mRNA_F-distichus_contig9920.19358.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig9920.19358.1
Unique NamemRNA_F-distichus_contig9920.19358.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig9920.19358.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig9920contigF-distichus_contig9920:5744..7049 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1306
Cds size1305
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931173.3537529-CDS-F-distichus_contig9920:5743..70481622931173.3537529-CDS-F-distichus_contig9920:5743..7048Fucus distichus monoicousCDSF-distichus_contig9920 5744..7048 +
1690886190.0445807-CDS-F-distichus_contig9920:5743..70481690886190.0445807-CDS-F-distichus_contig9920:5743..7048Fucus distichus monoicousCDSF-distichus_contig9920 5744..7048 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig9920.19358.1prot_F-distichus_contig9920.19358.1Fucus distichus monoicouspolypeptideF-distichus_contig9920 5744..7048 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig9920.19358.1

>prot_F-distichus_contig9920.19358.1 ID=prot_F-distichus_contig9920.19358.1|Name=mRNA_F-distichus_contig9920.19358.1|organism=Fucus distichus monoicous|type=polypeptide|length=435bp
STRLAGNKRPLPTEEKRAGGSRDCGGDGRRASREIADHDRHDNRRDLKQP
KVSRREDVEITSSHNGRDTTRIAADDALATRQPTSDWQPPAEDNGGGCSA
PFTPPVARAATGAGVDPGGNAVAGVATLSACSSDGSAPSNASSSPALAVA
SPAPRPSRRPADGRAGASSIGEGGNATGGDFRDSLDGGGVEGAPLPEEHP
PLPLSSATSSSSQTQTQPSTREPSPPPAFSTQEASSPLDYYMHSENDQDA
SEVIDHDRKGKHSNEGRQQGEDEGNPSIPPRDGCPVSGVGTGSGCRPSDS
GAVLMARPAGSSGGEEGGDEEEGGYDDDMADSADTLKDIVTAPMLDQRAS
SPPLPEDEIAASANDAAADRLVLRTLIGHDAGEQYTEDHVARFKEEDGAQ
VNGQALNDDAEQQHGEPDGTAFMQKVKMEGCAFLS
back to top

mRNA from alignment at F-distichus_contig9920:5744..7049+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig9920.19358.1 ID=mRNA_F-distichus_contig9920.19358.1|Name=mRNA_F-distichus_contig9920.19358.1|organism=Fucus distichus monoicous|type=mRNA|length=1306bp|location=Sequence derived from alignment at F-distichus_contig9920:5744..7049+ (Fucus distichus monoicous)
TCAACGAGGCTCGCAGGGAATAAAAGACCTCTTCCGACGGAGGAAAAACG
GGCTGGTGGCTCCCGTGATTGCGGTGGAGATGGCAGGAGAGCTTCCAGGG
AGATTGCCGACCACGACCGACACGATAATCGAAGGGATTTAAAACAACCG
AAGGTCAGTCGTAGAGAAGATGTGGAAATAACCAGCAGCCACAACGGACG
GGATACGACGCGAATCGCGGCTGATGACGCACTGGCGACGAGACAACCGA
CCTCCGATTGGCAGCCCCCCGCGGAGGACAATGGTGGCGGGTGTTCGGCG
CCCTTCACACCGCCGGTCGCTCGCGCTGCCACTGGTGCCGGCGTCGATCC
GGGTGGTAACGCCGTCGCTGGCGTCGCGACTTTGAGTGCTTGCTCATCCG
ATGGTTCCGCGCCCAGCAACGCATCTTCGTCTCCAGCGCTTGCCGTGGCT
TCTCCGGCGCCGCGGCCGTCGCGAAGACCAGCTGACGGCCGAGCGGGCGC
ATCGTCCATAGGCGAGGGAGGGAATGCGACGGGTGGAGATTTTCGTGATT
CGCTTGACGGGGGAGGGGTGGAAGGCGCTCCACTGCCGGAAGAACACCCG
CCTTTACCGTTGTCATCCGCCACTTCCTCTTCTTCCCAGACTCAGACACA
GCCTTCAACGAGAGAGCCGTCGCCACCCCCTGCGTTCTCAACGCAAGAGG
CATCGTCGCCGCTTGATTACTACATGCACAGTGAAAACGACCAGGACGCT
AGCGAAGTCATAGACCACGATCGTAAGGGAAAGCACTCGAACGAGGGGAG
ACAACAAGGTGAGGACGAGGGTAACCCCTCGATCCCTCCTCGAGATGGGT
GTCCTGTGTCTGGTGTCGGGACTGGTTCGGGATGTAGGCCCAGCGACTCT
GGTGCTGTGCTGATGGCGCGGCCTGCAGGGTCCAGCGGAGGAGAGGAGGG
CGGAGACGAGGAAGAGGGAGGTTATGACGACGACATGGCCGACAGTGCCG
ACACTTTGAAGGACATAGTCACGGCACCAATGCTTGACCAACGAGCGTCA
TCACCGCCGTTGCCAGAGGACGAGATAGCAGCGTCGGCGAACGACGCAGC
GGCAGATCGCCTTGTCCTTCGAACGTTGATAGGTCATGACGCTGGGGAAC
AGTACACGGAAGATCATGTGGCGCGATTCAAAGAGGAAGATGGGGCACAG
GTAAATGGCCAAGCACTCAACGACGACGCGGAGCAGCAGCACGGGGAACC
GGACGGAACCGCATTTATGCAAAAAGTCAAGATGGAGGGCTGTGCGTTCT
TGAGTT
back to top

Coding sequence (CDS) from alignment at F-distichus_contig9920:5744..7049+

>mRNA_F-distichus_contig9920.19358.1 ID=mRNA_F-distichus_contig9920.19358.1|Name=mRNA_F-distichus_contig9920.19358.1|organism=Fucus distichus monoicous|type=CDS|length=2610bp|location=Sequence derived from alignment at F-distichus_contig9920:5744..7049+ (Fucus distichus monoicous)
TCAACGAGGCTCGCAGGGAATAAAAGACCTCTTCCGACGGAGGAAAAACG
GGCTGGTGGCTCCCGTGATTGCGGTGGAGATGGCAGGAGAGCTTCCAGGG
AGATTGCCGACCACGACCGACACGATAATCGAAGGGATTTAAAACAACCG
AAGGTCAGTCGTAGAGAAGATGTGGAAATAACCAGCAGCCACAACGGACG
GGATACGACGCGAATCGCGGCTGATGACGCACTGGCGACGAGACAACCGA
CCTCCGATTGGCAGCCCCCCGCGGAGGACAATGGTGGCGGGTGTTCGGCG
CCCTTCACACCGCCGGTCGCTCGCGCTGCCACTGGTGCCGGCGTCGATCC
GGGTGGTAACGCCGTCGCTGGCGTCGCGACTTTGAGTGCTTGCTCATCCG
ATGGTTCCGCGCCCAGCAACGCATCTTCGTCTCCAGCGCTTGCCGTGGCT
TCTCCGGCGCCGCGGCCGTCGCGAAGACCAGCTGACGGCCGAGCGGGCGC
ATCGTCCATAGGCGAGGGAGGGAATGCGACGGGTGGAGATTTTCGTGATT
CGCTTGACGGGGGAGGGGTGGAAGGCGCTCCACTGCCGGAAGAACACCCG
CCTTTACCGTTGTCATCCGCCACTTCCTCTTCTTCCCAGACTCAGACACA
GCCTTCAACGAGAGAGCCGTCGCCACCCCCTGCGTTCTCAACGCAAGAGG
CATCGTCGCCGCTTGATTACTACATGCACAGTGAAAACGACCAGGACGCT
AGCGAAGTCATAGACCACGATCGTAAGGGAAAGCACTCGAACGAGGGGAG
ACAACAAGGTGAGGACGAGGGTAACCCCTCGATCCCTCCTCGAGATGGGT
GTCCTGTGTCTGGTGTCGGGACTGGTTCGGGATGTAGGCCCAGCGACTCT
GGTGCTGTGCTGATGGCGCGGCCTGCAGGGTCCAGCGGAGGAGAGGAGGG
CGGAGACGAGGAAGAGGGAGGTTATGACGACGACATGGCCGACAGTGCCG
ACACTTTGAAGGACATAGTCACGGCACCAATGCTTGACCAACGAGCGTCA
TCACCGCCGTTGCCAGAGGACGAGATAGCAGCGTCGGCGAACGACGCAGC
GGCAGATCGCCTTGTCCTTCGAACGTTGATAGGTCATGACGCTGGGGAAC
AGTACACGGAAGATCATGTGGCGCGATTCAAAGAGGAAGATGGGGCACAG
GTAAATGGCCAAGCACTCAACGACGACGCGGAGCAGCAGCACGGGGAACC
GGACGGAACCGCATTTATGCAAAAAGTCAAGATGGAGGGCTGTGCGTTCT
TGAGTTCAACGAGGCTCGCAGGGAATAAAAGACCTCTTCCGACGGAGGAA
AAACGGGCTGGTGGCTCCCGTGATTGCGGTGGAGATGGCAGGAGAGCTTC
CAGGGAGATTGCCGACCACGACCGACACGATAATCGAAGGGATTTAAAAC
AACCGAAGGTCAGTCGTAGAGAAGATGTGGAAATAACCAGCAGCCACAAC
GGACGGGATACGACGCGAATCGCGGCTGATGACGCACTGGCGACGAGACA
ACCGACCTCCGATTGGCAGCCCCCCGCGGAGGACAATGGTGGCGGGTGTT
CGGCGCCCTTCACACCGCCGGTCGCTCGCGCTGCCACTGGTGCCGGCGTC
GATCCGGGTGGTAACGCCGTCGCTGGCGTCGCGACTTTGAGTGCTTGCTC
ATCCGATGGTTCCGCGCCCAGCAACGCATCTTCGTCTCCAGCGCTTGCCG
TGGCTTCTCCGGCGCCGCGGCCGTCGCGAAGACCAGCTGACGGCCGAGCG
GGCGCATCGTCCATAGGCGAGGGAGGGAATGCGACGGGTGGAGATTTTCG
TGATTCGCTTGACGGGGGAGGGGTGGAAGGCGCTCCACTGCCGGAAGAAC
ACCCGCCTTTACCGTTGTCATCCGCCACTTCCTCTTCTTCCCAGACTCAG
ACACAGCCTTCAACGAGAGAGCCGTCGCCACCCCCTGCGTTCTCAACGCA
AGAGGCATCGTCGCCGCTTGATTACTACATGCACAGTGAAAACGACCAGG
ACGCTAGCGAAGTCATAGACCACGATCGTAAGGGAAAGCACTCGAACGAG
GGGAGACAACAAGGTGAGGACGAGGGTAACCCCTCGATCCCTCCTCGAGA
TGGGTGTCCTGTGTCTGGTGTCGGGACTGGTTCGGGATGTAGGCCCAGCG
ACTCTGGTGCTGTGCTGATGGCGCGGCCTGCAGGGTCCAGCGGAGGAGAG
GAGGGCGGAGACGAGGAAGAGGGAGGTTATGACGACGACATGGCCGACAG
TGCCGACACTTTGAAGGACATAGTCACGGCACCAATGCTTGACCAACGAG
CGTCATCACCGCCGTTGCCAGAGGACGAGATAGCAGCGTCGGCGAACGAC
GCAGCGGCAGATCGCCTTGTCCTTCGAACGTTGATAGGTCATGACGCTGG
GGAACAGTACACGGAAGATCATGTGGCGCGATTCAAAGAGGAAGATGGGG
CACAGGTAAATGGCCAAGCACTCAACGACGACGCGGAGCAGCAGCACGGG
GAACCGGACGGAACCGCATTTATGCAAAAAGTCAAGATGGAGGGCTGTGC
GTTCTTGAGT
back to top