mRNA_F-distichus_contig9889.19328.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig9889.19328.1
Unique NamemRNA_F-distichus_contig9889.19328.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig9889.19328.1 vs. uniprot
Match: A0A6H5L112_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L112_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 8.170e-41
Identity = 74/81 (91.36%), Postives = 76/81 (93.83%), Query Frame = 1 
Query:    1 VIDRQQFEVVVHAKMGAKPFAKERIAPYRKDVLTKSGKTVGGGDPSRKKKLLEKQKKGKARAKTVGRVQLSQEAFWAVLGG 243
            VIDRQQFEVVVHAKMGA+PFAKERI PYRKDVL KSGK VGGGD SRKKKLL+KQKKGKARAKTVGRVQLSQEAFWAVL G
Sbjct:  229 VIDRQQFEVVVHAKMGARPFAKERIPPYRKDVLMKSGKLVGGGDSSRKKKLLDKQKKGKARAKTVGRVQLSQEAFWAVLSG 309
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BLAST of mRNA_F-distichus_contig9889.19328.1 vs. uniprot
Match: D8LK14_ECTSI (Translation factor GUF1 homolog, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK14_ECTSI)

HSP 1 Score: 145 bits (365), Expect = 1.180e-38
Identity = 74/81 (91.36%), Postives = 76/81 (93.83%), Query Frame = 1 
Query:    1 VIDRQQFEVVVHAKMGAKPFAKERIAPYRKDVLTKSGKTVGGGDPSRKKKLLEKQKKGKARAKTVGRVQLSQEAFWAVLGG 243
            VIDRQQFEVVVHAKMGA+PFAKERI PYRKDVL KSGK VGGGD SRKKKLL+KQKKGKARAKTVGRVQLSQEAFWAVL G
Sbjct:  611 VIDRQQFEVVVHAKMGARPFAKERIPPYRKDVLMKSGKLVGGGDSSRKKKLLDKQKKGKARAKTVGRVQLSQEAFWAVLSG 691
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BLAST of mRNA_F-distichus_contig9889.19328.1 vs. uniprot
Match: A0A7S2FQV9_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FQV9_9STRA)

HSP 1 Score: 129 bits (325), Expect = 5.910e-34
Identity = 64/79 (81.01%), Postives = 73/79 (92.41%), Query Frame = 1 
Query:    1 VIDRQQFEVVVHAKMGAKPFAKERIAPYRKDVLTKSGKTVGGGDPSRKKKLLEKQKKGKARAKTVGRVQLSQEAFWAVL 237
            V+ RQQFE+V+ AK+GAK  A+ RIAPYRKDVLTKSGKTVGGGD SRK+KLL+KQKKGKARAKTVG+V+LSQEAFWAVL
Sbjct:  361 VVTRQQFEIVIQAKIGAKVLARTRIAPYRKDVLTKSGKTVGGGDSSRKRKLLDKQKKGKARAKTVGKVKLSQEAFWAVL 439
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BLAST of mRNA_F-distichus_contig9889.19328.1 vs. uniprot
Match: A0A836CD47_9STRA (Translation factor GUF1 homolog, mitochondrial n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD47_9STRA)

HSP 1 Score: 129 bits (325), Expect = 1.790e-33
Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = 1 
Query:    1 VIDRQQFEVVVHAKMGAKPFAKERIAPYRKDVLTKSGKTVGGGDPSRKKKLLEKQKKGKARAKTVGRVQLSQEAFWAVL 237
            VI RQQFEVV+ A++GAKPFA+ERI PYRKDVL KSGKTVGGGDPSRK+KLL+KQK+GK RAKTVG+VQL Q AFWA+L
Sbjct:  461 VIPRQQFEVVIQARLGAKPFARERIPPYRKDVLIKSGKTVGGGDPSRKRKLLDKQKEGKRRAKTVGKVQLPQSAFWALL 539
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BLAST of mRNA_F-distichus_contig9889.19328.1 vs. uniprot
Match: A0A836CPP8_9STRA (Translation factor GUF1 homolog, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPP8_9STRA)

HSP 1 Score: 129 bits (325), Expect = 3.670e-33
Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = 1 
Query:    1 VIDRQQFEVVVHAKMGAKPFAKERIAPYRKDVLTKSGKTVGGGDPSRKKKLLEKQKKGKARAKTVGRVQLSQEAFWAVL 237
            VI RQQFEVV+ A++GAKPFA+ERI PYRKDVL KSGKTVGGGDPSRK+KLL+KQK+GK RAKTVG+VQL Q AFWA+L
Sbjct:  609 VIPRQQFEVVIQARLGAKPFARERIPPYRKDVLIKSGKTVGGGDPSRKRKLLDKQKEGKRRAKTVGKVQLPQSAFWALL 687
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BLAST of mRNA_F-distichus_contig9889.19328.1 vs. uniprot
Match: A0A7S2SUD5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUD5_9STRA)

HSP 1 Score: 125 bits (315), Expect = 1.280e-32
Identity = 62/79 (78.48%), Postives = 73/79 (92.41%), Query Frame = 1 
Query:    1 VIDRQQFEVVVHAKMGAKPFAKERIAPYRKDVLTKSGKTVGGGDPSRKKKLLEKQKKGKARAKTVGRVQLSQEAFWAVL 237
            VI RQQFEVV+ AK+G K  A+ERIAP+RKDVLTKSGKTVGGGD +RK+KLLEKQK+GKARAK+VG+V+L+QEAFWAVL
Sbjct:  345 VIRRQQFEVVIQAKVGVKVIARERIAPFRKDVLTKSGKTVGGGDATRKRKLLEKQKRGKARAKSVGKVELTQEAFWAVL 423
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BLAST of mRNA_F-distichus_contig9889.19328.1 vs. uniprot
Match: A0A397FZM7_9STRA (LepA_C domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397FZM7_9STRA)

HSP 1 Score: 116 bits (290), Expect = 2.900e-30
Identity = 57/79 (72.15%), Postives = 68/79 (86.08%), Query Frame = 1 
Query:    1 VIDRQQFEVVVHAKMGAKPFAKERIAPYRKDVLTKSGKTVGGGDPSRKKKLLEKQKKGKARAKTVGRVQLSQEAFWAVL 237
            VIDRQQ+E+ + A +GAK FAKERIAP+RKDVL KSGK VGGGD +RK+KLL+KQK+GK R KTVG VQLSQ AFW+V+
Sbjct:  175 VIDRQQYEISIQATLGAKVFAKERIAPFRKDVLIKSGKAVGGGDITRKQKLLKKQKEGKKRMKTVGNVQLSQNAFWSVM 253
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BLAST of mRNA_F-distichus_contig9889.19328.1 vs. uniprot
Match: A0A3R7B1Y7_9STRA (LepA_C domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7B1Y7_9STRA)

HSP 1 Score: 116 bits (290), Expect = 4.420e-30
Identity = 57/79 (72.15%), Postives = 68/79 (86.08%), Query Frame = 1 
Query:    1 VIDRQQFEVVVHAKMGAKPFAKERIAPYRKDVLTKSGKTVGGGDPSRKKKLLEKQKKGKARAKTVGRVQLSQEAFWAVL 237
            VIDRQQ+E+ + A +GAK FAKERIAP+RKDVL KSGK VGGGD +RK+KLL+KQK+GK R KTVG VQLSQ AFW+V+
Sbjct:  194 VIDRQQYEISIQATLGAKVFAKERIAPFRKDVLIKSGKAVGGGDITRKQKLLKKQKEGKKRMKTVGNVQLSQNAFWSVM 272
[Close]
BLAST of mRNA_F-distichus_contig9889.19328.1 vs. uniprot
Match: A0A418F0I7_9STRA (Uncharacterized protein n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418F0I7_9STRA)

HSP 1 Score: 116 bits (291), Expect = 5.270e-30
Identity = 57/79 (72.15%), Postives = 68/79 (86.08%), Query Frame = 1 
Query:    1 VIDRQQFEVVVHAKMGAKPFAKERIAPYRKDVLTKSGKTVGGGDPSRKKKLLEKQKKGKARAKTVGRVQLSQEAFWAVL 237
            VIDRQQ+E+ + A +GAK FAKERIAP+RKDVL KSGK VGGGD +RK+KLL+KQK+GK R KTVG VQLSQ AFW+V+
Sbjct:  219 VIDRQQYEISIQATLGAKVFAKERIAPFRKDVLIKSGKAVGGGDVTRKQKLLKKQKEGKKRMKTVGNVQLSQNAFWSVM 297
[Close]
BLAST of mRNA_F-distichus_contig9889.19328.1 vs. uniprot
Match: A0A5A8D8U6_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D8U6_CAFRO)

HSP 1 Score: 115 bits (288), Expect = 1.020e-29
Identity = 60/79 (75.95%), Postives = 68/79 (86.08%), Query Frame = 1 
Query:    1 VIDRQQFEVVVHAKMGAKPFAKERIAPYRKDVLTKSGKTVGGGDPSRKKKLLEKQKKGKARAKTVGRVQLSQEAFWAVL 237
            VI RQQFEVV+ A  G K FA+ERI PYRKDVL++SGKTVGGGD +RK+KLLEKQKKGKAR ++VG VQLSQEAF AVL
Sbjct:  199 VIRRQQFEVVIQAAFGKKIFARERIPPYRKDVLSRSGKTVGGGDLTRKRKLLEKQKKGKARMRSVGNVQLSQEAFHAVL 277
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig9889.19328.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L112_9PHAE8.170e-4191.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LK14_ECTSI1.180e-3891.36Translation factor GUF1 homolog, mitochondrial n=1... [more]
A0A7S2FQV9_9STRA5.910e-3481.01Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A836CD47_9STRA1.790e-3379.75Translation factor GUF1 homolog, mitochondrial n=2... [more]
A0A836CPP8_9STRA3.670e-3379.75Translation factor GUF1 homolog, mitochondrial n=1... [more]
A0A7S2SUD5_9STRA1.280e-3278.48Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A397FZM7_9STRA2.900e-3072.15LepA_C domain-containing protein n=1 Tax=Aphanomyc... [more]
A0A3R7B1Y7_9STRA4.420e-3072.15LepA_C domain-containing protein n=1 Tax=Aphanomyc... [more]
A0A418F0I7_9STRA5.270e-3072.15Uncharacterized protein n=7 Tax=Aphanomyces astaci... [more]
A0A5A8D8U6_CAFRO1.020e-2975.95Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig9889contigF-distichus_contig9889:613..1605 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.4
Seed ortholog evalue2.4e-32
Seed eggNOG ortholog2880.D8LK14
KEGG koko:K03596,ko:K21594
KEGG Pathwayko05134,map05134
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0097159,GO:0097367,GO:1901265,GO:1901363
EggNOG free text desc.GTPase activity
EggNOG OGsCOG0481@1,KOG0462@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03029
Exons2
Model size255
Cds size255
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931169.649-CDS-F-distichus_contig9889:612..6981622931169.649-CDS-F-distichus_contig9889:612..698Fucus distichus monoicousCDSF-distichus_contig9889 613..698 +
1690886188.6664162-CDS-F-distichus_contig9889:612..6981690886188.6664162-CDS-F-distichus_contig9889:612..698Fucus distichus monoicousCDSF-distichus_contig9889 613..698 +
1622931169.667379-CDS-F-distichus_contig9889:1436..16051622931169.667379-CDS-F-distichus_contig9889:1436..1605Fucus distichus monoicousCDSF-distichus_contig9889 1437..1605 +
1690886188.6802604-CDS-F-distichus_contig9889:1436..16051690886188.6802604-CDS-F-distichus_contig9889:1436..1605Fucus distichus monoicousCDSF-distichus_contig9889 1437..1605 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig9889.19328.1prot_F-distichus_contig9889.19328.1Fucus distichus monoicouspolypeptideF-distichus_contig9889 613..1605 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig9889.19328.1

>prot_F-distichus_contig9889.19328.1 ID=prot_F-distichus_contig9889.19328.1|Name=mRNA_F-distichus_contig9889.19328.1|organism=Fucus distichus monoicous|type=polypeptide|length=85bp
VIDRQQFEVVVHAKMGAKPFAKERIAPYRKDVLTKSGKTVGGGDPSRKKK
LLEKQKKGKARAKTVGRVQLSQEAFWAVLGGAGR*
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mRNA from alignment at F-distichus_contig9889:613..1605+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig9889.19328.1 ID=mRNA_F-distichus_contig9889.19328.1|Name=mRNA_F-distichus_contig9889.19328.1|organism=Fucus distichus monoicous|type=mRNA|length=993bp|location=Sequence derived from alignment at F-distichus_contig9889:613..1605+ (Fucus distichus monoicous)
GTGATCGACCGACAGCAGTTCGAGGTCGTCGTGCACGCCAAGATGGGTGC
CAAGCCCTTCGCGAAGGAGCGAATCGCTCCCTACCGGTGAGCCTACAATA
ACCTTTACACGTCCCAAGAGTACTGTATGTAAATAAAAGTGTACGGTTGT
GTGTGGACCTTTGTCTACCTACCATCTCGAAAATGTCGAAGATGGTGGAG
AGGGAGAGGGCGAGGAAGAGGAAGAGGGTGTCTGTGTCTGCGTCTTGGTT
TATACTATGATCATGTATGTGTGCACCAAAGACGGAGGGCTTGTTGCGTG
GCTTGGCTTGGGGACGTGAGCGCGCTCAATGTCGGTCCAATGTCATCGGT
GGTCCAATGTCGTCGGTATCGTTCTTCTTGTCGTCGGTATCGTTCTTTTT
GCCGAGCGGTCGTGGCTCATTGGCTGCTTTTCCGCAGGAGATGCTTGGAT
TCGATATTCGATATTATTCGATATTATTGATCGCGGCCTTGCCTTGTTAG
AGAGTATCTGCCATATATATATCCCTTCCTCTCCTGTGCATCGATATCGT
TAGACTATGACATTGTTAAAAGACAATGACCACAGCACAGTAGTACGGTA
CAGTATTACAGCAGCACTGCTTCTCCTAACCTGAAAGGTATCCTACATGT
ATGTATAGAGCTAGCTCTAGACGGTTTATTTCAAGATAAAATGAAACAAA
AAACGTGCCCTTCATGTCAGGTAAAAAAAACAAGTATATATATACTCTGT
ATGTATTGGTAAAAATATAAATTTGTCGTGCCACTCACGACCATGCCGTT
GTGCCGTTATGTCGGATCCTGCAGGAAGGACGTGCTGACCAAGTCGGGCA
AGACGGTAGGCGGGGGCGACCCCTCGCGGAAGAAGAAACTTCTGGAAAAG
CAGAAGAAGGGCAAGGCGAGGGCTAAGACCGTGGGCCGCGTGCAGCTCAG
CCAGGAGGCGTTTTGGGCGGTGTTGGGAGGTGCTGGTCGATAG
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Coding sequence (CDS) from alignment at F-distichus_contig9889:613..1605+

>mRNA_F-distichus_contig9889.19328.1 ID=mRNA_F-distichus_contig9889.19328.1|Name=mRNA_F-distichus_contig9889.19328.1|organism=Fucus distichus monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at F-distichus_contig9889:613..1605+ (Fucus distichus monoicous)
GTGATCGACCGACAGCAGTTCGAGGTCGTCGTGCACGCCAAGATGGGTGC
CAAGCCCTTCGCGAAGGAGCGAATCGCTCCCTACCGGTGATCGACCGACA
GCAGTTCGAGGTCGTCGTGCACGCCAAGATGGGTGCCAAGCCCTTCGCGA
AGGAGCGAATCGCTCCCTACCGGAAGGACGTGCTGACCAAGTCGGGCAAG
ACGGTAGGCGGGGGCGACCCCTCGCGGAAGAAGAAACTTCTGGAAAAGCA
GAAGAAGGGCAAGGCGAGGGCTAAGACCGTGGGCCGCGTGCAGCTCAGCC
AGGAGGCGTTTTGGGCGGTGTTGGGAGGTGCTGGTCGATAGGAAGGACGT
GCTGACCAAGTCGGGCAAGACGGTAGGCGGGGGCGACCCCTCGCGGAAGA
AGAAACTTCTGGAAAAGCAGAAGAAGGGCAAGGCGAGGGCTAAGACCGTG
GGCCGCGTGCAGCTCAGCCAGGAGGCGTTTTGGGCGGTGTTGGGAGGTGC
TGGTCGATAG
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