 4.370e-30
Identity = 59/94 (62.77%), Postives = 69/94 (73.40%), Query Frame = 1 
Query:   10 PNMMPTMTVDKGAISFVMNGANIMCQGFTSKGGRIDCSLEAGSPVCIMAEGKKVALAVGITTMSTDEIRGVNKGSGVENLHFLGDGLFGTKELD 291
            P   PTM VD GAI FVM GANIMC GFTSKGG I    EAG+ V IMAE KK ALAVGIT +ST+EIR   +G GV+N+H+L DGL+ T+ +D
Sbjct:   88 PGCWPTMQVDLGAIPFVMGGANIMCPGFTSKGGNIPQDYEAGTAVIIMAENKKQALAVGITKLSTEEIRKQKRGIGVDNVHYLNDGLWLTQTID 181
[Close]
BLAST of mRNA_F-distichus_contig99296.19371.1 vs. uniprot
Match: A0A6P4B5Q0_ARADU (malignant T-cell-amplified sequence 1 isoform X2 n=1 Tax=Arachis duranensis TaxID=130453 RepID=A0A6P4B5Q0_ARADU)

HSP 1 Score: 113 bits (283), Expect = 5.510e-30
Identity = 54/94 (57.45%), Postives = 71/94 (75.53%), Query Frame = 1 
Query:   10 PNMMPTMTVDKGAISFVMNGANIMCQGFTSKGGRIDCSLEAGSPVCIMAEGKKVALAVGITTMSTDEIRGVNKGSGVENLHFLGDGLFGTKELD 291
            PN+M  + VD+GAI FV++GANIMC G TS GG +D  +EA SPV +MAEGK+ ALA+G T MS  +I+ +NKG GV+NLH+L DGL+  + LD
Sbjct:   71 PNIMKKLQVDRGAIRFVLSGANIMCPGLTSPGGALDEEVEAESPVAVMAEGKQHALAIGFTKMSAKDIKAINKGIGVDNLHYLNDGLWKMERLD 164
[Close]
BLAST of mRNA_F-distichus_contig99296.19371.1 vs. uniprot
Match: K3WJI9_GLOUD (PUA domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WJI9_GLOUD)

HSP 1 Score: 112 bits (281), Expect = 1.800e-29
Identity = 54/94 (57.45%), Postives = 71/94 (75.53%), Query Frame = 1 
Query:   10 PNMMPTMTVDKGAISFVMNGANIMCQGFTSKGGRIDCSLEAGSPVCIMAEGKKVALAVGITTMSTDEIRGVNKGSGVENLHFLGDGLFGTKELD 291
            P++M  +  DKGAI FV++GAN+MC G TS GG +   LEAG+PV IMAEGK+ A+A+GI T+ST+EIR  NKG G+E +HFLGD L+G   +D
Sbjct:   89 PHIMKQVRADKGAIPFVLSGANVMCPGLTSAGGELPEELEAGTPVAIMAEGKEHAMAIGILTLSTEEIRKQNKGIGIEMVHFLGDDLWGLAHID 182
[Close]
BLAST of mRNA_F-distichus_contig99296.19371.1 vs. uniprot
Match: A0A835Q9G1_VANPL (PUA domain-containing protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835Q9G1_VANPL)

HSP 1 Score: 109 bits (273), Expect = 3.190e-29
Identity = 52/95 (54.74%), Postives = 71/95 (74.74%), Query Frame = 1 
Query:    7 DPNMMPTMTVDKGAISFVMNGANIMCQGFTSKGGRIDCSLEAGSPVCIMAEGKKVALAVGITTMSTDEIRGVNKGSGVENLHFLGDGLFGTKELD 291
            DPN+M  + VD+GAI FV++GANIMC G TS GG +D  ++  +PV IMAEGK+ ALA+G T MS  +IR +NKG GV+N+H+L DGL+  + L+
Sbjct:    9 DPNIMKKLQVDRGAIKFVLSGANIMCPGLTSPGGVLDDDVQEETPVAIMAEGKQHALAIGFTKMSAKDIRVINKGIGVDNMHYLNDGLWKIERLE 103
[Close]
BLAST of mRNA_F-distichus_contig99296.19371.1 vs. uniprot
Match: A0A0A0LYF6_CUCSA (PUA domain-containing protein n=23 Tax=Pentapetalae TaxID=1437201 RepID=A0A0A0LYF6_CUCSA)

HSP 1 Score: 112 bits (279), Expect = 3.520e-29
Identity = 55/94 (58.51%), Postives = 69/94 (73.40%), Query Frame = 1 
Query:   10 PNMMPTMTVDKGAISFVMNGANIMCQGFTSKGGRIDCSLEAGSPVCIMAEGKKVALAVGITTMSTDEIRGVNKGSGVENLHFLGDGLFGTKELD 291
            PN+M  + VD+GAI FV+ GANIMC G TS GG +D  +EA +PV IMAEGK+ ALA+G T MS  EIR  NKG GV+N+H+L DGL+  + LD
Sbjct:   88 PNIMKKLQVDRGAIKFVLAGANIMCPGLTSPGGVLDDEVEAETPVAIMAEGKQHALAIGFTKMSAKEIRATNKGIGVDNMHYLNDGLWKMERLD 181
[Close]
BLAST of mRNA_F-distichus_contig99296.19371.1 vs. uniprot
Match: A0A5A7QL80_STRAF (Malignant T-cell-amplified sequence 1 n=4 Tax=Pentapetalae TaxID=1437201 RepID=A0A5A7QL80_STRAF)

HSP 1 Score: 112 bits (280), Expect = 3.880e-29
Identity = 54/94 (57.45%), Postives = 71/94 (75.53%), Query Frame = 1 
Query:    7 DPNMMPTMTVDKGAISFVMNGANIMCQGFTSKGGRIDCSLEAGSPVCIMAEGKKVALAVGITTMSTDEIRGVNKGSGVENLHFLGDGLFGTKEL 288
            DPN+M  + VD+GAI FV++GANIMC G TS GG +D  +EA +PV IMAEGK+ ALA+G T MS  +IR +NKG GV+N+H+L DGL+  + L
Sbjct:  104 DPNIMKMLQVDRGAIKFVLSGANIMCPGLTSPGGALDDEVEAETPVAIMAEGKQHALAIGFTKMSAKDIRTLNKGIGVDNMHYLNDGLWKMERL 197
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig99296.19371.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE03_ECTSI9.800e-4985.11PUA domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835Z9W5_9STRA7.440e-3968.09PUA-like domain-containing protein n=1 Tax=Tribone... [more]
A0A5A7U9P4_CUCME1.100e-3158.76Malignant T-cell-amplified sequence 1-like protein... [more]
A0A2P2JYN7_RHIMU1.280e-3160.44Pseudouridine synthase and archaeosine transglycos... [more]
A0A7S2Y120_9STRA4.370e-3062.77Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6P4B5Q0_ARADU5.510e-3057.45malignant T-cell-amplified sequence 1 isoform X2 n... [more]
K3WJI9_GLOUD1.800e-2957.45PUA domain-containing protein n=1 Tax=Globisporang... [more]
A0A835Q9G1_VANPL3.190e-2954.74PUA domain-containing protein n=1 Tax=Vanilla plan... [more]
A0A0A0LYF6_CUCSA3.520e-2958.51PUA domain-containing protein n=23 Tax=Pentapetala... [more]
A0A5A7QL80_STRAF3.880e-2957.45Malignant T-cell-amplified sequence 1 n=4 Tax=Pent... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig99296contigF-distichus_contig99296:602..1745 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.9
Seed ortholog evalue2.3e-36
Seed eggNOG ortholog2880.D8LE03
Preferred nameMCTS1
KEGG koko:K02883,ko:K07575
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0001731,GO:0002181,GO:0002183,GO:0002188,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008284,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0015935,GO:0016020,GO:0016032,GO:0016043,GO:0019080,GO:0019081,GO:0019222,GO:0019538,GO:0022411,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032790,GO:0032984,GO:0032988,GO:0032991,GO:0034248,GO:0034250,GO:0034622,GO:0034641,GO:0034645,GO:0042127,GO:0042254,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045727,GO:0045948,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051704,GO:0060255,GO:0065003,GO:0065007,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0075522,GO:0080090,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903008,GO:1990904,GO:2000112
EggNOG free text desc.formation of translation preinitiation complex
EggNOG OGsCOG2016@1,KOG2523@2759
Ec32 ortholog descriptionPUA domain
Ec32 orthologEc-05_004570.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons3
Model size294
Cds size279
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig99296.19371.1prot_F-distichus_contig99296.19371.1Fucus distichus monoicouspolypeptideF-distichus_contig99296 602..1730 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931174.6697958-CDS-F-distichus_contig99296:601..6831622931174.6697958-CDS-F-distichus_contig99296:601..683Fucus distichus monoicousCDSF-distichus_contig99296 602..683 -
1690886190.6417677-CDS-F-distichus_contig99296:601..6831690886190.6417677-CDS-F-distichus_contig99296:601..683Fucus distichus monoicousCDSF-distichus_contig99296 602..683 -
1622931174.6838946-CDS-F-distichus_contig99296:895..9631622931174.6838946-CDS-F-distichus_contig99296:895..963Fucus distichus monoicousCDSF-distichus_contig99296 896..963 -
1690886190.6792727-CDS-F-distichus_contig99296:895..9631690886190.6792727-CDS-F-distichus_contig99296:895..963Fucus distichus monoicousCDSF-distichus_contig99296 896..963 -
1622931174.695934-CDS-F-distichus_contig99296:1601..17301622931174.695934-CDS-F-distichus_contig99296:1601..1730Fucus distichus monoicousCDSF-distichus_contig99296 1602..1730 -
1690886190.6996906-CDS-F-distichus_contig99296:1601..17301690886190.6996906-CDS-F-distichus_contig99296:1601..1730Fucus distichus monoicousCDSF-distichus_contig99296 1602..1730 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931174.711705-UTR-F-distichus_contig99296:1730..17451622931174.711705-UTR-F-distichus_contig99296:1730..1745Fucus distichus monoicousUTRF-distichus_contig99296 1731..1745 -
1690886190.7141361-UTR-F-distichus_contig99296:1730..17451690886190.7141361-UTR-F-distichus_contig99296:1730..1745Fucus distichus monoicousUTRF-distichus_contig99296 1731..1745 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig99296.19371.1

>prot_F-distichus_contig99296.19371.1 ID=prot_F-distichus_contig99296.19371.1|Name=mRNA_F-distichus_contig99296.19371.1|organism=Fucus distichus monoicous|type=polypeptide|length=93bp
MMPTMTVDKGAISFVMNGANIMCQGFTSKGGRIDCSLEAGSPVCIMAEGK
KVALAVGITTMSTDEIRGVNKGSGVENLHFLGDGLFGTKELD*
back to top

mRNA from alignment at F-distichus_contig99296:602..1745-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig99296.19371.1 ID=mRNA_F-distichus_contig99296.19371.1|Name=mRNA_F-distichus_contig99296.19371.1|organism=Fucus distichus monoicous|type=mRNA|length=1144bp|location=Sequence derived from alignment at F-distichus_contig99296:602..1745- (Fucus distichus monoicous)
GTTTCAGATCCCAACATGATGCCGACGATGACTGTCGACAAGGGAGCGAT
CAGCTTCGTCATGAACGGGGCCAATATCATGTGCCAGGGTTTCACTTCCA
AGGGAGGCAGAATAGACTGCTCTCTGGAAGCGGGCAGCCCTGTAGTGAGT
GGGGTCGGTCCAAAACCTCTGTAAAGTCTAGAGCTGTATCCCTTCGAAAA
GGAAGCTAAAACCAATGATTTTGAACTCGTGTCGGAGCTTTCTTAAGCGC
GGAATGGTTGTGCGGTATGTGGGGGGTCGGTAACCTAGCGTGTTGATTGG
TTCCCCCCGGCAGGGCACAACTGCTAACAGTAAAAAAAAAACCGTGTAAC
ACGTTACGAGCCCCGCATCATCACAAGCGTCGAGCGAATTCCGCTCTATT
TAGAGGAGATTTTGTCCTCCTGAAGCGTGATAACGTGGCCATTTGATTAA
AAATAGTTTCAGCATCTTCTCGTAAAGTTTTCATTTTGGAGTCCATGTTC
GGTGGGCGCGAGGTTGCACCGCTCTCTCTCCCCCCTTGAATATTTCATGT
TATATCCAATACATTAGTAGAGTGCGGCCATTGCACAAGCAAGACAAGAT
TCGTGTTGATCGTCTGGGCCAGCCAACACGCGCGCTCAAATATATTTTTT
CGCGTCTCGTTTCGTATCATGTGGCTCTATAATAGCGCTCTATATAACCC
TACACTTCGATGACCACGAGGATTCCAAATTTTCCAATCTCCCCACGAAC
GACACTTTCCTTCGTGTTCTGCCACAACACAGTGCATCATGGCCGAGGGA
AAGAAGGTTGCTCTGGCGGTAGGAATCACCACCATGTCGACCGACGAGAT
GTGAGTCAGGCCTGTTGCGGGGCGGGGCGTCCGTTTGTGTTGAAGAGCGA
GTACGTTGCCGTGCAGCAGCTATCATAGCAGTGGTGGCAACGAGCAGCCC
GCGGGCCTCGATTCATCTCCGCACGAACAAACAAACCCGCCGGACCTCGC
GACAGAACCAACCTTTAATCACGCCTCTTTCTGCTCGAAACCCTCGCTAT
GTGCTGCGGCAGCCGAGGAGTTAACAAAGGCAGCGGAGTGGAGAATCTGC
ACTTCCTGGGGGATGGGCTGTTCGGCACGAAGGAACTGGACTGA
back to top

Coding sequence (CDS) from alignment at F-distichus_contig99296:602..1745-

>mRNA_F-distichus_contig99296.19371.1 ID=mRNA_F-distichus_contig99296.19371.1|Name=mRNA_F-distichus_contig99296.19371.1|organism=Fucus distichus monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at F-distichus_contig99296:602..1745- (Fucus distichus monoicous)
ATGATGCCGACGATGACTGTCGACAAGGGAGCGATCAGCTTCGTCATGAA
CGGGGCCAATATCATGTGCCAGGGTTTCACTTCCAAGGGAGGCAGAATAG
ACTGCTCTCTGGAAGCGGGCAGCCCTGTAATGATGCCGACGATGACTGTC
GACAAGGGAGCGATCAGCTTCGTCATGAACGGGGCCAATATCATGTGCCA
GGGTTTCACTTCCAAGGGAGGCAGAATAGACTGCTCTCTGGAAGCGGGCA
GCCCTGTATGCATCATGGCCGAGGGAAAGAAGGTTGCTCTGGCGGTAGGA
ATCACCACCATGTCGACCGACGAGATTGCATCATGGCCGAGGGAAAGAAG
GTTGCTCTGGCGGTAGGAATCACCACCATGTCGACCGACGAGATCCGAGG
AGTTAACAAAGGCAGCGGAGTGGAGAATCTGCACTTCCTGGGGGATGGGC
TGTTCGGCACGAAGGAACTGGACTGACCGAGGAGTTAACAAAGGCAGCGG
AGTGGAGAATCTGCACTTCCTGGGGGATGGGCTGTTCGGCACGAAGGAAC
TGGACTGA
back to top