mRNA_F-distichus_contig9876.19317.1 (mRNA) Fucus distichus monoicous
|
Overview
Homology
BLAST of mRNA_F-distichus_contig9876.19317.1 vs. uniprot
Match: D7FNX8_ECTSI (SH2 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNX8_ECTSI) HSP 1 Score: 117 bits (294), Expect = 2.120e-23 Identity = 114/377 (30.24%), Postives = 162/377 (42.97%), Query Frame = 2
Query: 173 ERAKKIANDAGLQDCGLKSVWVEATKRAKAGGRRVSG---DDDDVY--------------YGSVPWRYLSRGLQLFL-GNLQTTGGYDMRFVNSLQSMGITGSGQNSNSERCASSEASWYARSDGLGHGYQSSFRPRLLDRNELSFVLKILRS----CRPDKAGHRRGTSSRGSDVIGECADWSGYAEVHQGEEGENDSIQPEYDNED-------DIFSLEAFVKFCRWWNPVTTILWRISNEWASVDPVKVQGFMGRRESERRLKEKSLPGVFLLRFSESSPGRLVLTHT--------RKASQDVSSGQARKNGSKSCPVSINHTYVTVVGRAGPWTLHYGKGDEGISYSSLRKLVNSRGDLLTLYPGSAKGNAFE 1192
+RA A AGL D G + VWV+AT A G G D+ + Y VPW YL RGL L G L +D V G G +AS G G+G ++ + R ++ EL+FV +L++ R + R+ +SRG ++G V G G D+ D+ SL+AFV+F WW P+ L + N+WAS +P +V GF+ R +ER+L E+ G FLLRFSES PG LV++ T R +S S+ ++R C + H V V R G W + + Y SL LV + + LYP K +AF+
Sbjct: 595 KRAWDTARTAGLMDRGCRLVWVKATTNALLNGWTYDGGGGSDNGGFGWPAEGAGAGGVTNYDCVPWDYLRRGLMQHLCGKLTIPSSHDE--VVDEGPYGWRG-------------DASSVGVGVGNGYGAVNTPQVRWMNEEELAFVRGVLKAKQEKVRLKQEKLRQQRASRG---------YAGTELVSIGSSGAADAASGRXXXXXXXXXXXXDVISLDAFVEFSLWWAPLMPTLSLLRNDWASTNPTRVHGFISRIAAERQLLERER-GTFLLRFSESQPGELVVSFTEHVTQAAPRASSMLTSAPRSRPRSQSMC---VKHCLVEV--RRGGWCYIEVEQGSKVPYPSLHDLVLACSSMQVLYPDVRKEDAFD 941
BLAST of mRNA_F-distichus_contig9876.19317.1 vs. uniprot
Match: A0A6H5KJ41_9PHAE (SH2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ41_9PHAE) HSP 1 Score: 103 bits (258), Expect = 2.090e-20 Identity = 81/250 (32.40%), Postives = 127/250 (50.80%), Query Frame = 2
Query: 488 DGLGHGYQSSFRPRLLDRNELSFVLKILRS----CRPDKAGHRRGTSSRG---SDVIGECADWSGYAEVHQGEEGENDSIQPEYDNEDDIFSLEAFVKFCRWWNPVTTILWRISNEWASVDPVKVQGFMGRRESERRLKEKSLPGVFLLRFSESSPGRLVLTHT--------RKASQDVSSGQARKNGSKSCPVSINHTYVTVVGRAGPWTLHYGKGDEGISYSSLRKLVNSRGDLLTLYPGSAKGNAFE 1192
+G G+G ++ + R ++ EL+FV +L++ R + R+ +SRG ++++ + SG A+ G +G N + ++ SLEAFV+F WW P+ T L + N+WAS +P +V GF+ R +ER+L E+ G FLLRFSES PG LV++ T R +S S+ +R C + H V V R G W + + Y SL LV + + LYP K +AF+
Sbjct: 39 EGNGYGAVNTPQVRWMNEEELAFVRGVLKTKQEKVRLKQEKLRQQLASRGYSGTELVSIGS--SGAADAAFGRDGGNGN--------GNVISLEAFVEFSLWWAPLMTTLSLLRNDWASTNPTRVHGFISRIAAERQLLERER-GTFLLRFSESQPGELVVSFTEHVTQAAPRDSSMLASAPCSRPRSQSMC---VKHCLVEV--RRGGWCYIEVEQGSKVPYPSLHDLVLACSSMEVLYPDVRKEDAFD 272
BLAST of mRNA_F-distichus_contig9876.19317.1 vs. uniprot
Match: D7FNY4_ECTSI (SH2 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY4_ECTSI) HSP 1 Score: 85.5 bits (210), Expect = 2.410e-13 Identity = 99/339 (29.20%), Postives = 135/339 (39.82%), Query Frame = 2
Query: 173 ERAKKIANDAGLQDCGLKSVWVEATKRAKAGGRRVSGDDDDVYYGSVPWRYLSRGLQLFLGNLQTTGGYDMRFVNSLQSMGITGSGQNSNSERCASSEASWYARSDGLGHGYQSSFRPRLLDRNELSFVLKILRSCRPDKAGHRRGTSSRGSDVIGECADWSGYAEVHQGEEGENDSIQPEYDNEDDIFSLEAFVKFCRWWNPVTTILWRISNEWASVDPVKVQGFMGRRESERRLKEKSLPGVFLLRFSESSPGRLVLTHTRKASQDVSSGQARKNGSKSCPVSINHTYVTVVGRAGPWTLHYGKGDEGISYSSLRKLVNSRGDLLTLYPGSAKGNAF 1189
+R + +A AG+ D G + VWV AT R G R+ DD W RG + LQ SL G+ N + S HG R+ D +L F+ ILR + A R G + EC + G D S+EAF KF +WW P+ + L I N+WA PV+V GFM R ++R L ++ G FLLRFSES G LV++ T+ + VS G+ +S+ H+ V V G + KG Y+SL V +L LYP K AF
Sbjct: 628 QRTRDLARAAGVVDRGCRLVWVTATSRMAGGCRQ-----DDXXXXXXXWS-SRRGKLVSWECLQE----------SLMEHLREGTKTTRNWDDPIISP-----------HG-------RVADTPQLEFIRGILRRGQEAVARARWGATGD------ECPEVDGGCRY-------------------DFISVEAFAKFSQWWAPLISTLGIIRNDWARTRPVRVHGFMSRLAAKRLLMQREC-GTFLLRFSESKMGALVISFTQPS---VSPGRRS--------LSVKHSLVEVKW-GGRCCIQAEKGGMRC-YASLHDFVRRIPELKKLYPDIPKEEAF 893
BLAST of mRNA_F-distichus_contig9876.19317.1 vs. uniprot
Match: A0A6H5JPT3_9PHAE (SH2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPT3_9PHAE) HSP 1 Score: 80.5 bits (197), Expect = 4.050e-12 Identity = 75/272 (27.57%), Postives = 107/272 (39.34%), Query Frame = 2
Query: 173 ERAKKIANDAGLQDCGLKSVWVEATKRAKAGGRRVSGDDDDVYYGSVPWRYLSRGLQLFLGNLQTTGGYDMRFVNSLQSMGITGSGQNSNSERCASSEASWYARSDGLGHGYQSSFR---------PRLLDRNELSFVLKILRSCRPDKAGHRRGTSSRGSDVIGECADWSGYAEVHQGEEGENDSIQPEYDNEDDIFSLEAFVKFCRWWNPVTTILWRISNEWASVDPVKVQGFMGRRESERRLKEKSLPGVFLLRFSESSPGRLVLTHTR 961
+RA +A AG+ D G + +WV AT R G R+ G G +G G +S S E + + L G +++ R++D +L F+ ILR + A R G + EC + G D DD S+EAF F +WW P+ L I N+WA+ PV+V GFM R S+R L ++ G FLLRFSES G LV++ T+
Sbjct: 131 QRAWDLARAAGVVDRGCRLIWVTATSRMARGCRQDDG-------------------------------------------GGSGGGWSSRRGEIVSWECLQESLMEHLREGTKTTRNWDDPIILPHGRVVDTPQLEFIRGILRRGQEAVAKARWGATGD------ECTEVGG-------------------DGRDDFVSVEAFANFSQWWAPLMATLGIIRNDWATTRPVRVHGFMSRVASKRLLMQREC-GTFLLRFSESRMGALVISFTQ 333
BLAST of mRNA_F-distichus_contig9876.19317.1 vs. uniprot
Match: D7FNY6_ECTSI (SH2 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY6_ECTSI) HSP 1 Score: 77.4 bits (189), Expect = 7.890e-11 Identity = 94/352 (26.70%), Postives = 130/352 (36.93%), Query Frame = 2
Query: 188 IANDAGLQDCGLKSVWVEATKRAKAGGRRVSGDDDDVYYGS------VPWRYLSRGLQLFLGNLQT----TGGYDMRFVNSLQSMGITGSGQNSNSE----------------RCASSEASWYARSDG-LGHGYQSSFRPRLLDRNELSFVLKILRSCRPDKAGHRRGTSSRGSDVIGECADWSGYAEVHQGEEGENDSIQPEYDNEDDIFSLEAFVKFCRWWNPVTTILWRISNEWASVDPVKVQGFMGRRESERRLKEKSLPGVFLLRFSESSPGRLVLTHTRKASQDVSSGQARKNGSKSCPVSINHTYVTVVGRAGPWTLHYGKGDEGISYSSLRKLVNSRGDLLTLY 1162
+A AG++ G + +WV AT RR +G + V W +L GLQ L T + G D GQ +SE R A E R G L H R+LDR++ F+ ILR + + A + G + +C ++ D D S+E F KF RWW P+ L I N+WA PV V GF+GR E++ L+ G FLLRFSES PG+LV++ + +H+ V V G + + Y SL LV G L LY
Sbjct: 750 MAEAAGVER-GCRLLWVTATSNMANDWRRDNGXXXXXXXXASKRGEFVSWNHLREGLQRNLDVRMTVPCSSSGGDRHDALEGTQYTYLDDGQEVDSEEVXXXXXXXXXXXXXERAAGGERRTGNRRMGPLPHA------TRVLDRSQWGFIRGILRKKQKELA-------NAGVQTV-DCTEYR-------------------LDGRYDFISVETFAKFSRWWVPLMGTLGIIRNDWARTRPVFVHGFIGRLETDENLRRAR--GAFLLRFSESHPGKLVISR-----------------------AYHHSLVEVT-EGGRCYMTVNQQGTRREYESLHDLVTQNGQLRHLY 1041 The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig9876.19317.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-distichus_contig9876.19317.1 >prot_F-distichus_contig9876.19317.1 ID=prot_F-distichus_contig9876.19317.1|Name=mRNA_F-distichus_contig9876.19317.1|organism=Fucus distichus monoicous|type=polypeptide|length=392bp MRVVNGHPGTLCLLGPGLLDPFQNDPSDQKMATLYRAQFKKIRSKPFSLEback to top mRNA from alignment at F-distichus_contig9876:4809..7957+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-distichus_contig9876.19317.1 ID=mRNA_F-distichus_contig9876.19317.1|Name=mRNA_F-distichus_contig9876.19317.1|organism=Fucus distichus monoicous|type=mRNA|length=3149bp|location=Sequence derived from alignment at F-distichus_contig9876:4809..7957+ (Fucus distichus monoicous)back to top Coding sequence (CDS) from alignment at F-distichus_contig9876:4809..7957+ >mRNA_F-distichus_contig9876.19317.1 ID=mRNA_F-distichus_contig9876.19317.1|Name=mRNA_F-distichus_contig9876.19317.1|organism=Fucus distichus monoicous|type=CDS|length=2352bp|location=Sequence derived from alignment at F-distichus_contig9876:4809..7957+ (Fucus distichus monoicous)back to top |