mRNA_F-distichus_contig9903.19345.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig9903.19345.1
Unique NamemRNA_F-distichus_contig9903.19345.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
[Close]
BLAST of mRNA_F-distichus_contig9903.19345.1 vs. uniprot
Match: A0A6H5KVF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF9_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 5.140e-21
Identity = 73/158 (46.20%), Postives = 93/158 (58.86%), Query Frame = 1 
Query:    1 ARKRVEHMRRMRAALRIQTAFRRHSARRKYLMLKGAALALQCATR-RSIAVAIHRELK--REHRATKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRMKAKDVGNLKEENIKLKAEILAMRERAAGAAVAAGNEQLSTALQETADLR 465
            AR++VEHMRRMRAALR QTA+RRH AR+ +L +KGAALALQCATR R  A + +R L   R HR  +                                        RMKAKDVGNLK +N +LKAEIL +R+ A+ AA AAG+E+L++A++E   LR
Sbjct:   70 ARRKVEHMRRMRAALRTQTAYRRHFARKNFLSIKGAALALQCATRWRKAAKSWYRMLAPWRAHRKLRSATLALQCRMRQKIAYGELRDL------------------RMKAKDVGNLKVDNERLKAEILVLRQAASNAAAAAGDERLTSAMKEADSLR 209
[Close]
BLAST of mRNA_F-distichus_contig9903.19345.1 vs. uniprot
Match: D8LTS1_ECTSI (Myosin D n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTS1_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 3.260e-9
Identity = 37/59 (62.71%), Postives = 48/59 (81.36%), Query Frame = 1 
Query:  313 RMKAKDVGNLKEENIKLKAEILAMRERAAGAAVAAGNEQLSTALQETADLRSEVEKLTA 489
            R+KAKDVGNLK +N +LKAEIL +RE A+ AA AAG+E+L++A++E   LR EVEKL A
Sbjct:  958 RIKAKDVGNLKGDNERLKAEILVLREAASNAAAAAGDERLTSAMKEADSLREEVEKLKA 1016
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig9903.19345.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KVF9_9PHAE5.140e-2146.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTS1_ECTSI3.260e-962.71Myosin D n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig9903contigF-distichus_contig9903:66..1621 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.8
Seed ortholog evalue5.2e-09
Seed eggNOG ortholog2880.D8LTS1
KEGG koko:K10357
Hectar predicted targeting categorymitochondrion
GOsGO:0000146,GO:0000166,GO:0000278,GO:0000281,GO:0000302,GO:0000910,GO:0001891,GO:0001931,GO:0003674,GO:0003774,GO:0003779,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005826,GO:0005829,GO:0005856,GO:0005886,GO:0005938,GO:0006928,GO:0006935,GO:0006950,GO:0006970,GO:0006971,GO:0006979,GO:0006996,GO:0007010,GO:0007015,GO:0007033,GO:0007049,GO:0007154,GO:0008064,GO:0008092,GO:0008104,GO:0008144,GO:0008150,GO:0008360,GO:0009267,GO:0009581,GO:0009582,GO:0009605,GO:0009612,GO:0009628,GO:0009636,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010243,GO:0010639,GO:0014070,GO:0014074,GO:0015629,GO:0016020,GO:0016043,GO:0016050,GO:0016459,GO:0016460,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022402,GO:0022603,GO:0022604,GO:0022607,GO:0030029,GO:0030030,GO:0030031,GO:0030036,GO:0030038,GO:0030048,GO:0030139,GO:0030554,GO:0030587,GO:0030832,GO:0030833,GO:0030837,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0030898,GO:0031033,GO:0031034,GO:0031152,GO:0031154,GO:0031254,GO:0031268,GO:0031270,GO:0031333,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0032009,GO:0032060,GO:0032153,GO:0032155,GO:0032271,GO:0032272,GO:0032502,GO:0032535,GO:0032553,GO:0032555,GO:0032559,GO:0032796,GO:0032956,GO:0032970,GO:0032982,GO:0032991,GO:0033036,GO:0033043,GO:0033275,GO:0033298,GO:0033554,GO:0034461,GO:0034622,GO:0035639,GO:0036094,GO:0040011,GO:0042221,GO:0042330,GO:0042493,GO:0042542,GO:0042594,GO:0042623,GO:0042641,GO:0042802,GO:0042803,GO:0042995,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044459,GO:0044464,GO:0044764,GO:0044877,GO:0045177,GO:0045179,GO:0045335,GO:0046677,GO:0046683,GO:0046847,GO:0046983,GO:0048519,GO:0048523,GO:0048856,GO:0048870,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0050982,GO:0051015,GO:0051017,GO:0051128,GO:0051129,GO:0051179,GO:0051301,GO:0051493,GO:0051494,GO:0051591,GO:0051606,GO:0051674,GO:0051703,GO:0051704,GO:0051716,GO:0060327,GO:0060328,GO:0061572,GO:0061640,GO:0065003,GO:0065007,GO:0065008,GO:0070252,GO:0070938,GO:0071496,GO:0071840,GO:0071889,GO:0071944,GO:0090066,GO:0090702,GO:0097159,GO:0097204,GO:0097367,GO:0097435,GO:0097708,GO:0098630,GO:0098743,GO:0099120,GO:0099568,GO:0099738,GO:0110053,GO:0120025,GO:0120031,GO:0120036,GO:1901265,GO:1901363,GO:1901698,GO:1901700,GO:1902903,GO:1902904,GO:1903047,GO:1990753
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG0160@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019,ko03029,ko04131,ko04812
Exons2
Model size490
Cds size468
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig9903.19345.1prot_F-distichus_contig9903.19345.1Fucus distichus monoicouspolypeptideF-distichus_contig9903 87..1621 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931171.883024-UTR-F-distichus_contig9903:65..861622931171.883024-UTR-F-distichus_contig9903:65..86Fucus distichus monoicousUTRF-distichus_contig9903 66..86 +
1690886189.4756587-UTR-F-distichus_contig9903:65..861690886189.4756587-UTR-F-distichus_contig9903:65..86Fucus distichus monoicousUTRF-distichus_contig9903 66..86 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931171.90097-CDS-F-distichus_contig9903:86..4941622931171.90097-CDS-F-distichus_contig9903:86..494Fucus distichus monoicousCDSF-distichus_contig9903 87..494 +
1690886189.4913173-CDS-F-distichus_contig9903:86..4941690886189.4913173-CDS-F-distichus_contig9903:86..494Fucus distichus monoicousCDSF-distichus_contig9903 87..494 +
1622931171.9209502-CDS-F-distichus_contig9903:1561..16211622931171.9209502-CDS-F-distichus_contig9903:1561..1621Fucus distichus monoicousCDSF-distichus_contig9903 1562..1621 +
1690886189.5007095-CDS-F-distichus_contig9903:1561..16211690886189.5007095-CDS-F-distichus_contig9903:1561..1621Fucus distichus monoicousCDSF-distichus_contig9903 1562..1621 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig9903.19345.1

>prot_F-distichus_contig9903.19345.1 ID=prot_F-distichus_contig9903.19345.1|Name=mRNA_F-distichus_contig9903.19345.1|organism=Fucus distichus monoicous|type=polypeptide|length=156bp
MRRMRAALRIQTAFRRHSARRKYLMLKGAALALQCATRRSIAVAIHRELK
REHRATKLQSWQRMLGPWKAYRKLKSASIALQCRMRQRIAYAELRELRMK
AKDVGNLKEENIKLKAEILAMRERAAGAAVAAGNEQLSTALQETADLRSE
VEKLTA
back to top

mRNA from alignment at F-distichus_contig9903:66..1621+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig9903.19345.1 ID=mRNA_F-distichus_contig9903.19345.1|Name=mRNA_F-distichus_contig9903.19345.1|organism=Fucus distichus monoicous|type=mRNA|length=1556bp|location=Sequence derived from alignment at F-distichus_contig9903:66..1621+ (Fucus distichus monoicous)
GCCCGGAAGCGGGTGGAGCATATGCGAAGGATGCGAGCCGCCCTACGAAT
ACAGACCGCTTTCCGACGCCACTCGGCTCGAAGGAAGTATCTGATGCTGA
AGGGTGCGGCGCTGGCGCTCCAGTGCGCCACTCGACGGAGCATCGCGGTC
GCGATTCATCGGGAACTAAAGCGCGAGCATCGGGCGACAAAGCTCCAGAG
CTGGCAGAGGATGCTGGGGCCATGGAAGGCATATCGGAAGCTTAAGTCTG
CCAGCATCGCTCTCCAGTGCCGTATGCGCCAGAGGATCGCGTACGCGGAG
CTGAGAGAGCTCCGGATGAAGGCGAAGGATGTTGGCAACCTCAAGGAGGA
GAATATCAAGCTGAAGGCGGAGATCCTGGCGATGAGGGAGAGGGCGGCTG
GTGCGGCCGTCGCGGCGGGCAATGAGCAGGTGCGTGCGTGTGTGTGTATG
CGTGTATTCATACCGTGTAACGCGGGGGTTGCTTTTCGTGAACACATGTG
TGTCTTTCTATGTCTCTGTGTGTGCGTTTTGGTTGAATTACCTATTACCG
CGCTGTCCGGCGCTTTCGTGCCAATCAGTTCAAGCTGTTTGTCTTTGTAT
GTGGTATATCCCCACATCCCTTACCCTCTATAATGCCAAAAAAAACATCA
TGCATTGGGTCGAAATGGTTGTTAAAAAGACTTCGTGTACGAGGGAGATC
GATTTTTTTAGAAGTTGGCAATAAGAACGAATCAAACCGGGAGTAAAGTG
GGGTTGCAGGTGAGGTTTCGTGTAAAGACCTGAGCGCTTACGTTACGATC
GTTAAATGAAATTTTGTCTTTTTTTGTTTGTTGCGCCTGTGGAGTTTTTA
TAACATGGAAGCGTTTCATTGAGCAAAAAAGGAAAATTTGTTTTCTCAAA
TCAAGCTTTTCCCGTACTCTTGATCATCAGACGAGACAGAAGAGATTGAG
AAATTCTTATTTTGTTTCGTGTTTCTAATCCTGTTTTCAATAAGTATCGC
GTTACTGTGTCGGGGATGCTCTCTCTGCTGCTCCATATATATATATATAT
ATTTCCCTTGAGCTTTTGAGTCGGTACGCATCGGCGATGTATAGTAAAAT
ATTGGGAGATAACGCCCCCCCCACGGGAGGAAAAACAATCCCCCCCTCCC
CACTCTTTCTCATCACAGCGTTTGATAGAAACTGATTCTGTAATCAAGAT
GAAACCAGGGGAGAGGATTTATTATTCCCCGGTGGGGGATAGGGGATGAG
CACCTAGCCGCAACCACCATTTTTGTTGTTTTTGTCTCACCTTGCACCTC
TTGATTTTAACGCACGACTCTTCTGTCTCACAATTTTTTTTTTGGTCTTC
AACCCCCCCCCCTCCTTTTCGGCGTGTGTTTTGTTTTTGCCTGTATTTAT
TTTCTGTATGGTGTGGAATGGTGGGATATGTGATTTCGGAAATCGGGTCC
GGAAAATCGGAATCTCAAAATTGGAATCGAAATATTTTGGATAAAGCTTT
CTACGGCGTTACAAGAGACCGCTGATCTACGGAGCGAGGTGGAAAAATTG
ACCGCT
back to top

Coding sequence (CDS) from alignment at F-distichus_contig9903:66..1621+

>mRNA_F-distichus_contig9903.19345.1 ID=mRNA_F-distichus_contig9903.19345.1|Name=mRNA_F-distichus_contig9903.19345.1|organism=Fucus distichus monoicous|type=CDS|length=936bp|location=Sequence derived from alignment at F-distichus_contig9903:66..1621+ (Fucus distichus monoicous)
ATGCGAAGGATGCGAGCCGCCCTACGAATACAGACCGCTTTCCGACGCCA
CTCGGCTCGAAGGAAGTATCTGATGCTGAAGGGTGCGGCGCTGGCGCTCC
AGTGCGCCACTCGACGGAGCATCGCGGTCGCGATTCATCGGGAACTAAAG
CGCGAGCATCGGGCGACAAAGCTCCAGAGCTGGCAGAGGATGCTGGGGCC
ATGGAAGGCATATCGGAAGCTTAAGTCTGCCAGCATCGCTCTCCAGTGCC
GTATGCGCCAGAGGATCGCGTACGCGGAGCTGAGAGAGCTCCGGATGAAG
GCGAAGGATGTTGGCAACCTCAAGGAGGAGAATATCAAGCTGAAGGCGGA
GATCCTGGCGATGAGGGAGAGGGCGGCTGGTGCGGCCGTCGCGGCGGGCA
ATGAGCAGATGCGAAGGATGCGAGCCGCCCTACGAATACAGACCGCTTTC
CGACGCCACTCGGCTCGAAGGAAGTATCTGATGCTGAAGGGTGCGGCGCT
GGCGCTCCAGTGCGCCACTCGACGGAGCATCGCGGTCGCGATTCATCGGG
AACTAAAGCGCGAGCATCGGGCGACAAAGCTCCAGAGCTGGCAGAGGATG
CTGGGGCCATGGAAGGCATATCGGAAGCTTAAGTCTGCCAGCATCGCTCT
CCAGTGCCGTATGCGCCAGAGGATCGCGTACGCGGAGCTGAGAGAGCTCC
GGATGAAGGCGAAGGATGTTGGCAACCTCAAGGAGGAGAATATCAAGCTG
AAGGCGGAGATCCTGGCGATGAGGGAGAGGGCGGCTGGTGCGGCCGTCGC
GGCGGGCAATGAGCAGCTTTCTACGGCGTTACAAGAGACCGCTGATCTAC
GGAGCGAGGTGGAAAAATTGACCGCTCTTTCTACGGCGTTACAAGAGACC
GCTGATCTACGGAGCGAGGTGGAAAAATTGACCGCT
back to top