mRNA_F-distichus_contig98776.19318.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig98776.19318.1
Unique NamemRNA_F-distichus_contig98776.19318.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig98776.19318.1 vs. uniprot
Match: D8LQE7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQE7_ECTSI)

HSP 1 Score: 211 bits (536), Expect = 3.070e-66
Identity = 105/162 (64.81%), Postives = 126/162 (77.78%), Query Frame = 2 
Query:   47 MASSRGQRLTVQQRKKASRALVRARRVRESSIATVLRGETWPGYEGPMRAGLRELDEMDATKKRGTYASKPLVSPSLDEEEEEDDRILSARDAWAEEVEGIWNEILQADSLATKPRIVLPGFPIEVVKVKIARDYGHQKIFWDLTEASRHPPESILRQLREV 532
            MAS+R +RLTV Q+KK SRALVRARR+R +S+ATVL  E W GYE  MR GLRELD+    K+RGTYASKPLVS +   ++ +D R+LS RDAWAE +EG+WNEILQAD+  T+PRI LPGFPI VV VKIARDYGH KIFW+L++    PP S+LRQL E 
Sbjct:    1 MASNRSERLTVHQKKKMSRALVRARRLRNASMATVLGEEEWSGYEATMRQGLRELDDTTEVKRRGTYASKPLVSAAPQADKNDDGRLLSERDAWAERMEGVWNEILQADAKGTRPRITLPGFPIHVVMVKIARDYGHHKIFWELSDVDTRPPNSVLRQLYEA 162
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig98776.19318.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQE7_ECTSI3.070e-6664.81Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig98776contigF-distichus_contig98776:386..1967 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionRibosome-binding factor A
Ec32 orthologEc-10_005360.1
Exons3
Model size541
Cds size516
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig98776.19318.1prot_F-distichus_contig98776.19318.1Fucus distichus monoicouspolypeptideF-distichus_contig98776 411..1967 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931168.4793096-UTR-F-distichus_contig98776:385..4101622931168.4793096-UTR-F-distichus_contig98776:385..410Fucus distichus monoicousUTRF-distichus_contig98776 386..410 +
1690886188.1368124-UTR-F-distichus_contig98776:385..4101690886188.1368124-UTR-F-distichus_contig98776:385..410Fucus distichus monoicousUTRF-distichus_contig98776 386..410 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931168.4986515-CDS-F-distichus_contig98776:410..6471622931168.4986515-CDS-F-distichus_contig98776:410..647Fucus distichus monoicousCDSF-distichus_contig98776 411..647 +
1690886188.1479604-CDS-F-distichus_contig98776:410..6471690886188.1479604-CDS-F-distichus_contig98776:410..647Fucus distichus monoicousCDSF-distichus_contig98776 411..647 +
1622931168.5391397-CDS-F-distichus_contig98776:1064..12231622931168.5391397-CDS-F-distichus_contig98776:1064..1223Fucus distichus monoicousCDSF-distichus_contig98776 1065..1223 +
1690886188.1701639-CDS-F-distichus_contig98776:1064..12231690886188.1701639-CDS-F-distichus_contig98776:1064..1223Fucus distichus monoicousCDSF-distichus_contig98776 1065..1223 +
1622931168.5575054-CDS-F-distichus_contig98776:1847..19671622931168.5575054-CDS-F-distichus_contig98776:1847..1967Fucus distichus monoicousCDSF-distichus_contig98776 1848..1967 +
1690886188.1813455-CDS-F-distichus_contig98776:1847..19671690886188.1813455-CDS-F-distichus_contig98776:1847..1967Fucus distichus monoicousCDSF-distichus_contig98776 1848..1967 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig98776.19318.1

>prot_F-distichus_contig98776.19318.1 ID=prot_F-distichus_contig98776.19318.1|Name=mRNA_F-distichus_contig98776.19318.1|organism=Fucus distichus monoicous|type=polypeptide|length=172bp
MVQQLRSMASSRGQRLTVQQRKKASRALVRARRVRESSIATVLRGETWPG
YEGPMRAGLRELDEMDATKKRGTYASKPLVSPSLDEEEEEDDRILSARDA
WAEEVEGIWNEILQADSLATKPRIVLPGFPIEVVKVKIARDYGHQKIFWD
LTEASRHPPESILRQLREVLPQ
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mRNA from alignment at F-distichus_contig98776:386..1967+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig98776.19318.1 ID=mRNA_F-distichus_contig98776.19318.1|Name=mRNA_F-distichus_contig98776.19318.1|organism=Fucus distichus monoicous|type=mRNA|length=1582bp|location=Sequence derived from alignment at F-distichus_contig98776:386..1967+ (Fucus distichus monoicous)
AGTTGCAACCTTGCGCGACCGATCAATGGTGCAGCAACTGCGATCGATGG
CGAGCTCTCGTGGGCAACGCTTGACCGTCCAGCAAAGGAAGAAGGCTTCG
AGGGCGTTGGTCAGGGCACGGCGGGTCCGAGAATCTTCCATAGCGACGGT
TCTGCGTGGCGAAACTTGGCCAGGGTACGAGGGGCCGATGCGAGCGGGGC
TGAGGGAGCTGGACGAGATGGACGCGACAAAGAAGAGGGGGACGTATGCC
AGCAAGCCCCTGGTAAGCAGGGCCCGTTCGTTTTCCCGTTCTGGATATGC
CGGCGCCAGATGAGCACGGCTGTTGTCGTGTGACGTCCATGTGCACGCCT
GGAATGGCAGTTCCTGTTTGTAGGAGAAATGTAAGCTGGTGGCTTGCGGC
ATGCCAGTACAACGTTCGCGAGGTAATGGAAGATTGCACCCTGCTTTATT
CCGCGCGGGCACGCGTAACATGCTTAACCGTGACAGGAGATAGCCTCAGG
CTCAACGGCTCCTCCGTCACGAGCAGTTCGCTCCCCCCCAACCCACCACG
AATGGAGTGCTTGCTCTATCTTTATTTCAATTGTACTGCTTCGTGACAAA
TCAAGTTTTTTTTCAGGAGCTACCATCCCTGCTGTTTTCACGCTTTCTCG
ATCGATCGCCTGTGACTTCCAATGCGAAGGTGTCGCCGAGCCTCGACGAA
GAGGAGGAAGAAGATGATCGTATACTGTCGGCGAGAGACGCGTGGGCCGA
GGAAGTAGAAGGCATCTGGAACGAAATCCTGCAGGCCGACTCATTGGCTA
CAAAGCCACGAATAGTGCTCCCCGGGTTTCCTATAGAGGTAGAGGTCATT
ACCACTTCGAAGACAAAGTAGTCCTTCGAGTCCGTCGTATCGCAACCCGA
AAGAGCGAAACAGTCTCAAGTCAACCCATCTCAATGAAATGAAGTTCACT
TCGTCAACTCTATAATTAGGAGCCTTAGTTCGGGGTTAAGGCAGAATCTT
GAAGAAACCACACGTTTCTTTATTCCGAGTGCACTGCCATCTCATTGGTT
GAACTAAGTACGACAGCTGAAAGTTGCCAAAAATCGTTTTGCGAAGACGG
AAGTGGAAGTGGAAGCTGCTGTGTTGTGCTGTGATCTCGATCCACTGGAC
GAGACAGCCCTCACCTGATGTATTCGGTATCACCGCTGTATTCAATTGGA
CAACAGAATTGCCCCCTCCAATCAATCGATGACCGTCGTTAACCCCACGA
AAACATGTCGGATCTGGCATGGCTCATTTAGGACCCCGTGTCCCTCCTTC
TGGCTTTTCTTCCCCGCCATTCCCTCTGGAAGACTCTCAGCGGACCGCTG
AGTGCGTAAAACATTGAACTGAGGCCACCCTGTATGCCACCGCCTCTCAT
ACTTCGTGGTCGCTATCCGCCTCGATGTTCCATGGGGGCATGGCGCGCCT
TTTCTAACCCAGGTGGTCAAGGTCAAGATTGCAAGAGATTATGGGCACCA
GAAAATATTTTGGGATCTGACGGAAGCGAGCAGGCACCCACCCGAATCTA
TCCTGCGCCAGCTACGTGAGGTATTGCCGCAG
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Coding sequence (CDS) from alignment at F-distichus_contig98776:386..1967+

>mRNA_F-distichus_contig98776.19318.1 ID=mRNA_F-distichus_contig98776.19318.1|Name=mRNA_F-distichus_contig98776.19318.1|organism=Fucus distichus monoicous|type=CDS|length=1032bp|location=Sequence derived from alignment at F-distichus_contig98776:386..1967+ (Fucus distichus monoicous)
ATGGTGCAGCAACTGCGATCGATGGCGAGCTCTCGTGGGCAACGCTTGAC
CGTCCAGCAAAGGAAGAAGGCTTCGAGGGCGTTGGTCAGGGCACGGCGGG
TCCGAGAATCTTCCATAGCGACGGTTCTGCGTGGCGAAACTTGGCCAGGG
TACGAGGGGCCGATGCGAGCGGGGCTGAGGGAGCTGGACGAGATGGACGC
GACAAAGAAGAGGGGGACGTATGCCAGCAAGCCCCTGATGGTGCAGCAAC
TGCGATCGATGGCGAGCTCTCGTGGGCAACGCTTGACCGTCCAGCAAAGG
AAGAAGGCTTCGAGGGCGTTGGTCAGGGCACGGCGGGTCCGAGAATCTTC
CATAGCGACGGTTCTGCGTGGCGAAACTTGGCCAGGGTACGAGGGGCCGA
TGCGAGCGGGGCTGAGGGAGCTGGACGAGATGGACGCGACAAAGAAGAGG
GGGACGTATGCCAGCAAGCCCCTGGTGTCGCCGAGCCTCGACGAAGAGGA
GGAAGAAGATGATCGTATACTGTCGGCGAGAGACGCGTGGGCCGAGGAAG
TAGAAGGCATCTGGAACGAAATCCTGCAGGCCGACTCATTGGCTACAAAG
CCACGAATAGTGCTCCCCGGGTTTCCTATAGAGGTGTCGCCGAGCCTCGA
CGAAGAGGAGGAAGAAGATGATCGTATACTGTCGGCGAGAGACGCGTGGG
CCGAGGAAGTAGAAGGCATCTGGAACGAAATCCTGCAGGCCGACTCATTG
GCTACAAAGCCACGAATAGTGCTCCCCGGGTTTCCTATAGAGGTGGTCAA
GGTCAAGATTGCAAGAGATTATGGGCACCAGAAAATATTTTGGGATCTGA
CGGAAGCGAGCAGGCACCCACCCGAATCTATCCTGCGCCAGCTACGTGAG
GTATTGCCGCAGGTGGTCAAGGTCAAGATTGCAAGAGATTATGGGCACCA
GAAAATATTTTGGGATCTGACGGAAGCGAGCAGGCACCCACCCGAATCTA
TCCTGCGCCAGCTACGTGAGGTATTGCCGCAG
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