mRNA_F-distichus_contig98865.19326.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig98865.19326.1
Unique NamemRNA_F-distichus_contig98865.19326.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig98865.19326.1 vs. uniprot
Match: A0A6H5JCX1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX1_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 4.580e-26
Identity = 50/64 (78.12%), Postives = 58/64 (90.62%), Query Frame = 1 
Query:    1 YKKLPPRREFKDYYEVIDNPIDLQIIASKVRNAKYHTLKAFEADVHLLFDNAREYNLEGSQVYQ 192
            YKK+PPRREFK YYEVI+NPIDLQ+I+S+VR  +YHTL AFE+DV LLFDNAREYN+EGS VYQ
Sbjct:  468 YKKVPPRREFKAYYEVIENPIDLQMISSRVRKGEYHTLAAFESDVMLLFDNAREYNVEGSLVYQ 531
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BLAST of mRNA_F-distichus_contig98865.19326.1 vs. uniprot
Match: D8LJ67_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ67_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 3.050e-25
Identity = 49/64 (76.56%), Postives = 57/64 (89.06%), Query Frame = 1 
Query:    1 YKKLPPRREFKDYYEVIDNPIDLQIIASKVRNAKYHTLKAFEADVHLLFDNAREYNLEGSQVYQ 192
            YKK+PPRREFK YYEVI+NPIDLQ+I+S+VR  +YHTL AF +DV LLFDNAREYN+EGS VYQ
Sbjct:  432 YKKVPPRREFKAYYEVIENPIDLQMISSRVRKGEYHTLAAFASDVMLLFDNAREYNVEGSLVYQ 495
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BLAST of mRNA_F-distichus_contig98865.19326.1 vs. uniprot
Match: A0A5E8C6A9_9ASCO (Uncharacterized protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C6A9_9ASCO)

HSP 1 Score: 74.7 bits (182), Expect = 3.860e-14
Identity = 32/64 (50.00%), Postives = 45/64 (70.31%), Query Frame = 1 
Query:    1 YKKLPPRREFKDYYEVIDNPIDLQIIASKVRNAKYHTLKAFEADVHLLFDNAREYNLEGSQVYQ 192
            +K+LP +R++  YY +I+NPI + II  ++ N  Y  L  F AD  L+FDNAR+YN EGSQVY+
Sbjct: 1783 FKELPSKRQYATYYAIIENPIAMDIINKRINNNTYQRLGEFRADFQLMFDNARKYNEEGSQVYE 1846
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BLAST of mRNA_F-distichus_contig98865.19326.1 vs. uniprot
Match: A0A293LRW5_ORNER (Polybromo-1 (Fragment) n=2 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293LRW5_ORNER)

HSP 1 Score: 74.3 bits (181), Expect = 5.250e-14
Identity = 32/64 (50.00%), Postives = 47/64 (73.44%), Query Frame = 1 
Query:    1 YKKLPPRREFKDYYEVIDNPIDLQIIASKVRNAKYHTLKAFEADVHLLFDNAREYNLEGSQVYQ 192
            + + P +R++ DYYEVI+NPID++ I   V+N KY T +A  +D+ L+F+N R YN EGSQ+YQ
Sbjct:   84 FMERPSKRDYPDYYEVINNPIDMRTIEENVKNNKYFTEEAMVSDLRLMFNNCRLYNEEGSQIYQ 147
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BLAST of mRNA_F-distichus_contig98865.19326.1 vs. uniprot
Match: A0A0N4V4X7_ENTVE (Uncharacterized protein n=1 Tax=Enterobius vermicularis TaxID=51028 RepID=A0A0N4V4X7_ENTVE)

HSP 1 Score: 74.3 bits (181), Expect = 5.260e-14
Identity = 31/64 (48.44%), Postives = 47/64 (73.44%), Query Frame = 1 
Query:    1 YKKLPPRREFKDYYEVIDNPIDLQIIASKVRNAKYHTLKAFEADVHLLFDNAREYNLEGSQVYQ 192
            ++KLP RRE  DYYEVI+NP+D   I  K+R+ KY +++    DV LL +NAR YN++GS++++
Sbjct: 1227 FEKLPSRRELPDYYEVIENPMDFNRIKKKIRDGKYSSVQDMGKDVKLLCENARRYNMDGSEIFE 1290
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BLAST of mRNA_F-distichus_contig98865.19326.1 vs. uniprot
Match: UPI0018D91EA5 (protein polybromo-1-like isoform X2 n=9 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D91EA5)

HSP 1 Score: 74.3 bits (181), Expect = 5.280e-14
Identity = 31/64 (48.44%), Postives = 47/64 (73.44%), Query Frame = 1 
Query:    1 YKKLPPRREFKDYYEVIDNPIDLQIIASKVRNAKYHTLKAFEADVHLLFDNAREYNLEGSQVYQ 192
            ++KLPPR +F DYY++I+NPID+++IA  +R+  Y TL   E D+ L+  NA+ +N  GSQVY+
Sbjct:  281 FRKLPPRSQFPDYYDIINNPIDMKVIAKNIRSGHYATLTDLEKDLLLMVKNAKTFNEPGSQVYK 344
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BLAST of mRNA_F-distichus_contig98865.19326.1 vs. uniprot
Match: A0A507FH50_9FUNG (Uncharacterized protein n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507FH50_9FUNG)

HSP 1 Score: 73.6 bits (179), Expect = 9.820e-14
Identity = 34/63 (53.97%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:    1 YKKLPPRREFKDYYEVIDNPIDLQIIASKVRNAKYHTLKAFEADVHLLFDNAREYNLEGSQVY 189
            ++ LPP+R FKDYYE+I +PI L+ I  K+   KY +L    AD  LLF+NAR YN EGS VY
Sbjct: 1153 FEVLPPKRGFKDYYEIIQSPICLEQIQKKINGMKYFSLHEMVADFTLLFENARSYNAEGSDVY 1215
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BLAST of mRNA_F-distichus_contig98865.19326.1 vs. uniprot
Match: A0A8B7YTC1_ACAPL (protein polybromo-1-like isoform X1 n=8 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7YTC1_ACAPL)

HSP 1 Score: 73.6 bits (179), Expect = 9.850e-14
Identity = 30/64 (46.88%), Postives = 47/64 (73.44%), Query Frame = 1 
Query:    1 YKKLPPRREFKDYYEVIDNPIDLQIIASKVRNAKYHTLKAFEADVHLLFDNAREYNLEGSQVYQ 192
            ++KLPPR +F DYY++I NPID+++IA  +R+ +Y +L   E D+ L+  NA+ +N  GSQVY+
Sbjct:  288 FRKLPPRSQFPDYYDIIKNPIDMKVIAKNIRSGRYASLSDLEKDLLLMVKNAKTFNEPGSQVYK 351
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BLAST of mRNA_F-distichus_contig98865.19326.1 vs. uniprot
Match: A0A3P6TPB9_LITSI (Uncharacterized protein n=2 Tax=Litomosoides sigmodontis TaxID=42156 RepID=A0A3P6TPB9_LITSI)

HSP 1 Score: 73.2 bits (178), Expect = 1.320e-13
Identity = 28/63 (44.44%), Postives = 48/63 (76.19%), Query Frame = 1 
Query:    1 YKKLPPRREFKDYYEVIDNPIDLQIIASKVRNAKYHTLKAFEADVHLLFDNAREYNLEGSQVY 189
            +++LP RRE  DYYE+I+ P+DL  +  K+R+ KYH+++    D+ LL +NAR+YN++GS+++
Sbjct:  427 FEQLPSRRELPDYYEIIEKPMDLNKVKRKIRDGKYHSVQDMGNDIRLLCNNARKYNIDGSEIF 489
[Close]
BLAST of mRNA_F-distichus_contig98865.19326.1 vs. uniprot
Match: A0A813LY33_9BILA (Hypothetical protein n=1 Tax=Brachionus calyciflorus TaxID=104777 RepID=A0A813LY33_9BILA)

HSP 1 Score: 73.2 bits (178), Expect = 1.340e-13
Identity = 32/61 (52.46%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:   10 LPPRREFKDYYEVIDNPIDLQIIASKVRNAKYHTLKAFEADVHLLFDNAREYNLEGSQVYQ 192
            LPP+  + DYYE+I+NPIDL+ IA+ + + KY  LK F+AD+ LLFDNA+ YN   S +Y+
Sbjct:   74 LPPKTSYPDYYELINNPIDLKTIANNILDKKYQNLKEFDADLTLLFDNAKRYNDPKSLIYK 134
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig98865.19326.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCX1_9PHAE4.580e-2678.13Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D8LJ67_ECTSI3.050e-2576.56Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A5E8C6A9_9ASCO3.860e-1450.00Uncharacterized protein n=1 Tax=Saprochaete ingens... [more]
A0A293LRW5_ORNER5.250e-1450.00Polybromo-1 (Fragment) n=2 Tax=Ornithodoros errati... [more]
A0A0N4V4X7_ENTVE5.260e-1448.44Uncharacterized protein n=1 Tax=Enterobius vermicu... [more]
UPI0018D91EA55.280e-1448.44protein polybromo-1-like isoform X2 n=9 Tax=Patiri... [more]
A0A507FH50_9FUNG9.820e-1453.97Uncharacterized protein n=1 Tax=Chytriomyces confe... [more]
A0A8B7YTC1_ACAPL9.850e-1446.88protein polybromo-1-like isoform X1 n=8 Tax=Acanth... [more]
A0A3P6TPB9_LITSI1.320e-1344.44Uncharacterized protein n=2 Tax=Litomosoides sigmo... [more]
A0A813LY33_9BILA1.340e-1352.46Hypothetical protein n=1 Tax=Brachionus calyciflor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig98865contigF-distichus_contig98865:1300..1971 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.5
Seed ortholog evalue9.2e-21
Seed eggNOG ortholog2880.D8LJ67
KEGG koko:K11647,ko:K11756,ko:K11757,ko:K11786,ko:K15192
KEGG Pathwayko04714,ko05225,map04714,map05225
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000228,GO:0000785,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006325,GO:0006338,GO:0006355,GO:0006357,GO:0006996,GO:0008026,GO:0008094,GO:0008144,GO:0008150,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0010959,GO:0016043,GO:0016462,GO:0016514,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0030554,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032392,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032879,GO:0032991,GO:0034756,GO:0035639,GO:0036094,GO:0042623,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043269,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0050789,GO:0050794,GO:0051049,GO:0051171,GO:0051252,GO:0051276,GO:0060255,GO:0065007,GO:0070013,GO:0070035,GO:0070603,GO:0071103,GO:0071840,GO:0080090,GO:0097159,GO:0097367,GO:0140097,GO:1900390,GO:1900393,GO:1900400,GO:1901265,GO:1901363,GO:1902494,GO:1903506,GO:1904949,GO:2000112,GO:2001141
EggNOG free text desc.aortic smooth muscle cell differentiation
EggNOG OGsCOG0553@1,KOG0386@2759
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03021,ko03036
Exons2
Model size192
Cds size192
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931169.522627-CDS-F-distichus_contig98865:1299..13711622931169.522627-CDS-F-distichus_contig98865:1299..1371Fucus distichus monoicousCDSF-distichus_contig98865 1300..1371 +
1690886188.6264532-CDS-F-distichus_contig98865:1299..13711690886188.6264532-CDS-F-distichus_contig98865:1299..1371Fucus distichus monoicousCDSF-distichus_contig98865 1300..1371 +
1622931169.5419555-CDS-F-distichus_contig98865:1851..19711622931169.5419555-CDS-F-distichus_contig98865:1851..1971Fucus distichus monoicousCDSF-distichus_contig98865 1852..1971 +
1690886188.6413362-CDS-F-distichus_contig98865:1851..19711690886188.6413362-CDS-F-distichus_contig98865:1851..1971Fucus distichus monoicousCDSF-distichus_contig98865 1852..1971 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig98865.19326.1prot_F-distichus_contig98865.19326.1Fucus distichus monoicouspolypeptideF-distichus_contig98865 1300..1971 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig98865.19326.1

>prot_F-distichus_contig98865.19326.1 ID=prot_F-distichus_contig98865.19326.1|Name=mRNA_F-distichus_contig98865.19326.1|organism=Fucus distichus monoicous|type=polypeptide|length=64bp
YKKLPPRREFKDYYEVIDNPIDLQIIASKVRNAKYHTLKAFEADVHLLFD
NAREYNLEGSQVYQ
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mRNA from alignment at F-distichus_contig98865:1300..1971+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig98865.19326.1 ID=mRNA_F-distichus_contig98865.19326.1|Name=mRNA_F-distichus_contig98865.19326.1|organism=Fucus distichus monoicous|type=mRNA|length=672bp|location=Sequence derived from alignment at F-distichus_contig98865:1300..1971+ (Fucus distichus monoicous)
TACAAGAAGCTTCCCCCCCGGAGAGAGTTCAAGGATTACTACGAAGTCAT
CGACAATCCCATCGATCTGCAGGTTAGGCCGCTCTCGATGCCAGAGCCTG
AAGGAGCTGCGCTGGTTCAGCAGTGTTGTTGGTGTTGATGTTAGTTGAGC
AGCACTCTGTTTTACCTGCCTCCTTTGTCTTTTGCCATTTTTGTGTGAAA
AAAGGGGTTAAAAAACAGTGGGAAAGGAACGCAACAGAAAAATAATCCAT
TATCTCTAGAAAACTATACTCTTGGGGTGCGCGAGGGCACGGTCGTCTCC
TGGGCGTGGGCGAGAGAGGCTCTGTTAAATGTAATTCGTGGCGGCCTGGA
ACGGCTCTCCTTGTGAGGCAGAGGTACCGTACATACATACATACATACAT
ACATACATACATGAACCGTTTCGTGTTGTGGTAAGCTCGTCTACGAATAG
ATAATAGAGCGTCTGTCTCATGTGCATTATCGAAGACGTGCATATCGTCG
TGTTTTGTTTTTTATCTGTGACTTTTCGTGGGGGGGGGTGGGGCTGCAAA
AGATCATCGCTTCCAAGGTGCGTAATGCGAAATATCATACCCTGAAGGCT
TTCGAGGCCGATGTTCATCTGCTATTCGACAACGCTCGCGAGTACAATTT
GGAGGGGTCACAGGTCTACCAG
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Coding sequence (CDS) from alignment at F-distichus_contig98865:1300..1971+

>mRNA_F-distichus_contig98865.19326.1 ID=mRNA_F-distichus_contig98865.19326.1|Name=mRNA_F-distichus_contig98865.19326.1|organism=Fucus distichus monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at F-distichus_contig98865:1300..1971+ (Fucus distichus monoicous)
TACAAGAAGCTTCCCCCCCGGAGAGAGTTCAAGGATTACTACGAAGTCAT
CGACAATCCCATCGATCTGCAGTACAAGAAGCTTCCCCCCCGGAGAGAGT
TCAAGGATTACTACGAAGTCATCGACAATCCCATCGATCTGCAGATCATC
GCTTCCAAGGTGCGTAATGCGAAATATCATACCCTGAAGGCTTTCGAGGC
CGATGTTCATCTGCTATTCGACAACGCTCGCGAGTACAATTTGGAGGGGT
CACAGGTCTACCAGATCATCGCTTCCAAGGTGCGTAATGCGAAATATCAT
ACCCTGAAGGCTTTCGAGGCCGATGTTCATCTGCTATTCGACAACGCTCG
CGAGTACAATTTGGAGGGGTCACAGGTCTACCAG
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