mRNA_F-distichus_contig98701.19307.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig98701.19307.1
Unique NamemRNA_F-distichus_contig98701.19307.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig98701.19307.1 vs. uniprot
Match: A0A6H5JWS6_9PHAE (Magnesium transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWS6_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.460e-20
Identity = 46/50 (92.00%), Postives = 49/50 (98.00%), Query Frame = 1 
Query:   31 GVSMSSLNLHLRDLRQLFSSQSKSEPAISVRRNCILVNFETLRGIVLVDR 180
            GV MSSL+LHLRD+RQLFSSQSKSEPAISVRRNC+LVNFETLRGIVLVDR
Sbjct:  260 GVQMSSLSLHLRDMRQLFSSQSKSEPAISVRRNCVLVNFETLRGIVLVDR 309
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BLAST of mRNA_F-distichus_contig98701.19307.1 vs. uniprot
Match: D7FS76_ECTSI (Magnesium transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS76_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 1.530e-20
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:   40 MSSLNLHLRDLRQLFSSQSKSEPAISVRRNCILVNFETLRGIVLVDR 180
            MSSLNLHLRD+RQLFSSQSKSEPAISVRRNC+LVNFETLRGIVLVDR
Sbjct:    1 MSSLNLHLRDMRQLFSSQSKSEPAISVRRNCVLVNFETLRGIVLVDR 47
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig98701.19307.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JWS6_9PHAE1.460e-2092.00Magnesium transporter n=1 Tax=Ectocarpus sp. CCAP ... [more]
D7FS76_ECTSI1.530e-2095.74Magnesium transporter n=1 Tax=Ectocarpus siliculos... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig98701contigF-distichus_contig98701:553..738 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.3
Seed ortholog evalue1.7e-16
Seed eggNOG ortholog2880.D7FS76
KEGG koko:K16075
KEGG TC1.A.35.5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.magnesium ion transmembrane transporter activity
EggNOG OGsKOG2662@1,KOG2662@2759
Ec32 ortholog descriptionMg2 transporter protein, CorA-like/Zinc transport protein ZntB
Ec32 orthologEc-01_000840.1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons1
Model size186
Cds size186
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931166.9533846-CDS-F-distichus_contig98701:552..7381622931166.9533846-CDS-F-distichus_contig98701:552..738Fucus distichus monoicousCDSF-distichus_contig98701 553..738 -
1690886187.4081633-CDS-F-distichus_contig98701:552..7381690886187.4081633-CDS-F-distichus_contig98701:552..738Fucus distichus monoicousCDSF-distichus_contig98701 553..738 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig98701.19307.1prot_F-distichus_contig98701.19307.1Fucus distichus monoicouspolypeptideF-distichus_contig98701 553..738 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig98701.19307.1

>prot_F-distichus_contig98701.19307.1 ID=prot_F-distichus_contig98701.19307.1|Name=mRNA_F-distichus_contig98701.19307.1|organism=Fucus distichus monoicous|type=polypeptide|length=62bp
MLCPCLSAGGGVSMSSLNLHLRDLRQLFSSQSKSEPAISVRRNCILVNFE
TLRGIVLVDRCV
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mRNA from alignment at F-distichus_contig98701:553..738-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig98701.19307.1 ID=mRNA_F-distichus_contig98701.19307.1|Name=mRNA_F-distichus_contig98701.19307.1|organism=Fucus distichus monoicous|type=mRNA|length=186bp|location=Sequence derived from alignment at F-distichus_contig98701:553..738- (Fucus distichus monoicous)
ATGCTGTGTCCATGTCTTTCAGCAGGGGGTGGTGTGTCCATGTCAAGCCT
CAACCTGCACTTGCGAGACCTGAGGCAGCTGTTTAGCTCGCAGTCGAAGA
GCGAGCCGGCCATCAGCGTCCGACGGAACTGCATCCTTGTGAACTTCGAG
ACGCTTCGAGGGATCGTACTCGTCGACAGGTGTGTG
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Coding sequence (CDS) from alignment at F-distichus_contig98701:553..738-

>mRNA_F-distichus_contig98701.19307.1 ID=mRNA_F-distichus_contig98701.19307.1|Name=mRNA_F-distichus_contig98701.19307.1|organism=Fucus distichus monoicous|type=CDS|length=372bp|location=Sequence derived from alignment at F-distichus_contig98701:553..738- (Fucus distichus monoicous)
ATGCTGTGTCCATGTCTTTCAGCAGGGGGTGGTGTGTCCATGTCAAGCCT
CAACCTGCACTTGCGAGACCTGAGGCAGCTGTTTAGCTCGCAGTCGAAGA
GCGAGCCGGCCATCAGCGTCCGACGGAACTGCATCCTTGTGAACTTCGAG
ACGCTTCGAGGGATCGTACTCGTCGACAGGTGTGTGATGCTGTGTCCATG
TCTTTCAGCAGGGGGTGGTGTGTCCATGTCAAGCCTCAACCTGCACTTGC
GAGACCTGAGGCAGCTGTTTAGCTCGCAGTCGAAGAGCGAGCCGGCCATC
AGCGTCCGACGGAACTGCATCCTTGTGAACTTCGAGACGCTTCGAGGGAT
CGTACTCGTCGACAGGTGTGTG
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