mRNA_F-distichus_contig9874.19312.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig9874.19312.1
Unique NamemRNA_F-distichus_contig9874.19312.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig9874.19312.1 vs. uniprot
Match: A0A6H5KZK4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZK4_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 4.730e-40
Identity = 64/97 (65.98%), Postives = 79/97 (81.44%), Query Frame = 1
Query:   28 GAYGAHGLSKKTDKAKSQWNTAAQYQLLHALALATLPAFEKTRARTVTGVLFTAGITLFSGSIYTYVLTEDKRANRLAPTGGVALILGWATMALLRR 318
            GAYGAHGL+ K+DK K+ W TA QYQ+ HALALATLP ++KT ART  G+ FT GITLFSGSIY   L EDK+A+++AP GG+ +ILGWATMA+L+R
Sbjct:   17 GAYGAHGLAGKSDKIKADWKTATQYQMFHALALATLPIYQKTPARTAAGLFFTTGITLFSGSIYYACLKEDKKASKVAPAGGICMILGWATMAILKR 113          
BLAST of mRNA_F-distichus_contig9874.19312.1 vs. uniprot
Match: A0A835YJ16_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ16_9STRA)

HSP 1 Score: 125 bits (314), Expect = 3.620e-35
Identity = 58/97 (59.79%), Postives = 77/97 (79.38%), Query Frame = 1
Query:   28 GAYGAHGLSKKTDKAKSQWNTAAQYQLLHALALATLPAFEKTRARTVTGVLFTAGITLFSGSIYTYVLTEDKRANRLAPTGGVALILGWATMALLRR 318
            GA GAH L  KT+K K+ WNTA +YQL+H+LALA LPA++++ ART  GVLFT+GI LFSGSIYTY+LT++ + +  AP GG+A I GW ++ALL+R
Sbjct:   18 GAIGAHRLKNKTEKEKNDWNTATRYQLIHSLALAVLPAYQRSNARTAAGVLFTSGIILFSGSIYTYILTDNIKMSGAAPLGGMAFIAGWLSLALLKR 114          
BLAST of mRNA_F-distichus_contig9874.19312.1 vs. uniprot
Match: D8LH09_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH09_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 4.670e-24
Identity = 47/64 (73.44%), Postives = 53/64 (82.81%), Query Frame = 1
Query:   28 GAYGAHGLSKKTDKAKSQWNTAAQYQLLHALALATLPAFEKTRARTVTGVLFTAGITLFSGSIY 219
            GAYGAHGLS K+DK K+ W TA QYQ+ HALALATLP ++KT ART  G+LFT GITLFSGSIY
Sbjct:   18 GAYGAHGLSGKSDKIKADWKTATQYQMFHALALATLPIYQKTPARTAAGLLFTTGITLFSGSIY 81          
BLAST of mRNA_F-distichus_contig9874.19312.1 vs. uniprot
Match: A0A7S4IW56_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IW56_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.530e-20
Identity = 46/100 (46.00%), Postives = 59/100 (59.00%), Query Frame = 1
Query:   28 GAYGAHGLSKKTDKAKSQWNTAAQYQLLHALALATLPAF---EKTRARTVTGVLFTAGITLFSGSIYTYVLTEDKRANRLAPTGGVALILGWATMALLRR 318
            GAYGAHGL  K       + T A+Y L+H+  L   P+     +TRA T  G   T GI LF GS Y   +TED+   + AP GGV+LILGW ++ALLR+
Sbjct:   19 GAYGAHGLRGKDQSYVRSYETGARYHLVHSALLVATPSICGGGRTRAATAAGAFLTTGIGLFCGSCYAVGVTEDRAYGKAAPAGGVSLILGWVSLALLRK 118          
BLAST of mRNA_F-distichus_contig9874.19312.1 vs. uniprot
Match: A0A485KYZ3_9STRA (Aste57867_13786 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KYZ3_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.460e-19
Identity = 46/96 (47.92%), Postives = 57/96 (59.38%), Query Frame = 1
Query:   28 GAYGAHGLSK--KTDKAKSQWNTAAQYQLLHALALATLPAFEKTRARTVTGVLFTAGITLFSGSIYTYVLTEDKRANRLAPTGGVALILGWATMAL 309
            GA+GAHGL    K  K    W+TAA Y L+H++AL  +P    TR   V G L T GI  FSGS+YT VLTE K+   + P GG+A I GW  + L
Sbjct:   32 GAFGAHGLQTRVKDPKLLKNWDTAAHYHLMHSIALLVVPF---TRRPNVVGGLLTTGIVFFSGSLYTLVLTEQKKLGMITPLGGLAFIAGWLALLL 124          
BLAST of mRNA_F-distichus_contig9874.19312.1 vs. uniprot
Match: A0A1V9ZTF8_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZTF8_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 3.170e-18
Identity = 44/96 (45.83%), Postives = 57/96 (59.38%), Query Frame = 1
Query:   28 GAYGAHGLSK--KTDKAKSQWNTAAQYQLLHALALATLPAFEKTRARTVTGVLFTAGITLFSGSIYTYVLTEDKRANRLAPTGGVALILGWATMAL 309
            GA+GAHGL    K  K    W TAA YQL+H++AL  +P     R   + G L  +GI LFSGS+YT VLTE KR   + P GG+  + GW ++ L
Sbjct:   30 GAFGAHGLQTRVKDPKLLKTWETAAHYQLIHSVALLAVPF---ARRPNLAGGLIASGIVLFSGSLYTIVLTEHKRLGMITPMGGLMFVAGWLSLLL 122          
BLAST of mRNA_F-distichus_contig9874.19312.1 vs. uniprot
Match: A0A1Z9BRI6_9BACT (Uncharacterized protein n=2 Tax=Bacteria TaxID=2 RepID=A0A1Z9BRI6_9BACT)

HSP 1 Score: 82.4 bits (202), Expect = 4.260e-18
Identity = 45/100 (45.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query:   28 GAYGAHGLSKKTDKAK-SQWNTAAQYQLLHALALATLP--AFEKTRARTVTGVLFTAGITLFSGSIYTYVLTEDKRANRLAPTGGVALILGWATMALLRR 318
            GA+GAHGL  +    + S W TA+QY LLH++ L  L   A +   +  + G LFTAG+ LFSGSIY  VLTE +    + P GG+ LI GW ++  L R
Sbjct:   18 GAFGAHGLRDRVSPEQISAWTTASQYHLLHSVVLLALALYALDAQASIRLQGSLFTAGVVLFSGSIYLLVLTEQRWLGPVTPIGGLLLIAGWGSLLFLAR 117          
BLAST of mRNA_F-distichus_contig9874.19312.1 vs. uniprot
Match: A0A7S3QFL9_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QFL9_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 6.520e-18
Identity = 46/105 (43.81%), Postives = 63/105 (60.00%), Query Frame = 1
Query:   28 GAYGAHGL--SKKTDKAKSQWNTAAQYQLLHALALATLPAFEKT------RARTVTGVLFTAGITLFSGSIYTYVLTEDKRANRLAPTGGVALILGWATMALLRR 318
            GAY +HGL  +KK++     + T ++YQL+H+  L   PA  ++       A  V G  F +GI +FSGS Y   L ED+   +LAP GGVALI GW ++ALLRR
Sbjct:   19 GAYASHGLKKNKKSETYAKVFETGSRYQLIHSAMLVATPAICRSGGGKYAMASRVAGACFASGIAMFSGSCYAVGLMEDRSYGKLAPVGGVALIGGWISLALLRR 123          
BLAST of mRNA_F-distichus_contig9874.19312.1 vs. uniprot
Match: A0A6A5C3X0_NAEFO (Uncharacterized protein n=2 Tax=Naegleria TaxID=5761 RepID=A0A6A5C3X0_NAEFO)

HSP 1 Score: 82.0 bits (201), Expect = 6.690e-18
Identity = 45/95 (47.37%), Postives = 57/95 (60.00%), Query Frame = 1
Query:   28 GAYGAHGLSKKTDKAKSQ-WNTAAQYQLLHALALATLPAFEKTRARTVTGVLFTAGITLFSGSIYTYVLTEDKRANRLAPTGGVALILGWATMAL 309
            GA+G HGL +     K   W TA QY L+H+LAL  +    KTR   V G LFTAGI +FSGS+Y  VLT+ K+   + P GG + I GW  MA+
Sbjct:   29 GAFGGHGLKRIASPEKIDVWKTAVQYHLIHSLALLAVSQL-KTRHHLVGG-LFTAGIVIFSGSLYALVLTDHKKLGAITPIGGFSFIFGWLAMAI 121          
BLAST of mRNA_F-distichus_contig9874.19312.1 vs. uniprot
Match: A0A1W0A5T2_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A5T2_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 7.690e-18
Identity = 44/96 (45.83%), Postives = 54/96 (56.25%), Query Frame = 1
Query:   28 GAYGAHGLSK--KTDKAKSQWNTAAQYQLLHALALATLPAFEKTRARTVTGVLFTAGITLFSGSIYTYVLTEDKRANRLAPTGGVALILGWATMAL 309
            GA+GAHGL    K  K    W+TAAQY LLH+  L  +P     R   + G L T GI  FSGS+YT VLTE KR   + P GG+  + GW  + L
Sbjct:   24 GAFGAHGLQNRVKDPKMLKNWDTAAQYHLLHSAVLLAVPF---ARRPNLVGGLITTGIVFFSGSLYTLVLTEKKRLGMITPMGGLMFVAGWLCLLL 116          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig9874.19312.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZK4_9PHAE4.730e-4065.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YJ16_9STRA3.620e-3559.79Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LH09_ECTSI4.670e-2473.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4IW56_9STRA1.530e-2046.00Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A485KYZ3_9STRA1.460e-1947.92Aste57867_13786 protein n=1 Tax=Aphanomyces stella... [more]
A0A1V9ZTF8_9STRA3.170e-1845.83Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A1Z9BRI6_9BACT4.260e-1845.00Uncharacterized protein n=2 Tax=Bacteria TaxID=2 R... [more]
A0A7S3QFL9_9STRA6.520e-1843.81Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A6A5C3X0_NAEFO6.690e-1847.37Uncharacterized protein n=2 Tax=Naegleria TaxID=57... [more]
A0A1W0A5T2_9STRA7.690e-1845.83Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig9874contigF-distichus_contig9874:640..1542 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score85.5
Seed ortholog evalue1.6e-14
Seed eggNOG ortholog7668.SPU_006472-tr
Preferred nameTMEM256
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transmembrane protein 256
EggNOG OGs3A6D5@33154,3BSU0@33208,3D9JR@33213,COG2363@1,KOG3472@2759
COG Functional cat.S
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons2
Model size321
Cds size321
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931167.6389074-CDS-F-distichus_contig9874:639..8651622931167.6389074-CDS-F-distichus_contig9874:639..865Fucus distichus monoicousCDSF-distichus_contig9874 640..865 +
1690886187.7447507-CDS-F-distichus_contig9874:639..8651690886187.7447507-CDS-F-distichus_contig9874:639..865Fucus distichus monoicousCDSF-distichus_contig9874 640..865 +
1622931167.6535456-CDS-F-distichus_contig9874:1447..15421622931167.6535456-CDS-F-distichus_contig9874:1447..1542Fucus distichus monoicousCDSF-distichus_contig9874 1448..1542 +
1690886187.7621179-CDS-F-distichus_contig9874:1447..15421690886187.7621179-CDS-F-distichus_contig9874:1447..1542Fucus distichus monoicousCDSF-distichus_contig9874 1448..1542 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig9874.19312.1prot_F-distichus_contig9874.19312.1Fucus distichus monoicouspolypeptideF-distichus_contig9874 640..1542 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig9874.19312.1

>prot_F-distichus_contig9874.19312.1 ID=prot_F-distichus_contig9874.19312.1|Name=mRNA_F-distichus_contig9874.19312.1|organism=Fucus distichus monoicous|type=polypeptide|length=107bp
IHAPSCADKGAYGAHGLSKKTDKAKSQWNTAAQYQLLHALALATLPAFEK
TRARTVTGVLFTAGITLFSGSIYTYVLTEDKRANRLAPTGGVALILGWAT
MALLRR*
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mRNA from alignment at F-distichus_contig9874:640..1542+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig9874.19312.1 ID=mRNA_F-distichus_contig9874.19312.1|Name=mRNA_F-distichus_contig9874.19312.1|organism=Fucus distichus monoicous|type=mRNA|length=903bp|location=Sequence derived from alignment at F-distichus_contig9874:640..1542+ (Fucus distichus monoicous)
ATACATGCACCTTCTTGTGCCGATAAAGGCGCCTACGGAGCCCACGGCTT GTCGAAAAAGACTGACAAGGCTAAGAGCCAGTGGAATACCGCGGCTCAGT ATCAGCTCCTGCACGCCCTGGCTCTCGCCACCCTGCCGGCCTTCGAGAAG ACTCGTGCAAGAACCGTCACGGGCGTGCTCTTCACCGCCGGCATCACACT TTTTTCCGGCTCCATCTACACCTACGGTGAGAAATATATTCACCAGTTCA CCCAGTTGCACACAGATAAAAACTGATGTTGTATTATTTGGCAGTATACT TGTAAACACTACTGTACGACTGTAGCACACTTGTCAGCCGCCACAACGAC CTCGATGAGTCTGTTACACAGTATTAATAGTTTACTTCCGCTATCCCGCT GTCTCCCAGCATCTTTCTGCTTGCAATGTCAAAGCATACGGCAAGTCTAG CTGAGGACCCATTCCGTACCCTACCAAGACGCGCGGGCCATGCCCGATCC TGGCAGCGGACAGCGAGGCGACTCTGGCTACTGTATCTTGTTATTATTGT TCAATCCTTATCGAACGAGTCGCGGGAAAGATCGCACGGATCATGACATG CGACACAATGCCCCCCCCCCTGCGCGGCAGAAAGATCCGCCCAATATTTT TCTCTCACATATACAGTAACGTATTCATAGCTCTATCCCGATCCTATTAA TACTAGTTGAGTTTCTACTCCGTTCTTTGCCCCTCGTGTTTTTTCATCGT GCGCTTTTTTTTGTCTTCTTTTTTGCGACTGATGTCTTGTACTATTCCTA TTGAACAGTTCTCACCGAAGATAAGCGGGCGAATCGCTTGGCGCCAACGG GCGGAGTTGCGCTTATTCTGGGCTGGGCGACCATGGCGCTCCTGAGGCGC TGA
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Coding sequence (CDS) from alignment at F-distichus_contig9874:640..1542+

>mRNA_F-distichus_contig9874.19312.1 ID=mRNA_F-distichus_contig9874.19312.1|Name=mRNA_F-distichus_contig9874.19312.1|organism=Fucus distichus monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at F-distichus_contig9874:640..1542+ (Fucus distichus monoicous)
ATACATGCACCTTCTTGTGCCGATAAAGGCGCCTACGGAGCCCACGGCTT
GTCGAAAAAGACTGACAAGGCTAAGAGCCAGTGGAATACCGCGGCTCAGT
ATCAGCTCCTGCACGCCCTGGCTCTCGCCACCCTGCCGGCCTTCGAGAAG
ACTCGTGCAAGAACCGTCACGGGCGTGCTCTTCACCGCCGGCATCACACT
TTTTTCCGGCTCCATCTACACCTACGATACATGCACCTTCTTGTGCCGAT
AAAGGCGCCTACGGAGCCCACGGCTTGTCGAAAAAGACTGACAAGGCTAA
GAGCCAGTGGAATACCGCGGCTCAGTATCAGCTCCTGCACGCCCTGGCTC
TCGCCACCCTGCCGGCCTTCGAGAAGACTCGTGCAAGAACCGTCACGGGC
GTGCTCTTCACCGCCGGCATCACACTTTTTTCCGGCTCCATCTACACCTA
CGTTCTCACCGAAGATAAGCGGGCGAATCGCTTGGCGCCAACGGGCGGAG
TTGCGCTTATTCTGGGCTGGGCGACCATGGCGCTCCTGAGGCGCTGATTC
TCACCGAAGATAAGCGGGCGAATCGCTTGGCGCCAACGGGCGGAGTTGCG
CTTATTCTGGGCTGGGCGACCATGGCGCTCCTGAGGCGCTGA
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