mRNA_F-distichus_contig98974.19335.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig98974.19335.1
Unique NamemRNA_F-distichus_contig98974.19335.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig98974.19335.1 vs. uniprot
Match: D7FT03_ECTSI (Mitochondrial import inner membrane translocase subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT03_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 1.240e-23
Identity = 45/49 (91.84%), Postives = 48/49 (97.96%), Query Frame = 1 
Query:    1 QVQEQVQAKAMQELMTQMTDQCFNRCAKTSSGDRLTSSEQGCLAMCMDR 147
            Q+QEQVQAKA+QELMTQMTDQCFNRCAKTSSGDR+ SSEQGCLAMCMDR
Sbjct:   16 QLQEQVQAKALQELMTQMTDQCFNRCAKTSSGDRINSSEQGCLAMCMDR 64
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BLAST of mRNA_F-distichus_contig98974.19335.1 vs. uniprot
Match: A0A8K0C9B8_9COLE (Uncharacterized protein n=3 Tax=Polyphaga TaxID=41084 RepID=A0A8K0C9B8_9COLE)

HSP 1 Score: 51.6 bits (122), Expect = 2.920e-7
Identity = 26/49 (53.06%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    1 QVQEQVQAKAMQELMTQMTDQCFNRCAKTSSGDRLTSSEQGCLAMCMDR 147
            QV++Q+     QEL+T+MT++CF +C  T  G  L SSEQ C+AMCMDR
Sbjct:   19 QVKQQIAVANAQELLTKMTEKCFKKCI-TKPGTSLDSSEQKCIAMCMDR 66
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BLAST of mRNA_F-distichus_contig98974.19335.1 vs. uniprot
Match: UPI001EEAE118 (mitochondrial import inner membrane translocase subunit Tim13-A-like n=1 Tax=Homalodisca vitripennis TaxID=197043 RepID=UPI001EEAE118)

HSP 1 Score: 51.6 bits (122), Expect = 2.980e-7
Identity = 25/49 (51.02%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:    1 QVQEQVQAKAMQELMTQMTDQCFNRCAKTSSGDRLTSSEQGCLAMCMDR 147
            QV++Q+     QEL+T+MT++CF +C +T  G  L++SEQ C+AMCMDR
Sbjct:   21 QVKQQIAVANAQELLTKMTEKCFRKCVQTP-GTSLSTSEQKCVAMCMDR 68
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BLAST of mRNA_F-distichus_contig98974.19335.1 vs. uniprot
Match: A0A6J0CEK4_NEOLC (Mitochondrial import inner membrane translocase subunit n=3 Tax=Hymenoptera TaxID=7399 RepID=A0A6J0CEK4_NEOLC)

HSP 1 Score: 51.2 bits (121), Expect = 4.320e-7
Identity = 26/49 (53.06%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    1 QVQEQVQAKAMQELMTQMTDQCFNRCAKTSSGDRLTSSEQGCLAMCMDR 147
            QVQ+Q+     QEL+T+MT++CF +C +   G  L SSEQ C+AMCMDR
Sbjct:   22 QVQQQIAVANAQELLTKMTEKCFKKCIQ-KPGTSLDSSEQKCVAMCMDR 69
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BLAST of mRNA_F-distichus_contig98974.19335.1 vs. uniprot
Match: A0A1I8N4E7_MUSDO (Mitochondrial import inner membrane translocase subunit n=3 Tax=Muscinae TaxID=43910 RepID=A0A1I8N4E7_MUSDO)

HSP 1 Score: 50.8 bits (120), Expect = 5.610e-7
Identity = 25/49 (51.02%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    1 QVQEQVQAKAMQELMTQMTDQCFNRCAKTSSGDRLTSSEQGCLAMCMDR 147
            QV++Q+     QEL+T+MT++CFN+C     G  L SSEQ C++MCMDR
Sbjct:   18 QVKQQIAVANAQELLTKMTEKCFNKCIN-KPGTSLDSSEQKCISMCMDR 65
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BLAST of mRNA_F-distichus_contig98974.19335.1 vs. uniprot
Match: A0A1B0BK27_9MUSC (Mitochondrial import inner membrane translocase subunit n=5 Tax=Glossina TaxID=7393 RepID=A0A1B0BK27_9MUSC)

HSP 1 Score: 50.4 bits (119), Expect = 7.950e-7
Identity = 25/49 (51.02%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:    1 QVQEQVQAKAMQELMTQMTDQCFNRCAKTSSGDRLTSSEQGCLAMCMDR 147
            QV++Q+     QEL+T+MT++CFN+C     G +L SSEQ C++MCMDR
Sbjct:   18 QVKQQIAVANAQELLTKMTEKCFNKCI-IKPGVQLDSSEQKCISMCMDR 65
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BLAST of mRNA_F-distichus_contig98974.19335.1 vs. uniprot
Match: UPI001ED86BCA (mitochondrial import inner membrane translocase subunit Tim13 n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED86BCA)

HSP 1 Score: 50.4 bits (119), Expect = 7.950e-7
Identity = 25/49 (51.02%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    1 QVQEQVQAKAMQELMTQMTDQCFNRCAKTSSGDRLTSSEQGCLAMCMDR 147
            Q+++Q+     QEL+T+MT++CF +C  T  G  L SSEQ C+AMCMDR
Sbjct:   18 QLKQQIAVANAQELITKMTEKCFKKCI-TKPGSSLDSSEQKCIAMCMDR 65
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BLAST of mRNA_F-distichus_contig98974.19335.1 vs. uniprot
Match: UPI001D069BB5 (mitochondrial import inner membrane translocase subunit Tim13 n=2 Tax=Coccinellini TaxID=263631 RepID=UPI001D069BB5)

HSP 1 Score: 50.4 bits (119), Expect = 8.490e-7
Identity = 25/49 (51.02%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    1 QVQEQVQAKAMQELMTQMTDQCFNRCAKTSSGDRLTSSEQGCLAMCMDR 147
            QV++Q+    +QEL+T+MT++CF +C     G  L SSEQ C+AMCMDR
Sbjct:   21 QVKQQIAVANVQELLTKMTEKCFKKCIN-KPGTALDSSEQKCIAMCMDR 68
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BLAST of mRNA_F-distichus_contig98974.19335.1 vs. uniprot
Match: A0A1Q3EU78_CULTA (Mitochondrial import inner membrane translocase subunit n=1 Tax=Culex tarsalis TaxID=7177 RepID=A0A1Q3EU78_CULTA)

HSP 1 Score: 50.1 bits (118), Expect = 1.150e-6
Identity = 25/49 (51.02%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    1 QVQEQVQAKAMQELMTQMTDQCFNRCAKTSSGDRLTSSEQGCLAMCMDR 147
            QV++Q+     QEL+T+MT++CF +C  +  G  L SSEQ C+AMCMDR
Sbjct:   19 QVKQQIALANAQELLTKMTEKCFKKCI-SKPGTELDSSEQKCIAMCMDR 66
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BLAST of mRNA_F-distichus_contig98974.19335.1 vs. uniprot
Match: A0A553PHZ3_TIGCA (Mitochondrial import inner membrane translocase subunit n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553PHZ3_TIGCA)

HSP 1 Score: 50.1 bits (118), Expect = 1.180e-6
Identity = 26/48 (54.17%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:    4 VQEQVQAKAMQELMTQMTDQCFNRCAKTSSGDRLTSSEQGCLAMCMDR 147
            VQ QV    MQEL++++TD+CF +C  +S G  L SS+Q C+AMCMDR
Sbjct:   21 VQAQVALANMQELLSKVTDKCFKKCI-SSPGTSLGSSDQKCIAMCMDR 67
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig98974.19335.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT03_ECTSI1.240e-2391.84Mitochondrial import inner membrane translocase su... [more]
A0A8K0C9B8_9COLE2.920e-753.06Uncharacterized protein n=3 Tax=Polyphaga TaxID=41... [more]
UPI001EEAE1182.980e-751.02mitochondrial import inner membrane translocase su... [more]
A0A6J0CEK4_NEOLC4.320e-753.06Mitochondrial import inner membrane translocase su... [more]
A0A1I8N4E7_MUSDO5.610e-751.02Mitochondrial import inner membrane translocase su... [more]
A0A1B0BK27_9MUSC7.950e-751.02Mitochondrial import inner membrane translocase su... [more]
UPI001ED86BCA7.950e-751.02mitochondrial import inner membrane translocase su... [more]
UPI001D069BB58.490e-751.02mitochondrial import inner membrane translocase su... [more]
A0A1Q3EU78_CULTA1.150e-651.02Mitochondrial import inner membrane translocase su... [more]
A0A553PHZ3_TIGCA1.180e-654.17Mitochondrial import inner membrane translocase su... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig98974contigF-distichus_contig98974:1292..1441 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.9
Seed ortholog evalue1.5e-13
Seed eggNOG ortholog2880.D7FT03
Preferred nameTIMM13
KEGG koko:K17781
KEGG TC3.A.8.1
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0001650,GO:0003008,GO:0003674,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005744,GO:0005758,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0007600,GO:0007605,GO:0008104,GO:0008150,GO:0008270,GO:0008320,GO:0008565,GO:0009987,GO:0015031,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0016043,GO:0017038,GO:0019866,GO:0022804,GO:0022857,GO:0022884,GO:0031090,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0031981,GO:0032501,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042719,GO:0042886,GO:0042887,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044452,GO:0044455,GO:0044464,GO:0044743,GO:0045039,GO:0045184,GO:0046872,GO:0046907,GO:0046914,GO:0050877,GO:0050954,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0061024,GO:0065002,GO:0070013,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072321,GO:0072594,GO:0072655,GO:0072657,GO:0090150,GO:0090151,GO:0098796,GO:0098798,GO:0098800,GO:1904680,GO:1990351,GO:1990542
EggNOG free text desc.protein import into mitochondrial inner membrane
EggNOG OGsKOG1733@1,KOG1733@2759
Ec32 ortholog descriptionMitochondrial protein import TIM8.13 complex subunit, Tim8 homolog
Ec32 orthologEc-24_004310.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000,ko03029
Exons1
Model size150
Cds size120
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931170.326032-UTR-F-distichus_contig98974:1291..13211622931170.326032-UTR-F-distichus_contig98974:1291..1321Fucus distichus monoicousUTRF-distichus_contig98974 1292..1321 +
1690886188.9424806-UTR-F-distichus_contig98974:1291..13211690886188.9424806-UTR-F-distichus_contig98974:1291..1321Fucus distichus monoicousUTRF-distichus_contig98974 1292..1321 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931170.3389993-CDS-F-distichus_contig98974:1321..14411622931170.3389993-CDS-F-distichus_contig98974:1321..1441Fucus distichus monoicousCDSF-distichus_contig98974 1322..1441 +
1690886188.961129-CDS-F-distichus_contig98974:1321..14411690886188.961129-CDS-F-distichus_contig98974:1321..1441Fucus distichus monoicousCDSF-distichus_contig98974 1322..1441 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig98974.19335.1prot_F-distichus_contig98974.19335.1Fucus distichus monoicouspolypeptideF-distichus_contig98974 1322..1441 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig98974.19335.1

>prot_F-distichus_contig98974.19335.1 ID=prot_F-distichus_contig98974.19335.1|Name=mRNA_F-distichus_contig98974.19335.1|organism=Fucus distichus monoicous|type=polypeptide|length=40bp
MQELMTQMTDQCFNRCAKTSSGDRLTSSEQGCLAMCMDR*
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mRNA from alignment at F-distichus_contig98974:1292..1441+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig98974.19335.1 ID=mRNA_F-distichus_contig98974.19335.1|Name=mRNA_F-distichus_contig98974.19335.1|organism=Fucus distichus monoicous|type=mRNA|length=150bp|location=Sequence derived from alignment at F-distichus_contig98974:1292..1441+ (Fucus distichus monoicous)
CAGGTACAGGAGCAGGTCCAGGCGAAGGCCATGCAAGAGTTAATGACGCA
GATGACGGACCAGTGCTTTAACAGATGCGCCAAAACTTCGAGCGGAGACC
GCCTCACGTCTTCCGAGCAGGGGTGTCTGGCGATGTGCATGGACAGGTAA
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Coding sequence (CDS) from alignment at F-distichus_contig98974:1292..1441+

>mRNA_F-distichus_contig98974.19335.1 ID=mRNA_F-distichus_contig98974.19335.1|Name=mRNA_F-distichus_contig98974.19335.1|organism=Fucus distichus monoicous|type=CDS|length=240bp|location=Sequence derived from alignment at F-distichus_contig98974:1292..1441+ (Fucus distichus monoicous)
ATGCAAGAGTTAATGACGCAGATGACGGACCAGTGCTTTAACAGATGCGC
CAAAACTTCGAGCGGAGACCGCCTCACGTCTTCCGAGCAGGGGTGTCTGG
CGATGTGCATGGACAGGTAAATGCAAGAGTTAATGACGCAGATGACGGAC
CAGTGCTTTAACAGATGCGCCAAAACTTCGAGCGGAGACCGCCTCACGTC
TTCCGAGCAGGGGTGTCTGGCGATGTGCATGGACAGGTAA
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