mRNA_F-distichus_contig98656.19299.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig98656.19299.1
Unique NamemRNA_F-distichus_contig98656.19299.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig98656.19299.1 vs. uniprot
Match: A0A6H5KDT9_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDT9_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 5.840e-22
Identity = 38/56 (67.86%), Postives = 46/56 (82.14%), Query Frame = 1
Query:    1 GICLETVSEQGTLLRRLPCGMLVRSCAHEYCFTCVMTWAERTNTCPMCKERFNAVR 168
            GICLETV +QG LL+R  CG+L  +CAH YCF C+  W+ERTNTCP+CKERFNA+R
Sbjct:   59 GICLETVDDQGFLLKRAACGVLAPACAHAYCFACISIWSERTNTCPLCKERFNAIR 114          
BLAST of mRNA_F-distichus_contig98656.19299.1 vs. uniprot
Match: D7FGZ2_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGZ2_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 3.590e-21
Identity = 38/56 (67.86%), Postives = 45/56 (80.36%), Query Frame = 1
Query:    1 GICLETVSEQGTLLRRLPCGMLVRSCAHEYCFTCVMTWAERTNTCPMCKERFNAVR 168
            GICLETV +QG LLRR  C +L  +CAH YCF C+  W+ERTNTCP+CKERFNA+R
Sbjct:   58 GICLETVDDQGFLLRRAACDVLAPACAHAYCFACISIWSERTNTCPLCKERFNAIR 113          
BLAST of mRNA_F-distichus_contig98656.19299.1 vs. uniprot
Match: A0A7M5WYF4_9CNID (RING-type domain-containing protein n=4 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5WYF4_9CNID)

HSP 1 Score: 55.1 bits (131), Expect = 2.270e-7
Identity = 20/54 (37.04%), Postives = 34/54 (62.96%), Query Frame = 1
Query:    4 ICLETVSEQGTLLRRLPCGMLVRSCAHEYCFTCVMTWAERTNTCPMCKERFNAV 165
            +CL+ V+ +G ++           CAH +CF C+  W+++TNTCP+CK+RF  +
Sbjct:   38 VCLDKVNVRGVII-----------CAHWFCFVCIHEWSKKTNTCPLCKQRFRCI 80          
BLAST of mRNA_F-distichus_contig98656.19299.1 vs. uniprot
Match: L8H6D6_ACACA (Zinc finger, C3HC4 type (RING finger) domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H6D6_ACACA)

HSP 1 Score: 53.5 bits (127), Expect = 5.100e-7
Identity = 21/53 (39.62%), Postives = 32/53 (60.38%), Query Frame = 1
Query:    7 CLETVSEQGTLLRRLPCGMLVRSCAHEYCFTCVMTWAERTNTCPMCKERFNAV 165
            C   + E G ++  L C      C H++CF C+  WAE++NTCP+CK+RF  +
Sbjct:  149 CCICLGEIGEVMGCLTC------CEHKFCFGCISQWAEKSNTCPLCKQRFREI 195          
BLAST of mRNA_F-distichus_contig98656.19299.1 vs. uniprot
Match: A0A7S2WDV2_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WDV2_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.460e-6
Identity = 18/33 (54.55%), Postives = 25/33 (75.76%), Query Frame = 1
Query:   67 VRSCAHEYCFTCVMTWAERTNTCPMCKERFNAV 165
            V  C H++CF C+ TWA+R NTCP+CK RF+ +
Sbjct:  112 VNGCDHKFCFGCIETWADRENTCPLCKTRFSQI 144          
BLAST of mRNA_F-distichus_contig98656.19299.1 vs. uniprot
Match: A0A7S3Z1M5_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z1M5_9EUKA)

HSP 1 Score: 52.8 bits (125), Expect = 1.480e-6
Identity = 24/55 (43.64%), Postives = 31/55 (56.36%), Query Frame = 1
Query:    4 ICLETVSEQGTLLRRLPCGMLVRSCAHEYCFTCVMTWAERTNTCPMCKERFNAVR 168
            ICL  +   G L    PCG       H +CFTC+ TW++R N CP+CK RF  +R
Sbjct:   64 ICLGPLRAWGIL----PCG-------HTFCFTCIQTWSQRDNRCPLCKRRFYHIR 107          
BLAST of mRNA_F-distichus_contig98656.19299.1 vs. uniprot
Match: R0JB27_ANAPL (Trans-acting transcriptional protein ICP0 n=1 Tax=Anas platyrhynchos TaxID=8839 RepID=R0JB27_ANAPL)

HSP 1 Score: 52.8 bits (125), Expect = 1.490e-6
Identity = 17/31 (54.84%), Postives = 26/31 (83.87%), Query Frame = 1
Query:   76 CAHEYCFTCVMTWAERTNTCPMCKERFNAVR 168
            C H++CF CVM WAER++TCP+C++R  ++R
Sbjct:  528 CLHQFCFGCVMRWAERSSTCPLCRQRITSIR 558          
BLAST of mRNA_F-distichus_contig98656.19299.1 vs. uniprot
Match: B8CA12_THAPS (RING-type domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CA12_THAPS)

HSP 1 Score: 52.0 bits (123), Expect = 2.790e-6
Identity = 17/30 (56.67%), Postives = 23/30 (76.67%), Query Frame = 1
Query:   67 VRSCAHEYCFTCVMTWAERTNTCPMCKERF 156
            +  C+H +CFTC+  WA+R NTCP+CK RF
Sbjct:  786 INGCSHPFCFTCIEKWADRENTCPLCKARF 815          
BLAST of mRNA_F-distichus_contig98656.19299.1 vs. uniprot
Match: A0A493TAY6_ANAPP (MOB kinase activator 3B n=2 Tax=Neognathae TaxID=8825 RepID=A0A493TAY6_ANAPP)

HSP 1 Score: 51.2 bits (121), Expect = 5.180e-6
Identity = 16/34 (47.06%), Postives = 27/34 (79.41%), Query Frame = 1
Query:   67 VRSCAHEYCFTCVMTWAERTNTCPMCKERFNAVR 168
            V +C H +CF C+M WA+R++TCP+C++R  ++R
Sbjct:  259 VLACLHRFCFGCIMRWAKRSSTCPLCRQRITSIR 292          
BLAST of mRNA_F-distichus_contig98656.19299.1 vs. uniprot
Match: UPI001901BF7D (E3 ubiquitin-protein ligase DZIP3-like n=1 Tax=Benincasa hispida TaxID=102211 RepID=UPI001901BF7D)

HSP 1 Score: 50.8 bits (120), Expect = 5.450e-6
Identity = 20/53 (37.74%), Postives = 31/53 (58.49%), Query Frame = 1
Query:    4 ICLETVSEQGTLLRRLPCGMLVRSCAHEYCFTCVMTWAERTNTCPMCKERFNA 162
            +C E +  +G  + R+PCG       H Y  +C++TW ER+NTCP+C+    A
Sbjct:  188 VCCEDLKRKGMEVSRIPCG-------HVYHKSCILTWLERSNTCPLCRRSLEA 233          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig98656.19299.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KDT9_9PHAE5.840e-2267.86RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FGZ2_ECTSI3.590e-2167.86RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A7M5WYF4_9CNID2.270e-737.04RING-type domain-containing protein n=4 Tax=Clytia... [more]
L8H6D6_ACACA5.100e-739.62Zinc finger, C3HC4 type (RING finger) domain conta... [more]
A0A7S2WDV2_9STRA1.460e-654.55Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S3Z1M5_9EUKA1.480e-643.64Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
R0JB27_ANAPL1.490e-654.84Trans-acting transcriptional protein ICP0 n=1 Tax=... [more]
B8CA12_THAPS2.790e-656.67RING-type domain-containing protein n=1 Tax=Thalas... [more]
A0A493TAY6_ANAPP5.180e-647.06MOB kinase activator 3B n=2 Tax=Neognathae TaxID=8... [more]
UPI001901BF7D5.450e-637.74E3 ubiquitin-protein ligase DZIP3-like n=1 Tax=Ben... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig98656contigF-distichus_contig98656:468..635 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionZinc finger, RING-type
Ec32 orthologEc-26_002860.1
Exons1
Model size168
Cds size168
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931165.5242546-CDS-F-distichus_contig98656:467..6351622931165.5242546-CDS-F-distichus_contig98656:467..635Fucus distichus monoicousCDSF-distichus_contig98656 468..635 -
1690886186.7523677-CDS-F-distichus_contig98656:467..6351690886186.7523677-CDS-F-distichus_contig98656:467..635Fucus distichus monoicousCDSF-distichus_contig98656 468..635 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig98656.19299.1prot_F-distichus_contig98656.19299.1Fucus distichus monoicouspolypeptideF-distichus_contig98656 468..635 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig98656.19299.1

>prot_F-distichus_contig98656.19299.1 ID=prot_F-distichus_contig98656.19299.1|Name=mRNA_F-distichus_contig98656.19299.1|organism=Fucus distichus monoicous|type=polypeptide|length=56bp
GICLETVSEQGTLLRRLPCGMLVRSCAHEYCFTCVMTWAERTNTCPMCKE
RFNAVR
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mRNA from alignment at F-distichus_contig98656:468..635-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig98656.19299.1 ID=mRNA_F-distichus_contig98656.19299.1|Name=mRNA_F-distichus_contig98656.19299.1|organism=Fucus distichus monoicous|type=mRNA|length=168bp|location=Sequence derived from alignment at F-distichus_contig98656:468..635- (Fucus distichus monoicous)
GGGATCTGCCTGGAGACGGTGAGCGAGCAGGGGACCCTCCTGCGGCGACT GCCGTGCGGTATGCTCGTTCGGTCTTGCGCCCACGAATACTGCTTCACGT GCGTGATGACCTGGGCCGAGAGAACCAACACCTGCCCCATGTGCAAGGAA AGATTCAACGCCGTCCGA
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Coding sequence (CDS) from alignment at F-distichus_contig98656:468..635-

>mRNA_F-distichus_contig98656.19299.1 ID=mRNA_F-distichus_contig98656.19299.1|Name=mRNA_F-distichus_contig98656.19299.1|organism=Fucus distichus monoicous|type=CDS|length=336bp|location=Sequence derived from alignment at F-distichus_contig98656:468..635- (Fucus distichus monoicous)
GGGATCTGCCTGGAGACGGTGAGCGAGCAGGGGACCCTCCTGCGGCGACT
GCCGTGCGGTATGCTCGTTCGGTCTTGCGCCCACGAATACTGCTTCACGT
GCGTGATGACCTGGGCCGAGAGAACCAACACCTGCCCCATGTGCAAGGAA
AGATTCAACGCCGTCCGAGGGATCTGCCTGGAGACGGTGAGCGAGCAGGG
GACCCTCCTGCGGCGACTGCCGTGCGGTATGCTCGTTCGGTCTTGCGCCC
ACGAATACTGCTTCACGTGCGTGATGACCTGGGCCGAGAGAACCAACACC
TGCCCCATGTGCAAGGAAAGATTCAACGCCGTCCGA
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