mRNA_F-distichus_contig98841.19324.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig98841.19324.1
Unique NamemRNA_F-distichus_contig98841.19324.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig98841.19324.1 vs. uniprot
Match: A0A6H5JX72_9PHAE (FAD_binding_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX72_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 7.740e-38
Identity = 69/78 (88.46%), Postives = 73/78 (93.59%), Query Frame = 1
Query:   10 GAKPSVAVVGAGPAGLFAALELVEAGIKPVIVERGMPVERRGREIGALFARRILNPESNLCYGEGGAGTWSDGKLTTR 243
            G  PSV +VGAGPAGLFAALELVE G+KP+IVERGMPVERRGREIGALF RRILNP+SNLCYGEGGAGTWSDGKLTTR
Sbjct:  308 GGGPSVVIVGAGPAGLFAALELVEVGMKPIIVERGMPVERRGREIGALFHRRILNPDSNLCYGEGGAGTWSDGKLTTR 385          
BLAST of mRNA_F-distichus_contig98841.19324.1 vs. uniprot
Match: D7FIX4_ECTSI (FAD_binding_3 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIX4_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 3.690e-36
Identity = 67/73 (91.78%), Postives = 70/73 (95.89%), Query Frame = 1
Query:   25 VAVVGAGPAGLFAALELVEAGIKPVIVERGMPVERRGREIGALFARRILNPESNLCYGEGGAGTWSDGKLTTR 243
            V VVGAGPAGLFAALELVE G+KP+IVERGMPVERRGREIGALF RRILNP+SNLCYGEGGAGTWSDGKLTTR
Sbjct:  187 VVVVGAGPAGLFAALELVEVGMKPIIVERGMPVERRGREIGALFHRRILNPDSNLCYGEGGAGTWSDGKLTTR 259          
BLAST of mRNA_F-distichus_contig98841.19324.1 vs. uniprot
Match: A0A7S0Z9U8_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0Z9U8_9CHLO)

HSP 1 Score: 120 bits (301), Expect = 2.750e-31
Identity = 59/73 (80.82%), Postives = 63/73 (86.30%), Query Frame = 1
Query:   25 VAVVGAGPAGLFAALELVEAGIKPVIVERGMPVERRGREIGALFARRILNPESNLCYGEGGAGTWSDGKLTTR 243
            V V+G GPAGLFAAL L EAGIK  +VERG PVE RG++IGALFARR LN ESNLCYGEGGAGTWSDGKLTTR
Sbjct:  171 VVVIGLGPAGLFAALALAEAGIKVTVVERGQPVETRGKDIGALFARRQLNAESNLCYGEGGAGTWSDGKLTTR 243          
BLAST of mRNA_F-distichus_contig98841.19324.1 vs. uniprot
Match: A0A7S2CK25_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CK25_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.000e-30
Identity = 56/71 (78.87%), Postives = 60/71 (84.51%), Query Frame = 1
Query:   31 VVGAGPAGLFAALELVEAGIKPVIVERGMPVERRGREIGALFARRILNPESNLCYGEGGAGTWSDGKLTTR 243
            VVGAGPAGLFAALEL EAG+   IVERG PV  RGR IGAL  RR+L+ +SNLCYGEGGAGTWSDGKLTTR
Sbjct:    1 VVGAGPAGLFAALELAEAGVPVTIVERGQPVGLRGRNIGALMRRRVLDKDSNLCYGEGGAGTWSDGKLTTR 71          
BLAST of mRNA_F-distichus_contig98841.19324.1 vs. uniprot
Match: A0A836CLD3_9STRA (DAO domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLD3_9STRA)

HSP 1 Score: 122 bits (306), Expect = 1.290e-30
Identity = 62/78 (79.49%), Postives = 68/78 (87.18%), Query Frame = 1
Query:   13 AKPSVAVVGAGPAGLFAALELVEAGIKPVIVERGMPVERRGREIGALFARRILNPES-NLCYGEGGAGTWSDGKLTTR 243
            A P V VVG+GPAGLFAAL L +AG KP+I+ERG PVE RGR+IGALFAR+ILN ES NLCYGEGGAGTWSDGKLTTR
Sbjct:  119 AAPRVLVVGSGPAGLFAALALAQAGYKPIILERGQPVEVRGRDIGALFARKILNGESSNLCYGEGGAGTWSDGKLTTR 196          
BLAST of mRNA_F-distichus_contig98841.19324.1 vs. uniprot
Match: A0A7S0T6K1_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0T6K1_9CHLO)

HSP 1 Score: 117 bits (294), Expect = 1.960e-30
Identity = 56/73 (76.71%), Postives = 64/73 (87.67%), Query Frame = 1
Query:   25 VAVVGAGPAGLFAALELVEAGIKPVIVERGMPVERRGREIGALFARRILNPESNLCYGEGGAGTWSDGKLTTR 243
            V +VG GPAGLFAAL LVEAG+   ++ERG PVE RGR+IGALFARR+L+ +SNLCYGEGGAGTWSDGKLTTR
Sbjct:  191 VLIVGLGPAGLFAALALVEAGVPVTVIERGQPVEGRGRDIGALFARRLLDGDSNLCYGEGGAGTWSDGKLTTR 263          
BLAST of mRNA_F-distichus_contig98841.19324.1 vs. uniprot
Match: A0A836BX60_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BX60_9CHLO)

HSP 1 Score: 121 bits (304), Expect = 2.510e-30
Identity = 58/73 (79.45%), Postives = 65/73 (89.04%), Query Frame = 1
Query:   25 VAVVGAGPAGLFAALELVEAGIKPVIVERGMPVERRGREIGALFARRILNPESNLCYGEGGAGTWSDGKLTTR 243
            V VVG+GPAGLFAAL L EAG + V++ERG PVE+RGR+IGAL  RRILNP+SNLCYGEGGAGTWSDGKLTTR
Sbjct:  609 VVVVGSGPAGLFAALSLAEAGARVVLLERGQPVEQRGRDIGALMVRRILNPDSNLCYGEGGAGTWSDGKLTTR 681          
BLAST of mRNA_F-distichus_contig98841.19324.1 vs. uniprot
Match: A0A2P6TXJ9_CHLSO (Proton phosphate symporter n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TXJ9_CHLSO)

HSP 1 Score: 120 bits (302), Expect = 4.660e-30
Identity = 58/73 (79.45%), Postives = 65/73 (89.04%), Query Frame = 1
Query:   25 VAVVGAGPAGLFAALELVEAGIKPVIVERGMPVERRGREIGALFARRILNPESNLCYGEGGAGTWSDGKLTTR 243
            V VVG GPAGLFAALEL +AGIK V+++RG PVE RG++IGALF RR +NPESNLCYGEGGAGTWSDGKLTTR
Sbjct:  620 VVVVGCGPAGLFAALELAQAGIKVVLLDRGQPVEVRGKDIGALFVRRHVNPESNLCYGEGGAGTWSDGKLTTR 692          
BLAST of mRNA_F-distichus_contig98841.19324.1 vs. uniprot
Match: A0A7S3T173_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3T173_EMIHU)

HSP 1 Score: 113 bits (283), Expect = 5.940e-30
Identity = 53/73 (72.60%), Postives = 60/73 (82.19%), Query Frame = 1
Query:   25 VAVVGAGPAGLFAALELVEAGIKPVIVERGMPVERRGREIGALFARRILNPESNLCYGEGGAGTWSDGKLTTR 243
            V V+GAGP GLFAAL L  AG++  + ERG PVE+RGR IGAL  RR+L+PESN CYGEGGAGTWSDGKLTTR
Sbjct:   19 VVVIGAGPCGLFAALTLARAGVRVTLCERGKPVEQRGRSIGALIKRRVLDPESNFCYGEGGAGTWSDGKLTTR 91          
BLAST of mRNA_F-distichus_contig98841.19324.1 vs. uniprot
Match: C1MRW4_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MRW4_MICPC)

HSP 1 Score: 120 bits (301), Expect = 6.230e-30
Identity = 59/75 (78.67%), Postives = 63/75 (84.00%), Query Frame = 1
Query:   19 PSVAVVGAGPAGLFAALELVEAGIKPVIVERGMPVERRGREIGALFARRILNPESNLCYGEGGAGTWSDGKLTTR 243
            P V VVG GPAGLFAAL L E G   V++ERG PVERRGR+IGALFARR LN +SNLCYGEGGAGTWSDGKLTTR
Sbjct:  278 PPVVVVGLGPAGLFAALALAETGANVVVLERGQPVERRGRDIGALFARRRLNEDSNLCYGEGGAGTWSDGKLTTR 352          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig98841.19324.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JX72_9PHAE7.740e-3888.46FAD_binding_3 domain-containing protein n=1 Tax=Ec... [more]
D7FIX4_ECTSI3.690e-3691.78FAD_binding_3 domain-containing protein n=1 Tax=Ec... [more]
A0A7S0Z9U8_9CHLO2.750e-3180.82Hypothetical protein (Fragment) n=1 Tax=Ostreococc... [more]
A0A7S2CK25_9STRA1.000e-3078.87Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A836CLD3_9STRA1.290e-3079.49DAO domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S0T6K1_9CHLO1.960e-3076.71Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
A0A836BX60_9CHLO2.510e-3079.45Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A2P6TXJ9_CHLSO4.660e-3079.45Proton phosphate symporter n=1 Tax=Chlorella sorok... [more]
A0A7S3T173_EMIHU5.940e-3072.60Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
C1MRW4_MICPC6.230e-3078.67Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig98841contigF-distichus_contig98841:616..1760 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score138.3
Seed ortholog evalue1.6e-30
Seed eggNOG ortholog2880.D7FIX4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.5-formyltetrahydrofolate cyclo-ligase activity
EggNOG OGs2QSVD@2759,COG2509@1
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size243
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931169.3063695-CDS-F-distichus_contig98841:615..7311622931169.3063695-CDS-F-distichus_contig98841:615..731Fucus distichus monoicousCDSF-distichus_contig98841 616..731 +
1690886188.5338466-CDS-F-distichus_contig98841:615..7311690886188.5338466-CDS-F-distichus_contig98841:615..731Fucus distichus monoicousCDSF-distichus_contig98841 616..731 +
1622931169.3241084-CDS-F-distichus_contig98841:1633..17601622931169.3241084-CDS-F-distichus_contig98841:1633..1760Fucus distichus monoicousCDSF-distichus_contig98841 1634..1760 +
1690886188.5457382-CDS-F-distichus_contig98841:1633..17601690886188.5457382-CDS-F-distichus_contig98841:1633..1760Fucus distichus monoicousCDSF-distichus_contig98841 1634..1760 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig98841.19324.1prot_F-distichus_contig98841.19324.1Fucus distichus monoicouspolypeptideF-distichus_contig98841 616..1760 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig98841.19324.1

>prot_F-distichus_contig98841.19324.1 ID=prot_F-distichus_contig98841.19324.1|Name=mRNA_F-distichus_contig98841.19324.1|organism=Fucus distichus monoicous|type=polypeptide|length=81bp
ALPGAKPSVAVVGAGPAGLFAALELVEAGIKPVIVERGMPVERRGREIGA
LFARRILNPESNLCYGEGGAGTWSDGKLTTR
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mRNA from alignment at F-distichus_contig98841:616..1760+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig98841.19324.1 ID=mRNA_F-distichus_contig98841.19324.1|Name=mRNA_F-distichus_contig98841.19324.1|organism=Fucus distichus monoicous|type=mRNA|length=1145bp|location=Sequence derived from alignment at F-distichus_contig98841:616..1760+ (Fucus distichus monoicous)
GCGCTCCCTGGTGCGAAGCCGTCCGTAGCGGTCGTCGGCGCCGGGCCGGC CGGGCTGTTTGCGGCGCTGGAGCTCGTCGAGGCTGGGATCAAGCCGGTCA TCGTGGAGCGGGGGATGTGAGTGGAAATGAGCTTTGCAGGGGTTCGTTGG CGGGGATCTAACAGAACAACAGTGATGTGGTGTGCTGGTACTTCAGTACA CTCTTTTTGTGAACCGTGATGGTAGCCTCTGGTAGTCGGTTTCAAGTTTT GTACGAATTTTTGACAGAAACGTACATCCCGGCGGGTACTGAAAGGGTTG TATGGTAACTTCTTGATAAATACGTAGTTAAAAATTGAAGACTCGGTTGT AAGTTTTGTTGTATGAGTTTTCGTACAGAACAAACTGCTTGTACTATGTA CGAATATAGAGTACATTGTGCCGTACAATCTACACACCGCTTCAACCATT TTTTGTTTTTGTTTTGGTGTCTGCTTTTCTTTTTCTTTTCGTGTTTTTAA GTATTGATTAACATATATCATATATCATACGTAAATACATGTAAACATGT ATATATGTACGTAGTCTCGTTGCGAACAAGTAGTTTTGTACTGTGCGACG GGGTTGTCGTCGCAAGGTATATTTTTACTAAGAGCAGCATCGGTTCACAA AAAGACACGCTGAGAGCAGCAGCGGCTTCACCAACTGCCACCACCACTAC TGCCGCCACTTACCACTATTAAAACTTAATACAATACGTGGCTAGTCTAT TGATATAGCTATTGAATAGAGCTGTTGTTGCTACTATGACCTATGACAAC TTATCTCAGCACCTTATCCCACGCTGCCGACCGGTCTTGCCACGAGTGCT ATATTATACCGCGTCGTGCTGTCTGCGTTACGTTGCATTATCCAAGCTTT TATGAATCAGGGCACTGGATTTCACTCAAAATTCTGGTTGTTTATGGCCA GGAGCACCAATCCCCAACCCATCCAGTCCTACCAACCCCTCCACCACAAC AAACAAATGCCTTGCCAGGCCGGTGGAGAGGAGGGGCCGAGAAATTGGAG CGCTGTTCGCGAGGCGCATACTTAACCCAGAGAGCAACCTCTGCTACGGG GAGGGCGGCGCGGGAACATGGAGCGACGGAAAACTTACCACCAGG
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Coding sequence (CDS) from alignment at F-distichus_contig98841:616..1760+

>mRNA_F-distichus_contig98841.19324.1 ID=mRNA_F-distichus_contig98841.19324.1|Name=mRNA_F-distichus_contig98841.19324.1|organism=Fucus distichus monoicous|type=CDS|length=486bp|location=Sequence derived from alignment at F-distichus_contig98841:616..1760+ (Fucus distichus monoicous)
GCGCTCCCTGGTGCGAAGCCGTCCGTAGCGGTCGTCGGCGCCGGGCCGGC
CGGGCTGTTTGCGGCGCTGGAGCTCGTCGAGGCTGGGATCAAGCCGGTCA
TCGTGGAGCGGGGGATGCGCTCCCTGGTGCGAAGCCGTCCGTAGCGGTCG
TCGGCGCCGGGCCGGCCGGGCTGTTTGCGGCGCTGGAGCTCGTCGAGGCT
GGGATCAAGCCGGTCATCGTGGAGCGGGGGATGCCGGTGGAGAGGAGGGG
CCGAGAAATTGGAGCGCTGTTCGCGAGGCGCATACTTAACCCAGAGAGCA
ACCTCTGCTACGGGGAGGGCGGCGCGGGAACATGGAGCGACGGAAAACTT
ACCACCAGGGCCGGTGGAGAGGAGGGGCCGAGAAATTGGAGCGCTGTTCG
CGAGGCGCATACTTAACCCAGAGAGCAACCTCTGCTACGGGGAGGGCGGC
GCGGGAACATGGAGCGACGGAAAACTTACCACCAGG
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