mRNA_F-distichus_contig99231.19367.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig99231.19367.1
Unique NamemRNA_F-distichus_contig99231.19367.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig99231.19367.1 vs. uniprot
Match: D8LS83_ECTSI (Putative hydrolase of the alpha/beta fold superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS83_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 2.410e-21
Identity = 41/65 (63.08%), Postives = 51/65 (78.46%), Query Frame = 1 
Query:    1 QVAHLKDRFRCVTTDLPGFSKDG----ADGVRWGYGLDEVLRRLEKTVEAAGGGQPVDIISHDWG 183
            QVAHLKDR+RCVTTDLPGF  D     AD  + GY +DE++RRLE+T+E AG G+PV +I+HDWG
Sbjct:   77 QVAHLKDRYRCVTTDLPGFGADSDEYDADVEKNGYSIDEIVRRLERTIEKAGNGEPVTLIAHDWG 141
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BLAST of mRNA_F-distichus_contig99231.19367.1 vs. uniprot
Match: D8LS82_ECTSI (AB hydrolase-1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LS82_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 1.020e-20
Identity = 37/61 (60.66%), Postives = 48/61 (78.69%), Query Frame = 1 
Query:    1 QVAHLKDRFRCVTTDLPGFSKDGADGVRWGYGLDEVLRRLEKTVEAAGGGQPVDIISHDWG 183
            QV HLKDRFRCVTTDLPGFS D A   +WGY  +EV++R+E+T E  G GQP+ +++HD+G
Sbjct:   44 QVTHLKDRFRCVTTDLPGFSGDDARVEKWGYSTEEVVKRIERTAERVGNGQPIILVAHDFG 104
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BLAST of mRNA_F-distichus_contig99231.19367.1 vs. uniprot
Match: D8LK39_ECTSI (Short chain dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK39_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 1.980e-20
Identity = 40/67 (59.70%), Postives = 51/67 (76.12%), Query Frame = 1 
Query:    1 QVAHLKDRFRCVTTDLPGFS--KDGADGV----RWGYGLDEVLRRLEKTVEAAGGGQPVDIISHDWG 183
            QVAHLKDR+RCVTTDLPGFS  +DG  G     +WGY  +EV +RLE+T+E  G G+PV +++HDWG
Sbjct:   35 QVAHLKDRYRCVTTDLPGFSGDEDGDGGTASSSKWGYSFEEVAKRLERTIEDVGKGKPVFVVAHDWG 101
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BLAST of mRNA_F-distichus_contig99231.19367.1 vs. uniprot
Match: A0A3S2TQB1_9BURK (Alpha/beta fold hydrolase n=2 Tax=Rubrivivax albus TaxID=2499835 RepID=A0A3S2TQB1_9BURK)

HSP 1 Score: 57.0 bits (136), Expect = 4.000e-8
Identity = 28/61 (45.90%), Postives = 35/61 (57.38%), Query Frame = 1 
Query:    1 QVAHLKDRFRCVTTDLPGFSKDGADGVRWGYGLDEVLRRLEKTVEAAGGGQPVDIISHDWG 183
            QVAH +DRFRCV   LPGF   G    R    L  ++  L   V+AA  G+PV ++ HDWG
Sbjct:   15 QVAHFRDRFRCVRFTLPGFDMHGP---RRPLTLQAMVDHLAAIVDAASPGEPVTLMLHDWG 72
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig99231.19367.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LS83_ECTSI2.410e-2163.08Putative hydrolase of the alpha/beta fold superfam... [more]
D8LS82_ECTSI1.020e-2060.66AB hydrolase-1 domain-containing protein n=2 Tax=E... [more]
D8LK39_ECTSI1.980e-2059.70Short chain dehydrogenase n=1 Tax=Ectocarpus silic... [more]
A0A3S2TQB1_9BURK4.000e-845.90Alpha/beta fold hydrolase n=2 Tax=Rubrivivax albus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig99231contigF-distichus_contig99231:117..305 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.1
Seed ortholog evalue1.2e-17
Seed eggNOG ortholog2880.D8LS83
Preferred nameEPHX4
KEGG rclassRC01447,RC01728,RC01764,RC02528
KEGG koko:K01253,ko:K22368,ko:K22369
KEGG ReactionR07013,R07014,R07027,R07071,R07072,R07082,R09410,R09417,R09443
KEGG Pathwayko00980,ko04976,ko05204,map00980,map04976,map05204
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004301,GO:0005575,GO:0005622,GO:0005623,GO:0006629,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016787,GO:0016801,GO:0016803,GO:0018904,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044255,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0097176,GO:1901360
EggNOG free text desc.10-hydroxy-9-(phosphonooxy)octadecanoate phosphatase activity
EggNOG OGsCOG0596@1,KOG4178@2759
EC3.3.2.10,3.3.2.9
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Exons1
Model size189
Cds size189
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931174.2434192-CDS-F-distichus_contig99231:116..3051622931174.2434192-CDS-F-distichus_contig99231:116..305Fucus distichus monoicousCDSF-distichus_contig99231 117..305 -
1690886190.4347284-CDS-F-distichus_contig99231:116..3051690886190.4347284-CDS-F-distichus_contig99231:116..305Fucus distichus monoicousCDSF-distichus_contig99231 117..305 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig99231.19367.1prot_F-distichus_contig99231.19367.1Fucus distichus monoicouspolypeptideF-distichus_contig99231 117..305 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig99231.19367.1

>prot_F-distichus_contig99231.19367.1 ID=prot_F-distichus_contig99231.19367.1|Name=mRNA_F-distichus_contig99231.19367.1|organism=Fucus distichus monoicous|type=polypeptide|length=63bp
QVAHLKDRFRCVTTDLPGFSKDGADGVRWGYGLDEVLRRLEKTVEAAGGG
QPVDIISHDWGW*
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mRNA from alignment at F-distichus_contig99231:117..305-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig99231.19367.1 ID=mRNA_F-distichus_contig99231.19367.1|Name=mRNA_F-distichus_contig99231.19367.1|organism=Fucus distichus monoicous|type=mRNA|length=189bp|location=Sequence derived from alignment at F-distichus_contig99231:117..305- (Fucus distichus monoicous)
CAGGTGGCTCATTTGAAAGATCGATTTCGTTGCGTCACGACGGATCTGCC
AGGGTTCTCCAAGGACGGCGCGGACGGCGTTAGGTGGGGCTACGGGTTAG
ACGAGGTGTTGAGGAGGCTCGAGAAGACCGTGGAAGCGGCGGGAGGCGGT
CAGCCCGTTGACATTATCAGCCACGACTGGGGTTGGTAA
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Coding sequence (CDS) from alignment at F-distichus_contig99231:117..305-

>mRNA_F-distichus_contig99231.19367.1 ID=mRNA_F-distichus_contig99231.19367.1|Name=mRNA_F-distichus_contig99231.19367.1|organism=Fucus distichus monoicous|type=CDS|length=378bp|location=Sequence derived from alignment at F-distichus_contig99231:117..305- (Fucus distichus monoicous)
CAGGTGGCTCATTTGAAAGATCGATTTCGTTGCGTCACGACGGATCTGCC
AGGGTTCTCCAAGGACGGCGCGGACGGCGTTAGGTGGGGCTACGGGTTAG
ACGAGGTGTTGAGGAGGCTCGAGAAGACCGTGGAAGCGGCGGGAGGCGGT
CAGCCCGTTGACATTATCAGCCACGACTGGGGTTGGTAACAGGTGGCTCA
TTTGAAAGATCGATTTCGTTGCGTCACGACGGATCTGCCAGGGTTCTCCA
AGGACGGCGCGGACGGCGTTAGGTGGGGCTACGGGTTAGACGAGGTGTTG
AGGAGGCTCGAGAAGACCGTGGAAGCGGCGGGAGGCGGTCAGCCCGTTGA
CATTATCAGCCACGACTGGGGTTGGTAA
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