mRNA_F-distichus_contig99227.19365.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig99227.19365.1
Unique NamemRNA_F-distichus_contig99227.19365.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig99227.19365.1 vs. uniprot
Match: A0A6H5JWC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWC0_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 1.340e-43
Identity = 98/302 (32.45%), Postives = 150/302 (49.67%), Query Frame = 1 
Query:    4 PTREVGDLLRTNMNGALPRRSALLGYDGVVLRSGKKAYIGETVMVEFRSDSAACGRQVPCRLVALFWDMTSSALVATVRMFHSVGEVGGNGDEKNHIGHHRMWEETGASAEIDVEPNALLHFCEILTPEEIDAGAHNEPWVHGERIFHGWTFVGVGFATSRRSRSNHSGGSTDVRLQVLPGKPWEKGGCDEDNFVDM*RHGMFHNDARMPYTSIPLSMYIDAFRVYGWSNPTTEGATYMGLPSFSPALQRCRRHLYPITIAESGASIEGEMAFSAGVVAALEKGCFGQALLRSEDGSLATRE 909
            PT++VG++  TNMNG L R S  +G DG+     K +  G  V +      A  G    CRL+ LFWD+ S  +VATVR F S  EV   G+ +   G  R WE+     E+ +E   +L   EI T +E+DA  H+  W  G R      F+G GF      +   +G     + +V    PW K G  ++    + R G   N+  + + S P++ Y DAF  +G  N  + G  Y G P  + A+QR +R  +  T+A +GA  +GE+     ++  L++GC G+ +L  +DG+   +E
Sbjct:  303 PTKQVGNVRETNMNGTLSRTSPFMGIDGI-----KGSVCGRKVFIHDVCICAVGGTPTVCRLLELFWDVESRQVVATVRTFRSAAEVRHVGETETRGGLQRTWEDCTVGGELLLEVADVLGLAEIYTEDEMDADKHDGEWDQGARCDMWGRFLGEGFVVQAGKKRQRAGDDPVQQFEVTHA-PWCKEGTPDNPLFVLRREGFHLNNENLAFFSAPVTFYNDAFNCFGMGNKHSVGGGYFGWPWRTQAVQRLKRQTHVGTLASTGACCQGEIGLQCEILGLLQRGCLGECMLTEDDGTTYLQE 598
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BLAST of mRNA_F-distichus_contig99227.19365.1 vs. uniprot
Match: D7FUZ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUZ8_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 1.280e-20
Identity = 56/145 (38.62%), Postives = 77/145 (53.10%), Query Frame = 1 
Query:    4 PTREVGDLLRTNMNGALPRRSALLGYDGVVLRSGKKAYIGETVMVEFRSDSAACGRQVPCRLVALFWDMTSSALVATVRMFHSVGEVGGNGDEKNHIGHHRMWEETGASAEIDVEPNALLHFCEILTPEEIDAGAHNEPWVHGER 438
            PT++VG++  TNMNG L R S  +G DG+     K +  G  V +      A  G    CRL+ LFWD+ S  +VATVRMF S  EV   G+ +   G  R WE+     E+ +E + +L   EI T +E+DA  H+  W  G R
Sbjct:  101 PTKQVGNVRETNMNGTLSRTSPFMGIDGI-----KGSVCGRKVFIHDVCICAVGGTPTVCRLLELFWDVESRQVVATVRMFRSAAEVRHVGETETRGGLLRTWEDCTVGGELLLEVDDVLGLAEIYTVDEMDADKHDGEWDQGAR 240
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig99227.19365.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JWC0_9PHAE1.340e-4332.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUZ8_ECTSI1.280e-2038.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig99227contigF-distichus_contig99227:769..2090 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size909
Cds size558
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig99227.19365.1prot_F-distichus_contig99227.19365.1Fucus distichus monoicouspolypeptideF-distichus_contig99227 1494..2051 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931174.0327542-UTR-F-distichus_contig99227:768..9811622931174.0327542-UTR-F-distichus_contig99227:768..981Fucus distichus monoicousUTRF-distichus_contig99227 769..981 -
1690886190.3743174-UTR-F-distichus_contig99227:768..9811690886190.3743174-UTR-F-distichus_contig99227:768..981Fucus distichus monoicousUTRF-distichus_contig99227 769..981 -
1622931174.057027-UTR-F-distichus_contig99227:1394..14931622931174.057027-UTR-F-distichus_contig99227:1394..1493Fucus distichus monoicousUTRF-distichus_contig99227 1395..1493 -
1690886190.386046-UTR-F-distichus_contig99227:1394..14931690886190.386046-UTR-F-distichus_contig99227:1394..1493Fucus distichus monoicousUTRF-distichus_contig99227 1395..1493 -
1622931174.0993028-UTR-F-distichus_contig99227:2051..20901622931174.0993028-UTR-F-distichus_contig99227:2051..2090Fucus distichus monoicousUTRF-distichus_contig99227 2052..2090 -
1690886190.4096863-UTR-F-distichus_contig99227:2051..20901690886190.4096863-UTR-F-distichus_contig99227:2051..2090Fucus distichus monoicousUTRF-distichus_contig99227 2052..2090 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931174.0799627-CDS-F-distichus_contig99227:1493..20511622931174.0799627-CDS-F-distichus_contig99227:1493..2051Fucus distichus monoicousCDSF-distichus_contig99227 1494..2051 -
1690886190.3974924-CDS-F-distichus_contig99227:1493..20511690886190.3974924-CDS-F-distichus_contig99227:1493..2051Fucus distichus monoicousCDSF-distichus_contig99227 1494..2051 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig99227.19365.1

>prot_F-distichus_contig99227.19365.1 ID=prot_F-distichus_contig99227.19365.1|Name=mRNA_F-distichus_contig99227.19365.1|organism=Fucus distichus monoicous|type=polypeptide|length=186bp
MNGALPRRSALLGYDGVVLRSGKKAYIGETVMVEFRSDSAACGRQVPCRL
VALFWDMTSSALVATVRMFHSVGEVGGNGDEKNHIGHHRMWEETGASAEI
DVEPNALLHFCEILTPEEIDAGAHNEPWVHGERIFHGWTFVGVGFATSRR
SRSNHSGGSTDVRLQVLPGKPWEKGGCDEDNFVDM*
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mRNA from alignment at F-distichus_contig99227:769..2090-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig99227.19365.1 ID=mRNA_F-distichus_contig99227.19365.1|Name=mRNA_F-distichus_contig99227.19365.1|organism=Fucus distichus monoicous|type=mRNA|length=1322bp|location=Sequence derived from alignment at F-distichus_contig99227:769..2090- (Fucus distichus monoicous)
GGACCGACACGAGAGGTTGGAGACCTACTCCGTACAAACATGAACGGAGC
TCTTCCACGCAGGAGCGCGCTTTTAGGCTACGATGGGGTGGTGCTTCGGT
CTGGCAAAAAGGCGTACATTGGGGAGACCGTCATGGTTGAATTCCGCAGT
GATAGCGCGGCATGTGGGCGCCAGGTGCCCTGTAGATTGGTCGCGCTGTT
TTGGGATATGACGTCTTCCGCGCTGGTGGCAACCGTGCGAATGTTTCATT
CGGTGGGAGAGGTCGGCGGAAATGGCGACGAGAAGAACCATATCGGACAC
CACCGCATGTGGGAGGAGACTGGTGCAAGCGCCGAAATTGACGTAGAACC
CAACGCGCTTCTTCATTTCTGCGAAATTCTCACTCCGGAAGAAATCGATG
CCGGAGCGCACAACGAACCGTGGGTTCACGGCGAAAGAATCTTTCATGGA
TGGACCTTTGTTGGGGTAGGGTTTGCGACGTCTAGACGCTCACGTAGCAA
CCACAGCGGGGGATCAACGGACGTTCGATTGCAGGTTTTGCCAGGAAAAC
CGTGGGAGAAAGGAGGGTGCGATGAGGACAATTTCGTGGACATGTGACGA
CACGGAATGTTTCATAACGACGCCAGGATGCCGTACACGTCTATCCCCCT
CAGCATGTACATCGACGCCTTCCGAGTGTACGGGTGGTCCAACCCGGTAA
GATATGAAGTACGCTATTTGCAGGAAGTATCTCGACTACTTGATTGATGT
ATCATTAAGTCTGTACCGCGGCAACCACACCCCGCGAGTTGGGACCTCAA
CAACCGGGCAAAGTTCGGCAGTCCACTCACTGTGCATATTTATCGCCTAA
TCCACACACGTGCGATTTTCCAATGCGCCGAAGAGTAGCGGTCCAACCGA
GTCATGTGTGCAAAAGGTCTGGATGCAATGTAATCTCGGGACGTTGCGCG
TTTTTCCATACATCCTGTTTCCAGAAACTCAGTGCGGCTACATTAACGAA
TATACGGGAAGAAAAGCAAGCGAAGAAATTTTTACCAGTATACATTGAAC
CTATGCCTAAAGGTTCTCATCACAACAAAACATTTATGCCCTCTGTTGCT
ATGCGCAAGACCACAGAGGGAGCCACGTACATGGGCCTGCCATCATTTTC
TCCGGCCCTCCAGCGATGCCGCAGACACCTTTATCCGATAACAATTGCGG
AATCGGGGGCGTCAATAGAAGGGGAGATGGCGTTCTCTGCTGGCGTGGTT
GCCGCTCTAGAGAAAGGTTGCTTTGGCCAAGCCCTCCTGCGGAGCGAGGA
CGGGTCTCTTGCTACTAGGGAG
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Coding sequence (CDS) from alignment at F-distichus_contig99227:769..2090-

>mRNA_F-distichus_contig99227.19365.1 ID=mRNA_F-distichus_contig99227.19365.1|Name=mRNA_F-distichus_contig99227.19365.1|organism=Fucus distichus monoicous|type=CDS|length=1116bp|location=Sequence derived from alignment at F-distichus_contig99227:769..2090- (Fucus distichus monoicous)
ATGAACGGAGCTCTTCCACGCAGGAGCGCGCTTTTAGGCTACGATGGGGT
GGTGCTTCGGTCTGGCAAAAAGGCGTACATTGGGGAGACCGTCATGGTTG
AATTCCGCAGTGATAGCGCGGCATGTGGGCGCCAGGTGCCCTGTAGATTG
GTCGCGCTGTTTTGGGATATGACGTCTTCCGCGCTGGTGGCAACCGTGCG
AATGTTTCATTCGGTGGGAGAGGTCGGCGGAAATGGCGACGAGAAGAACC
ATATCGGACACCACCGCATGTGGGAGGAGACTGGTGCAAGCGCCGAAATT
GACGTAGAACCCAACGCGCTTCTTCATTTCTGCGAAATTCTCACTCCGGA
AGAAATCGATGCCGGAGCGCACAACGAACCGTGGGTTCACGGCGAAAGAA
TCTTTCATGGATGGACCTTTGTTGGGGTAGGGTTTGCGACGTCTAGACGC
TCACGTAGCAACCACAGCGGGGGATCAACGGACGTTCGATTGCAGGTTTT
GCCAGGAAAACCGTGGGAGAAAGGAGGGTGCGATGAGGACAATTTCGTGG
ACATGTGAATGAACGGAGCTCTTCCACGCAGGAGCGCGCTTTTAGGCTAC
GATGGGGTGGTGCTTCGGTCTGGCAAAAAGGCGTACATTGGGGAGACCGT
CATGGTTGAATTCCGCAGTGATAGCGCGGCATGTGGGCGCCAGGTGCCCT
GTAGATTGGTCGCGCTGTTTTGGGATATGACGTCTTCCGCGCTGGTGGCA
ACCGTGCGAATGTTTCATTCGGTGGGAGAGGTCGGCGGAAATGGCGACGA
GAAGAACCATATCGGACACCACCGCATGTGGGAGGAGACTGGTGCAAGCG
CCGAAATTGACGTAGAACCCAACGCGCTTCTTCATTTCTGCGAAATTCTC
ACTCCGGAAGAAATCGATGCCGGAGCGCACAACGAACCGTGGGTTCACGG
CGAAAGAATCTTTCATGGATGGACCTTTGTTGGGGTAGGGTTTGCGACGT
CTAGACGCTCACGTAGCAACCACAGCGGGGGATCAACGGACGTTCGATTG
CAGGTTTTGCCAGGAAAACCGTGGGAGAAAGGAGGGTGCGATGAGGACAA
TTTCGTGGACATGTGA
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