mRNA_F-distichus_contig99113.19352.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig99113.19352.1
Unique NamemRNA_F-distichus_contig99113.19352.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig99113.19352.1 vs. uniprot
Match: A0A6H5KQB6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KQB6_9PHAE)

HSP 1 Score: 213 bits (542), Expect = 1.980e-61
Identity = 98/139 (70.50%), Postives = 116/139 (83.45%), Query Frame = 1 
Query:    1 FCTDCTIYVSVFGYKAGSYSIVASQGLTKLREGFPQQGTVGGGKVAGHYYEFFNPPGKSQSIQIEVTALTGDPDVYVTVGGDDSPGPHNFLWMGGNSGSDFVSISPDDIHFCQDCAYQMGVTSVSNSSYTISLYRGDGG 417
            FCTDCTIYV V+GYK G YSIVASQGLT+L+EGFPQQG VGG +    YYEFFNPPG  +SIQ+  TALTGDPD+YVTVGG D PGP+NF WMGG +G+DF++IS  D HFC DCAYQ+G+TS +N+SYT+S+YRGD G
Sbjct:  108 FCTDCTIYVGVYGYKKGGYSIVASQGLTRLQEGFPQQGLVGG-EDDWKYYEFFNPPGHGKSIQVVATALTGDPDIYVTVGGSDLPGPNNFYWMGGATGADFINISASDQHFCDDCAYQIGLTSAANASYTVSVYRGDEG 245
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BLAST of mRNA_F-distichus_contig99113.19352.1 vs. uniprot
Match: A0A7S1C2U3_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C2U3_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 3.690e-20
Identity = 52/139 (37.41%), Postives = 78/139 (56.12%), Query Frame = 1 
Query:    4 CTDCTIYVSVFGYKAGSYSIVASQG--LTKLREGFPQQGTVGGGKVAGHYYEFFNPPGKSQSIQIEVTALTGDPDVYVTV-------GGDDSPGPHNFLWMGGNSGSDFVSISPDDIHFCQDCAYQMGVTSVSNSSYTI 393
            C++C ++++V+GY    +S+  SQG  +T+L++G PQQG VG   +  +YYEF       + + I VT   GDPD++V V       G ++ P  HN+ W G   G D V IS  D++ C  C Y + V    NS+YTI
Sbjct:  867 CSNCNVFIAVYGYTEAEFSVTYSQGTSVTRLQDGVPQQGRVG--HMEYNYYEF-GVDAPDEDVTITVTPNGGDPDLFVRVEDPDDPLGANNRPSTHNYQWAGLRYGDDVVVISHSDVNACYGCNYLIAVYGSYNSTYTI 1002
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BLAST of mRNA_F-distichus_contig99113.19352.1 vs. uniprot
Match: A0A7S1XNZ0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XNZ0_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 3.730e-20
Identity = 48/131 (36.64%), Postives = 74/131 (56.49%), Query Frame = 1 
Query:    1 FCTDCTIYVSVFGYKAGSYSIVASQGLTKLREGFPQQGTVGGGKVAGHYYEFFNPPGKSQSIQIEVTALTGDPDVYVTVGGDDSPGPHNFLWMGGNSGSDFVSISPDDIHFCQDCAYQMGVTSVSNSSYTI 393
            +CTDC   ++V+GY  G ++I AS+GL++L++G P  G V   + A  YY F N       I I +TA+ GDPD+YV       P   +++W   N G D ++I   D  +C DC Y +GV    NS++++
Sbjct: 1517 YCTDCQYSIAVYGYVGGEFTISASEGLSELQDGVPISGRVSDDEYA--YYAFHNND-PDADITISLTAVDGDPDLYVNKNRTSMPTSSSYIWQSFNVGDDAMTILHTDDDYCSDCDYIVGVKGYGNSTFSL 1644
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BLAST of mRNA_F-distichus_contig99113.19352.1 vs. uniprot
Match: A0A482RVW8_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RVW8_9ARCH)

HSP 1 Score: 92.8 bits (229), Expect = 3.140e-19
Identity = 58/143 (40.56%), Postives = 78/143 (54.55%), Query Frame = 1 
Query:    1 FCTDCTIYVSVFGYKAGSYSIVASQ-GLTKLREGFPQQGTVGGGKVAGH---YYEFFNPPGKSQSIQIEVTALTGDPDVYVTVGGD------DSPGPHNFLWMGGNSGSDFVSISPDDIHFCQDCAYQMGVTSVSNSSYTISL 399
            +C +C +Y++VFGY  GSY+I AS  GL  L     Q  T  GG V      YY F+NP  +   I + +TA++GD D+YVT          D P   N+ W   + GSD V I  DD  FC DC Y +GV+  SN++YT+ L
Sbjct:  787 YCVNCVVYLAVFGYTEGSYTIQASSTGLLTL-----QTNTAIGGHVERDIFKYYTFYNP-NRFGDISLTLTAISGDADLYVTTRTSADGNQADLPNRINYKWRSMSYGSDSVRIDYDDDSFCFDCEYVVGVSGFSNATYTLLL 923
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BLAST of mRNA_F-distichus_contig99113.19352.1 vs. uniprot
Match: A0A836CJK6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJK6_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 4.250e-14
Identity = 44/139 (31.65%), Postives = 65/139 (46.76%), Query Frame = 1 
Query:    1 FCTDCTIYVSVFGYKAGSYSIVASQ--GLTKLREGFPQQGTVGGGKVAGHYYEFFNPPGKSQSIQIEVTALTGDPDVYV-------------TVGGDDS---PGPHNFLWMGGNSGSDFVSISPDDIHFCQDCAYQMGV 363
            +CT CT+Y++V G++ G++SI      GLT L+ G P  G +  G     YY   +P G    +++ +T+LTGD ++YV               G D     PG     W     G D +   P D H+C  C Y +GV
Sbjct: 1091 YCTGCTLYIAVKGFRGGAFSITGEVDGGLTLLQAGLPVAGAIVNG--TSRYYVLHSPEGARDIVEVRLTSLTGDSNLYVXXXXXXXXXXXXXNAGFDTELPGPGQERSHWSSEKKGDDAIQALPTDAHYCSGCDYVIGV 1227
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BLAST of mRNA_F-distichus_contig99113.19352.1 vs. uniprot
Match: A0A812X6M6_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812X6M6_9DINO)

HSP 1 Score: 67.0 bits (162), Expect = 3.240e-10
Identity = 42/105 (40.00%), Postives = 54/105 (51.43%), Query Frame = 1 
Query:   13 CTIYVSVFGYKAGSYSIVA---SQGLTKLREGFPQQGTVGGGKVAGHYYEFFNPPGKSQSIQIEVTALTGDPDVYVTVGGDDSPGPHNFLWMGGNSGSDFVSISP 318
            CTIY SV+G++A  YSIVA   ++G   L +G PQQG V  G+ A        P    Q   + VT  +GDPD+YV    D+ P   NF       G + VS SP
Sbjct:   63 CTIYTSVYGFRAAQYSIVAQVGAEGEVLLVDGTPQQGNVAEGEYAYFKALVDFPADALQGYSVTVTPRSGDPDLYVITTRDELPSSQNFDRRSIGFGRETVSFSP 167
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig99113.19352.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KQB6_9PHAE1.980e-6170.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1C2U3_9STRA3.690e-2037.41Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S1XNZ0_9STRA3.730e-2036.64Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A482RVW8_9ARCH3.140e-1940.56Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A836CJK6_9STRA4.250e-1431.65Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A812X6M6_9DINO3.240e-1040.00Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig99113contigF-distichus_contig99113:325..1593 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size417
Cds size417
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig99113.19352.1prot_F-distichus_contig99113.19352.1Fucus distichus monoicouspolypeptideF-distichus_contig99113 325..1593 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931172.6242685-CDS-F-distichus_contig99113:324..5131622931172.6242685-CDS-F-distichus_contig99113:324..513Fucus distichus monoicousCDSF-distichus_contig99113 325..513 +
1690886189.7873619-CDS-F-distichus_contig99113:324..5131690886189.7873619-CDS-F-distichus_contig99113:324..513Fucus distichus monoicousCDSF-distichus_contig99113 325..513 +
1622931172.63976-CDS-F-distichus_contig99113:1002..11051622931172.63976-CDS-F-distichus_contig99113:1002..1105Fucus distichus monoicousCDSF-distichus_contig99113 1003..1105 +
1690886189.8012338-CDS-F-distichus_contig99113:1002..11051690886189.8012338-CDS-F-distichus_contig99113:1002..1105Fucus distichus monoicousCDSF-distichus_contig99113 1003..1105 +
1622931172.6544561-CDS-F-distichus_contig99113:1468..15931622931172.6544561-CDS-F-distichus_contig99113:1468..1593Fucus distichus monoicousCDSF-distichus_contig99113 1469..1593 +
1690886189.8126874-CDS-F-distichus_contig99113:1468..15931690886189.8126874-CDS-F-distichus_contig99113:1468..1593Fucus distichus monoicousCDSF-distichus_contig99113 1469..1593 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig99113.19352.1

>prot_F-distichus_contig99113.19352.1 ID=prot_F-distichus_contig99113.19352.1|Name=mRNA_F-distichus_contig99113.19352.1|organism=Fucus distichus monoicous|type=polypeptide|length=139bp
FCTDCTIYVSVFGYKAGSYSIVASQGLTKLREGFPQQGTVGGGKVAGHYY
EFFNPPGKSQSIQIEVTALTGDPDVYVTVGGDDSPGPHNFLWMGGNSGSD
FVSISPDDIHFCQDCAYQMGVTSVSNSSYTISLYRGDGG
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mRNA from alignment at F-distichus_contig99113:325..1593+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig99113.19352.1 ID=mRNA_F-distichus_contig99113.19352.1|Name=mRNA_F-distichus_contig99113.19352.1|organism=Fucus distichus monoicous|type=mRNA|length=1269bp|location=Sequence derived from alignment at F-distichus_contig99113:325..1593+ (Fucus distichus monoicous)
TTCTGCACGGACTGCACCATATACGTGAGCGTATTCGGGTACAAGGCGGG
ATCCTACTCCATCGTGGCCAGCCAGGGTCTCACGAAGCTTCGCGAAGGCT
TTCCTCAGCAGGGGACAGTGGGGGGAGGAAAAGTAGCTGGACATTACTAC
GAGTTCTTCAACCCACCAGGAAAAAGTCAAAGTATACAGGTGACGCTGTG
GTGGGGGTACTTTTATCCTTGTTCTGGCGTCGAGGGCGAGAGTACCTTAT
TTTGGTAAAAAGTTTCCTTTGAGGGGAGACACCCTCACCGAGGCCCACAG
TATCATTTTTTGTCCGGAGTATGTTTGTGGCGAGAAAAATATCCTCTTTG
AGAACGAGAATACCTTATTTTGTTTAGTACCTTTCGGATCCTCACCCGAG
GCCGAATGTACCTTTTTTCGTGCGTGATGCACGTAAACTTTCACACACTT
GAGTGCCCTCTAATCGTAGCTCGGCATGATACGTTGGCCGGACTAAAATA
TCATATGTCGAACGTTGCAGTGGACAACAAAAATCAGGGATGAGATCCAC
CGCAAGCTTATGGCTAGCGTGTCACTACTCATAAGGTCCACCGCAAGCTG
TGATATCCCACCATGTTAACGACTTGCAATTTTTTATCGGCGATTGCCGG
TGTGTCTGGGCGCTGCATTCTGCGAAAGATCGAGGTCACGGCTCTCACCG
GCGATCCGGACGTGTACGTTACGGTAGGGGGCGACGATTCCCCCGGTCCG
CACAACTTCCTGTGGATGGGGGGGAATTCGGGTGGGTGCCTTGTTTTCGG
CTCCATTTCTGCAATACTGTTTGATATTTACACGTTCCAGGCATTTTTGG
GGGGGGTCTGTAAACATCTCGTAGCACGCCATGAAAGCGCCGATTCAACG
AAGACTCTCGCGTCCTCTTCCCATTTTGGTACAGTGCCTGTTATATACTA
AATATTGGGGGGGGGGTCGGTTCAGACTTCGTTTCCATCAGTCCGGAGGG
CGTGTGTGTAGGGCATTCTGGTGTTTTGATTGGTCCACCTGTGTTTTTGC
TGATTGGAGGGGGAAACAAGTTTTTCACTCTAAGTTTTGGCCCTAATTTC
TGATATTTGGCCCTAACAGCACCTGTTGTGTACTAAATATATAGGTTCGG
ACTTCGTGTCGATCAGTCCGGACGACATACATTTCTGCCAAGACTGCGCC
TACCAGATGGGCGTCACATCCGTCAGTAACTCGTCCTACACCATCTCTCT
CTATCGTGGAGACGGCGGA
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Coding sequence (CDS) from alignment at F-distichus_contig99113:325..1593+

>mRNA_F-distichus_contig99113.19352.1 ID=mRNA_F-distichus_contig99113.19352.1|Name=mRNA_F-distichus_contig99113.19352.1|organism=Fucus distichus monoicous|type=CDS|length=834bp|location=Sequence derived from alignment at F-distichus_contig99113:325..1593+ (Fucus distichus monoicous)
TTCTGCACGGACTGCACCATATACGTGAGCGTATTCGGGTACAAGGCGGG
ATCCTACTCCATCGTGGCCAGCCAGGGTCTCACGAAGCTTCGCGAAGGCT
TTCCTCAGCAGGGGACAGTGGGGGGAGGAAAAGTAGCTGGACATTACTAC
GAGTTCTTCAACCCACCAGGAAAAAGTCAAAGTATACAGTTCTGCACGGA
CTGCACCATATACGTGAGCGTATTCGGGTACAAGGCGGGATCCTACTCCA
TCGTGGCCAGCCAGGGTCTCACGAAGCTTCGCGAAGGCTTTCCTCAGCAG
GGGACAGTGGGGGGAGGAAAAGTAGCTGGACATTACTACGAGTTCTTCAA
CCCACCAGGAAAAAGTCAAAGTATACAGATCGAGGTCACGGCTCTCACCG
GCGATCCGGACGTGTACGTTACGGTAGGGGGCGACGATTCCCCCGGTCCG
CACAACTTCCTGTGGATGGGGGGGAATTCGGATCGAGGTCACGGCTCTCA
CCGGCGATCCGGACGTGTACGTTACGGTAGGGGGCGACGATTCCCCCGGT
CCGCACAACTTCCTGTGGATGGGGGGGAATTCGGGTTCGGACTTCGTGTC
GATCAGTCCGGACGACATACATTTCTGCCAAGACTGCGCCTACCAGATGG
GCGTCACATCCGTCAGTAACTCGTCCTACACCATCTCTCTCTATCGTGGA
GACGGCGGAGTTCGGACTTCGTGTCGATCAGTCCGGACGACATACATTTC
TGCCAAGACTGCGCCTACCAGATGGGCGTCACATCCGTCAGTAACTCGTC
CTACACCATCTCTCTCTATCGTGGAGACGGCGGA
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