mRNA_F-distichus_contig98816.19322.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig98816.19322.1
Unique NamemRNA_F-distichus_contig98816.19322.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig98816.19322.1 vs. uniprot
Match: A0A6H5JA50_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA50_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 9.820e-18
Identity = 52/103 (50.49%), Postives = 61/103 (59.22%), Query Frame = 3 
Query:  291 RETFYELVDEAFGTTEWLRAVQGRGPGFDPCERMAVFLYRMGHSARARETAVLFGMSVGAVHYSTTSVAKRIRDVLNQRYVCWPGRTERRRISREWEVERDLR 599
            + TF  LV   FGTT   R V   GP  DPCER+AVFL+R+GH +  R TA  F M+ GAV   T SVA+RIR  L   YV WP   E+  IS  WE E+ LR
Sbjct:   12 KSTFRRLVHALFGTTYVFR-VNNTGPYIDPCERVAVFLFRVGHGSGVRATASHFNMAEGAVVNWTMSVARRIRKRLLCEYVRWPSPEEQSEISTAWEKEKSLR 113
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BLAST of mRNA_F-distichus_contig98816.19322.1 vs. uniprot
Match: A0A6H5JSG7_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSG7_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.120e-13
Identity = 38/80 (47.50%), Postives = 52/80 (65.00%), Query Frame = 3 
Query:  360 RGPGFDPCERMAVFLYRMGHSARARETAVLFGMSVGAVHYSTTSVAKRIRDVLNQRYVCWPGRTERRRISREWEVERDLR 599
            RGP FDPCER+AVF++R+G  +  R+TA+ FG+S G V   T  VA+R+   L    V WP   E+R +S  WE+E+ LR
Sbjct:    7 RGPPFDPCERVAVFMWRLGGDSTVRQTALQFGLSDGTVSQVTLEVARRVDKYLRDECVWWPSPEEQRDMSAAWELEKHLR 86
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig98816.19322.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JA50_9PHAE9.820e-1850.49DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JSG7_9PHAE1.120e-1347.50DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig98816contigF-distichus_contig98816:170..1248 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size880
Cds size591
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig98816.19322.1prot_F-distichus_contig98816.19322.1Fucus distichus monoicouspolypeptideF-distichus_contig98816 448..1237 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931169.150696-UTR-F-distichus_contig98816:169..4471622931169.150696-UTR-F-distichus_contig98816:169..447Fucus distichus monoicousUTRF-distichus_contig98816 170..447 -
1690886188.4642136-UTR-F-distichus_contig98816:169..4471690886188.4642136-UTR-F-distichus_contig98816:169..447Fucus distichus monoicousUTRF-distichus_contig98816 170..447 -
1622931169.2070978-UTR-F-distichus_contig98816:1237..12481622931169.2070978-UTR-F-distichus_contig98816:1237..1248Fucus distichus monoicousUTRF-distichus_contig98816 1238..1248 -
1690886188.5019677-UTR-F-distichus_contig98816:1237..12481690886188.5019677-UTR-F-distichus_contig98816:1237..1248Fucus distichus monoicousUTRF-distichus_contig98816 1238..1248 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931169.1692994-CDS-F-distichus_contig98816:447..7601622931169.1692994-CDS-F-distichus_contig98816:447..760Fucus distichus monoicousCDSF-distichus_contig98816 448..760 -
1690886188.4764037-CDS-F-distichus_contig98816:447..7601690886188.4764037-CDS-F-distichus_contig98816:447..760Fucus distichus monoicousCDSF-distichus_contig98816 448..760 -
1622931169.18809-CDS-F-distichus_contig98816:959..12371622931169.18809-CDS-F-distichus_contig98816:959..1237Fucus distichus monoicousCDSF-distichus_contig98816 960..1237 -
1690886188.4917805-CDS-F-distichus_contig98816:959..12371690886188.4917805-CDS-F-distichus_contig98816:959..1237Fucus distichus monoicousCDSF-distichus_contig98816 960..1237 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig98816.19322.1

>prot_F-distichus_contig98816.19322.1 ID=prot_F-distichus_contig98816.19322.1|Name=mRNA_F-distichus_contig98816.19322.1|organism=Fucus distichus monoicous|type=polypeptide|length=197bp
MDELSFPPMAHFLPALRAAGLIARKKRDDEEDDKPANEDFIKVLGVLDPH
DMADLIHGTTRDHNKDVPHPRRFWAREGLHMGSRTFSTMFRRMRETFYEL
VDEAFGTTEWLRAVQGRGPGFDPCERMAVFLYRMGHSARARETAVLFGMS
VGAVHYSTTSVAKRIRDVLNQRYVCWPGRTERRRISREWEVERDLR*
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mRNA from alignment at F-distichus_contig98816:170..1248-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig98816.19322.1 ID=mRNA_F-distichus_contig98816.19322.1|Name=mRNA_F-distichus_contig98816.19322.1|organism=Fucus distichus monoicous|type=mRNA|length=1079bp|location=Sequence derived from alignment at F-distichus_contig98816:170..1248- (Fucus distichus monoicous)
AAGGAGCGGCGATGGACGAGTTATCTTTCCCTCCTATGGCGCATTTTTTG
CCTGCATTACGGGCGGCAGGTCTGATTGCTCGCAAAAAACGAGACGACGA
AGAAGATGACAAGCCCGCCAATGAAGACTTCATCAAAGTGTTAGGGGTGC
TCGACCCGCATGACATGGCAGACCTAATTCATGGTACCACCCGAGACCAC
AACAAGGATGTACCACACCCACGGCGGTTTTGGGCACGTGAAGGTCTACA
CATGGGTTCTCGTACATTTTCGACAATGTTCCGTCGCATGTGAGGATATA
CTAAAACAGGAACATTGACAGGGCATGCGTTGCGAAGTAGACTGATGGAA
GTACGCAGGTCCCACATGCTCTAAGCTCTAGGCAACTGGGTTTTTGGCAA
CGCTACATCCGCGTGGCGTTTGTGTTCTGAACTAAGGCGCGATGCTTTCT
AAATTCCCATTCCCACGTGATGTATGCACCGCGAACAGGCGTGAGACGTT
TTACGAGCTAGTCGATGAAGCGTTCGGGACAACAGAGTGGCTGCGAGCTG
TACAAGGGCGCGGTCCGGGTTTTGACCCATGTGAACGCATGGCCGTATTC
CTGTATCGGATGGGACACTCCGCAAGGGCGCGTGAAACAGCGGTTTTATT
TGGCATGTCCGTGGGCGCCGTCCACTACTCTACGACATCAGTTGCGAAGC
GCATAAGAGATGTGTTGAATCAACGATATGTCTGCTGGCCTGGTCGGACT
GAGCGGCGACGCATCTCGCGAGAGTGGGAGGTGGAAAGGGACCTAAGGTA
AGCTTGTATACAATCGAGTACGTATATTGCAAGAAGAGCTCCACTTCTTA
AGTGAAGCAGGTTATTGGCGTCACATTATGAGGGAAACGAACGAAGTAGG
TAGCCGCAAAGTGTCGCACCGAAATAACTTCAATGGGTAGAAATATTGAC
AGAATAATGTGTATGTCCATAATATAAAGAGGCGGCTATTACAAGAAGCA
GTCGACCGATTCATGGCTTGATTCGAGCAAGTTCCCTGCTAGACGGGAGT
TTACACATCTTATCTTCGTGTTTCTTCAG
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Coding sequence (CDS) from alignment at F-distichus_contig98816:170..1248-

>mRNA_F-distichus_contig98816.19322.1 ID=mRNA_F-distichus_contig98816.19322.1|Name=mRNA_F-distichus_contig98816.19322.1|organism=Fucus distichus monoicous|type=CDS|length=1182bp|location=Sequence derived from alignment at F-distichus_contig98816:170..1248- (Fucus distichus monoicous)
ATGGACGAGTTATCTTTCCCTCCTATGGCGCATTTTTTGCCTGCATTACG
GGCGGCAGGTCTGATTGCTCGCAAAAAACGAGACGACGAAGAAGATGACA
AGCCCGCCAATGAAGACTTCATCAAAGTGTTAGGGGTGCTCGACCCGCAT
GACATGGCAGACCTAATTCATGGTACCACCCGAGACCACAACAAGGATGT
ACCACACCCACGGCGGTTTTGGGCACGTGAAGGTCTACACATGGGTTCTC
GTACATTTTCGACAATGTTCCGTCGCATATGGACGAGTTATCTTTCCCTC
CTATGGCGCATTTTTTGCCTGCATTACGGGCGGCAGGTCTGATTGCTCGC
AAAAAACGAGACGACGAAGAAGATGACAAGCCCGCCAATGAAGACTTCAT
CAAAGTGTTAGGGGTGCTCGACCCGCATGACATGGCAGACCTAATTCATG
GTACCACCCGAGACCACAACAAGGATGTACCACACCCACGGCGGTTTTGG
GCACGTGAAGGTCTACACATGGGTTCTCGTACATTTTCGACAATGTTCCG
TCGCATGCGTGAGACGTTTTACGAGCTAGTCGATGAAGCGTTCGGGACAA
CAGAGTGGCTGCGAGCTGTACAAGGGCGCGGTCCGGGTTTTGACCCATGT
GAACGCATGGCCGTATTCCTGTATCGGATGGGACACTCCGCAAGGGCGCG
TGAAACAGCGGTTTTATTTGGCATGTCCGTGGGCGCCGTCCACTACTCTA
CGACATCAGTTGCGAAGCGCATAAGAGATGTGTTGAATCAACGATATGTC
TGCTGGCCTGGTCGGACTGAGCGGCGACGCATCTCGCGAGAGTGGGAGGT
GGAAAGGGACCTAAGGTAAGCGTGAGACGTTTTACGAGCTAGTCGATGAA
GCGTTCGGGACAACAGAGTGGCTGCGAGCTGTACAAGGGCGCGGTCCGGG
TTTTGACCCATGTGAACGCATGGCCGTATTCCTGTATCGGATGGGACACT
CCGCAAGGGCGCGTGAAACAGCGGTTTTATTTGGCATGTCCGTGGGCGCC
GTCCACTACTCTACGACATCAGTTGCGAAGCGCATAAGAGATGTGTTGAA
TCAACGATATGTCTGCTGGCCTGGTCGGACTGAGCGGCGACGCATCTCGC
GAGAGTGGGAGGTGGAAAGGGACCTAAGGTAA
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