mRNA_F-distichus_contig98662.19302.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig98662.19302.1
Unique NamemRNA_F-distichus_contig98662.19302.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig98662.19302.1 vs. uniprot
Match: A0A6H5L1C1_9PHAE (SAP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L1C1_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 4.190e-15
Identity = 32/41 (78.05%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:    1 LKALFPKGITLLGFKPLQSLRPDFNVRSPYFLYPDEESTTG 123
            LK L+PKG+ LLGF+P  +LRPDFN+RSPYFLYPDEESTTG
Sbjct:  340 LKGLYPKGLALLGFRPNNTLRPDFNIRSPYFLYPDEESTTG 380
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BLAST of mRNA_F-distichus_contig98662.19302.1 vs. uniprot
Match: A0A835ZF42_9STRA (SPOC like C-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF42_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 9.950e-9
Identity = 25/41 (60.98%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:    1 LKALFPKGITLLGFKPLQSLRPDFNVRSPYFLYPDEESTTG 123
            +K L P GI LLGFKPL  LR D  ++SPYFLYPDE+   G
Sbjct:  352 MKQLHPPGIVLLGFKPLSDLREDHTLKSPYFLYPDEQRMAG 392
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BLAST of mRNA_F-distichus_contig98662.19302.1 vs. uniprot
Match: A0A1Y2F6S9_9FUNG (DNA helicase n=1 Tax=Neocallimastix californiae TaxID=1754190 RepID=A0A1Y2F6S9_9FUNG)

HSP 1 Score: 50.1 bits (118), Expect = 7.140e-6
Identity = 19/34 (55.88%), Postives = 25/34 (73.53%), Query Frame = 1 
Query:   22 GITLLGFKPLQSLRPDFNVRSPYFLYPDEESTTG 123
            G+TLLGFKPL  L+  +N++ PYF+YPDE    G
Sbjct:  341 GLTLLGFKPLSKLKFQYNIKHPYFIYPDENQYIG 374
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BLAST of mRNA_F-distichus_contig98662.19302.1 vs. uniprot
Match: A0A7S3Y266_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y266_HETAK)

HSP 1 Score: 49.7 bits (117), Expect = 9.760e-6
Identity = 19/34 (55.88%), Postives = 27/34 (79.41%), Query Frame = 1 
Query:   22 GITLLGFKPLQSLRPDFNVRSPYFLYPDEESTTG 123
            G TLLGFKP++S+  D N++SPYF+YP E++  G
Sbjct:  313 GFTLLGFKPIKSIGVDQNLKSPYFIYPSEDTVQG 346
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BLAST of mRNA_F-distichus_contig98662.19302.1 vs. uniprot
Match: A0A1Y3NPB1_PIRSE (ATP-dependent DNA helicase II subunit 1 n=1 Tax=Piromyces sp. (strain E2) TaxID=73868 RepID=A0A1Y3NPB1_PIRSE)

HSP 1 Score: 48.5 bits (114), Expect = 2.500e-5
Identity = 18/34 (52.94%), Postives = 25/34 (73.53%), Query Frame = 1 
Query:   22 GITLLGFKPLQSLRPDFNVRSPYFLYPDEESTTG 123
            G+TLLGFKP   L+  +N++ PYF+YPDE+   G
Sbjct:  198 GLTLLGFKPKSKLKFQYNIKHPYFIYPDEKQYVG 231
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BLAST of mRNA_F-distichus_contig98662.19302.1 vs. uniprot
Match: A0A1Y1VG66_9FUNG (ATP-dependent DNA helicase II subunit 1 n=1 Tax=Piromyces finnis TaxID=1754191 RepID=A0A1Y1VG66_9FUNG)

HSP 1 Score: 48.1 bits (113), Expect = 3.420e-5
Identity = 18/34 (52.94%), Postives = 24/34 (70.59%), Query Frame = 1 
Query:   22 GITLLGFKPLQSLRPDFNVRSPYFLYPDEESTTG 123
            G+TLLGFKP   L+  +N++ PYF+YPDE    G
Sbjct:  341 GLTLLGFKPKSKLKFQYNIKHPYFIYPDESQYVG 374
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BLAST of mRNA_F-distichus_contig98662.19302.1 vs. uniprot
Match: UPI001C71461F (X-ray repair cross-complementing protein 6-like n=1 Tax=Penaeus japonicus TaxID=27405 RepID=UPI001C71461F)

HSP 1 Score: 47.8 bits (112), Expect = 4.680e-5
Identity = 18/38 (47.37%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:   10 LFPKGITLLGFKPLQSLRPDFNVRSPYFLYPDEESTTG 123
            ++ +GI LLGFKP+ S++P ++++   FLYPDE+S  G
Sbjct:  339 VYEQGIELLGFKPIDSIKPYYHIKPANFLYPDEKSIQG 376
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BLAST of mRNA_F-distichus_contig98662.19302.1 vs. uniprot
Match: A0A0G4J6I8_PLABS (SAP domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4J6I8_PLABS)

HSP 1 Score: 47.4 bits (111), Expect = 6.410e-5
Identity = 20/41 (48.78%), Postives = 28/41 (68.29%), Query Frame = 1 
Query:    1 LKALFPKGITLLGFKPLQSLRPDFNVRSPYFLYPDEESTTG 123
            +K ++P G+ LLGFKPL+ L P  NV+   F+ PDE+  TG
Sbjct:  321 IKTVYPSGMQLLGFKPLEMLLPYHNVKPSLFVRPDEKRITG 361
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig98662.19302.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5L1C1_9PHAE4.190e-1578.05SAP domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835ZF42_9STRA9.950e-960.98SPOC like C-terminal domain-containing protein n=1... [more]
A0A1Y2F6S9_9FUNG7.140e-655.88DNA helicase n=1 Tax=Neocallimastix californiae Ta... [more]
A0A7S3Y266_HETAK9.760e-655.88Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A1Y3NPB1_PIRSE2.500e-552.94ATP-dependent DNA helicase II subunit 1 n=1 Tax=Pi... [more]
A0A1Y1VG66_9FUNG3.420e-552.94ATP-dependent DNA helicase II subunit 1 n=1 Tax=Pi... [more]
UPI001C71461F4.680e-547.37X-ray repair cross-complementing protein 6-like n=... [more]
A0A0G4J6I8_PLABS6.410e-548.78SAP domain-containing protein n=1 Tax=Plasmodiopho... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig98662contigF-distichus_contig98662:1729..1854 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.8
Seed ortholog evalue1.3e-12
Seed eggNOG ortholog2880.D7FMT3
Preferred nameXRCC6
KEGG koko:K08876,ko:K10884
KEGG Pathwayko03450,map03450
KEGG ModuleM00297
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000018,GO:0000019,GO:0000228,GO:0000723,GO:0000724,GO:0000725,GO:0000726,GO:0000727,GO:0000781,GO:0000782,GO:0000783,GO:0000784,GO:0000785,GO:0000790,GO:0000792,GO:0001067,GO:0001775,GO:0001817,GO:0001819,GO:0001932,GO:0001934,GO:0002200,GO:0002218,GO:0002252,GO:0002253,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0002520,GO:0002562,GO:0002682,GO:0002684,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003684,GO:0003690,GO:0003723,GO:0003824,GO:0004003,GO:0004386,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005667,GO:0005694,GO:0005720,GO:0005724,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006266,GO:0006275,GO:0006281,GO:0006302,GO:0006303,GO:0006310,GO:0006325,GO:0006333,GO:0006342,GO:0006348,GO:0006355,GO:0006357,GO:0006725,GO:0006807,GO:0006810,GO:0006887,GO:0006950,GO:0006955,GO:0006970,GO:0006972,GO:0006974,GO:0006996,GO:0007275,GO:0007399,GO:0008022,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0008156,GO:0009314,GO:0009628,GO:0009651,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010165,GO:0010212,GO:0010332,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010562,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010639,GO:0010720,GO:0012505,GO:0016032,GO:0016043,GO:0016192,GO:0016444,GO:0016458,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016829,GO:0016835,GO:0016887,GO:0017111,GO:0019042,GO:0019043,GO:0019219,GO:0019220,GO:0019222,GO:0022008,GO:0022607,GO:0030141,GO:0030154,GO:0030332,GO:0030466,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031347,GO:0031349,GO:0031399,GO:0031401,GO:0031410,GO:0031503,GO:0031933,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0031982,GO:0031983,GO:0032200,GO:0032204,GO:0032205,GO:0032207,GO:0032208,GO:0032268,GO:0032270,GO:0032392,GO:0032479,GO:0032481,GO:0032501,GO:0032502,GO:0032508,GO:0032940,GO:0032991,GO:0032993,GO:0033036,GO:0033043,GO:0033044,GO:0033151,GO:0033554,GO:0033674,GO:0034641,GO:0034774,GO:0036230,GO:0040029,GO:0042119,GO:0042127,GO:0042162,GO:0042325,GO:0042327,GO:0042538,GO:0042592,GO:0042623,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043299,GO:0043312,GO:0043549,GO:0043564,GO:0043565,GO:0043933,GO:0044085,GO:0044093,GO:0044212,GO:0044237,GO:0044238,GO:0044260,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044433,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044877,GO:0045055,GO:0045088,GO:0045089,GO:0045321,GO:0045595,GO:0045597,GO:0045814,GO:0045859,GO:0045860,GO:0045892,GO:0045893,GO:0045910,GO:0045934,GO:0045935,GO:0045937,GO:0045944,GO:0045950,GO:0046483,GO:0046903,GO:0046982,GO:0046983,GO:0048239,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048660,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050776,GO:0050778,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051094,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051254,GO:0051259,GO:0051262,GO:0051276,GO:0051290,GO:0051291,GO:0051338,GO:0051347,GO:0051575,GO:0051641,GO:0051704,GO:0051716,GO:0051960,GO:0051962,GO:0060205,GO:0060249,GO:0060255,GO:0060284,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070419,GO:0070727,GO:0071103,GO:0071214,GO:0071470,GO:0071472,GO:0071474,GO:0071475,GO:0071478,GO:0071479,GO:0071480,GO:0071481,GO:0071704,GO:0071840,GO:0072695,GO:0075713,GO:0080090,GO:0080134,GO:0090304,GO:0090329,GO:0097159,GO:0097551,GO:0097552,GO:0097680,GO:0097695,GO:0097708,GO:0098687,GO:0099114,GO:0099503,GO:0101002,GO:0104004,GO:0110026,GO:0110027,GO:0140097,GO:1901360,GO:1901363,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1904813,GO:1990391,GO:1990421,GO:1990904,GO:2000026,GO:2000104,GO:2000112,GO:2000113,GO:2001141,GO:2001251
EggNOG free text desc.telomeric DNA binding
EggNOG OGsKOG2327@1,KOG2327@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01001,ko03016,ko03041,ko03400
Exons1
Model size126
Cds size126
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931165.8288348-CDS-F-distichus_contig98662:1728..18541622931165.8288348-CDS-F-distichus_contig98662:1728..1854Fucus distichus monoicousCDSF-distichus_contig98662 1729..1854 -
1690886186.8381956-CDS-F-distichus_contig98662:1728..18541690886186.8381956-CDS-F-distichus_contig98662:1728..1854Fucus distichus monoicousCDSF-distichus_contig98662 1729..1854 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig98662.19302.1prot_F-distichus_contig98662.19302.1Fucus distichus monoicouspolypeptideF-distichus_contig98662 1729..1854 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig98662.19302.1

>prot_F-distichus_contig98662.19302.1 ID=prot_F-distichus_contig98662.19302.1|Name=mRNA_F-distichus_contig98662.19302.1|organism=Fucus distichus monoicous|type=polypeptide|length=42bp
LKALFPKGITLLGFKPLQSLRPDFNVRSPYFLYPDEESTTG*
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mRNA from alignment at F-distichus_contig98662:1729..1854-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig98662.19302.1 ID=mRNA_F-distichus_contig98662.19302.1|Name=mRNA_F-distichus_contig98662.19302.1|organism=Fucus distichus monoicous|type=mRNA|length=126bp|location=Sequence derived from alignment at F-distichus_contig98662:1729..1854- (Fucus distichus monoicous)
TTGAAGGCGCTGTTCCCGAAAGGGATAACTCTGCTGGGCTTCAAGCCGCT
TCAGTCCCTGCGACCGGACTTCAACGTCCGTAGCCCGTACTTCCTCTACC
CAGATGAGGAAAGCACGACCGGGTAA
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Coding sequence (CDS) from alignment at F-distichus_contig98662:1729..1854-

>mRNA_F-distichus_contig98662.19302.1 ID=mRNA_F-distichus_contig98662.19302.1|Name=mRNA_F-distichus_contig98662.19302.1|organism=Fucus distichus monoicous|type=CDS|length=252bp|location=Sequence derived from alignment at F-distichus_contig98662:1729..1854- (Fucus distichus monoicous)
TTGAAGGCGCTGTTCCCGAAAGGGATAACTCTGCTGGGCTTCAAGCCGCT
TCAGTCCCTGCGACCGGACTTCAACGTCCGTAGCCCGTACTTCCTCTACC
CAGATGAGGAAAGCACGACCGGGTAATTGAAGGCGCTGTTCCCGAAAGGG
ATAACTCTGCTGGGCTTCAAGCCGCTTCAGTCCCTGCGACCGGACTTCAA
CGTCCGTAGCCCGTACTTCCTCTACCCAGATGAGGAAAGCACGACCGGGT
AA
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