mRNA_F-distichus_contig98627.19297.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig98627.19297.1
Unique NamemRNA_F-distichus_contig98627.19297.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig98627.19297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig98627contigF-distichus_contig98627:4..1132 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1112
Cds size1110
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931165.384602-CDS-F-distichus_contig98627:3..1251622931165.384602-CDS-F-distichus_contig98627:3..125Fucus distichus monoicousCDSF-distichus_contig98627 4..125 +
1690886186.703779-CDS-F-distichus_contig98627:3..1251690886186.703779-CDS-F-distichus_contig98627:3..125Fucus distichus monoicousCDSF-distichus_contig98627 4..125 +
1622931165.4050534-CDS-F-distichus_contig98627:144..11321622931165.4050534-CDS-F-distichus_contig98627:144..1132Fucus distichus monoicousCDSF-distichus_contig98627 145..1132 +
1690886186.72622-CDS-F-distichus_contig98627:144..11321690886186.72622-CDS-F-distichus_contig98627:144..1132Fucus distichus monoicousCDSF-distichus_contig98627 145..1132 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig98627.19297.1prot_F-distichus_contig98627.19297.1Fucus distichus monoicouspolypeptideF-distichus_contig98627 4..1132 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig98627.19297.1

>prot_F-distichus_contig98627.19297.1 ID=prot_F-distichus_contig98627.19297.1|Name=mRNA_F-distichus_contig98627.19297.1|organism=Fucus distichus monoicous|type=polypeptide|length=370bp
GKEEHVLQEKEGGRTKREYGIVGPATGELWVVLEAKGQEKNNSINNLKGR
SWSTGRRRGRGCGKKSNSETISTGRKENKLEEEQEQQRWQQEENDDKLLL
LQQQELVQQNHHHQQLQQQQQQHPNMMARSSEKERAEEKWLGQGQDHREE
CLLIDTNAGTKCQALQEGWNDKRSLEKRPKPSEDRHELGRMSGELDVDML
GSDHVMQEVPEDKGRREHEAAFGGPKEEDALFATEHYVEEPKHKTNQATS
NSNSNTDTNDHDGKDGDSEQPGREKERKCSKEQGPPVRPGAGLKLESEER
HEWGPKGGSAMLDVGYGKGEREHGDADEKTEGGGDTNVPELVRIRRRNIA
RNEAMLAALSLPQASVFFL*
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mRNA from alignment at F-distichus_contig98627:4..1132+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig98627.19297.1 ID=mRNA_F-distichus_contig98627.19297.1|Name=mRNA_F-distichus_contig98627.19297.1|organism=Fucus distichus monoicous|type=mRNA|length=1129bp|location=Sequence derived from alignment at F-distichus_contig98627:4..1132+ (Fucus distichus monoicous)
GGAAAGGAGGAACACGTGCTACAGGAGAAAGAGGGGGGTAGGACCAAGAG
GGAGTACGGTATCGTGGGACCTGCAACAGGAGAGCTTTGGGTGGTGCTCG
AGGCGAAGGGACAAGAGAAGAAGCAGAAGCATCAACGACAGCAACAGCAT
CAACAACCTCAAGGGCCGCAGCTGGAGCACGGGGCGTCGCAGGGGGAGAG
GCTGCGGAAAGAAAAGCAACAGTGAAACTATCAGTACAGGAAGGAAGGAA
AATAAGCTGGAGGAGGAGCAGGAACAGCAGCGGTGGCAGCAAGAAGAAAA
TGATGACAAGTTGCTGCTGCTGCAGCAGCAGGAGCTAGTACAACAGAATC
ATCATCATCAGCAGCTACAACAGCAACAACAGCAACATCCGAATATGATG
GCGAGGTCGAGCGAGAAAGAGAGGGCGGAAGAGAAATGGCTGGGGCAGGG
TCAAGATCACCGCGAGGAGTGTCTCTTAATAGATACGAATGCAGGAACGA
AATGTCAGGCGTTACAGGAGGGCTGGAACGACAAGCGATCGTTGGAGAAA
CGACCTAAACCCTCTGAGGATCGCCACGAGCTCGGGCGGATGTCTGGAGA
GCTCGACGTGGACATGTTGGGCAGCGATCATGTGATGCAAGAGGTTCCGG
AGGACAAGGGCCGTCGGGAGCATGAAGCAGCGTTTGGAGGACCGAAAGAA
GAAGACGCCTTGTTTGCCACGGAGCATTATGTTGAGGAGCCAAAACACAA
GACAAATCAGGCGACTAGTAATAGTAATAGTAATACTGACACCAACGATC
ATGATGGAAAGGATGGAGATAGCGAGCAGCCCGGGCGGGAAAAGGAACGG
AAATGTAGCAAGGAGCAGGGCCCCCCGGTCCGGCCGGGTGCGGGGCTGAA
GTTGGAGAGCGAAGAGCGGCATGAGTGGGGTCCGAAGGGAGGATCTGCGA
TGCTAGACGTGGGATACGGGAAAGGGGAAAGGGAGCATGGCGATGCGGAT
GAGAAAACGGAGGGGGGGGGAGATACGAACGTGCCGGAGCTTGTCCGCAT
CCGACGAAGAAATATCGCTAGGAACGAGGCCATGCTGGCTGCGCTGTCTC
TTCCCCAGGCAAGTGTGTTTTTTCTGTAG
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Coding sequence (CDS) from alignment at F-distichus_contig98627:4..1132+

>mRNA_F-distichus_contig98627.19297.1 ID=mRNA_F-distichus_contig98627.19297.1|Name=mRNA_F-distichus_contig98627.19297.1|organism=Fucus distichus monoicous|type=CDS|length=2220bp|location=Sequence derived from alignment at F-distichus_contig98627:4..1132+ (Fucus distichus monoicous)
GGAAAGGAGGAACACGTGCTACAGGAGAAAGAGGGGGGTAGGACCAAGAG
GGAGTACGGTATCGTGGGACCTGCAACAGGAGAGCTTTGGGTGGTGCTCG
AGGCGAAGGGACAAGAGAAGAAGGAAAGGAGGAACACGTGCTACAGGAGA
AAGAGGGGGGTAGGACCAAGAGGGAGTACGGTATCGTGGGACCTGCAACA
GGAGAGCTTTGGGTGGTGCTCGAGGCGAAGGGACAAGAGAAGAACAACAG
CATCAACAACCTCAAGGGCCGCAGCTGGAGCACGGGGCGTCGCAGGGGGA
GAGGCTGCGGAAAGAAAAGCAACAGTGAAACTATCAGTACAGGAAGGAAG
GAAAATAAGCTGGAGGAGGAGCAGGAACAGCAGCGGTGGCAGCAAGAAGA
AAATGATGACAAGTTGCTGCTGCTGCAGCAGCAGGAGCTAGTACAACAGA
ATCATCATCATCAGCAGCTACAACAGCAACAACAGCAACATCCGAATATG
ATGGCGAGGTCGAGCGAGAAAGAGAGGGCGGAAGAGAAATGGCTGGGGCA
GGGTCAAGATCACCGCGAGGAGTGTCTCTTAATAGATACGAATGCAGGAA
CGAAATGTCAGGCGTTACAGGAGGGCTGGAACGACAAGCGATCGTTGGAG
AAACGACCTAAACCCTCTGAGGATCGCCACGAGCTCGGGCGGATGTCTGG
AGAGCTCGACGTGGACATGTTGGGCAGCGATCATGTGATGCAAGAGGTTC
CGGAGGACAAGGGCCGTCGGGAGCATGAAGCAGCGTTTGGAGGACCGAAA
GAAGAAGACGCCTTGTTTGCCACGGAGCATTATGTTGAGGAGCCAAAACA
CAAGACAAATCAGGCGACTAGTAATAGTAATAGTAATACTGACACCAACG
ATCATGATGGAAAGGATGGAGATAGCGAGCAGCCCGGGCGGGAAAAGGAA
CGGAAATGTAGCAAGGAGCAGGGCCCCCCGGTCCGGCCGGGTGCGGGGCT
GAAGTTGGAGAGCGAAGAGCGGCATGAGTGGGGTCCGAAGGGAGGATCTG
CGATGCTAGACGTGGGATACGGGAAAGGGGAAAGGGAGCATGGCGATGCG
GATGAGAAAACGGAGGGGGGGGGAGATACGAACGTGCCGGAGCTTGTCCG
CATCCGACGAAGAAATATCGCTAGGAACGAGGCCATGCTGGCTGCGCTGT
CTCTTCCCCAGGCAAGTGTGTTTTTTCTGTAGCAACAGCATCAACAACCT
CAAGGGCCGCAGCTGGAGCACGGGGCGTCGCAGGGGGAGAGGCTGCGGAA
AGAAAAGCAACAGTGAAACTATCAGTACAGGAAGGAAGGAAAATAAGCTG
GAGGAGGAGCAGGAACAGCAGCGGTGGCAGCAAGAAGAAAATGATGACAA
GTTGCTGCTGCTGCAGCAGCAGGAGCTAGTACAACAGAATCATCATCATC
AGCAGCTACAACAGCAACAACAGCAACATCCGAATATGATGGCGAGGTCG
AGCGAGAAAGAGAGGGCGGAAGAGAAATGGCTGGGGCAGGGTCAAGATCA
CCGCGAGGAGTGTCTCTTAATAGATACGAATGCAGGAACGAAATGTCAGG
CGTTACAGGAGGGCTGGAACGACAAGCGATCGTTGGAGAAACGACCTAAA
CCCTCTGAGGATCGCCACGAGCTCGGGCGGATGTCTGGAGAGCTCGACGT
GGACATGTTGGGCAGCGATCATGTGATGCAAGAGGTTCCGGAGGACAAGG
GCCGTCGGGAGCATGAAGCAGCGTTTGGAGGACCGAAAGAAGAAGACGCC
TTGTTTGCCACGGAGCATTATGTTGAGGAGCCAAAACACAAGACAAATCA
GGCGACTAGTAATAGTAATAGTAATACTGACACCAACGATCATGATGGAA
AGGATGGAGATAGCGAGCAGCCCGGGCGGGAAAAGGAACGGAAATGTAGC
AAGGAGCAGGGCCCCCCGGTCCGGCCGGGTGCGGGGCTGAAGTTGGAGAG
CGAAGAGCGGCATGAGTGGGGTCCGAAGGGAGGATCTGCGATGCTAGACG
TGGGATACGGGAAAGGGGAAAGGGAGCATGGCGATGCGGATGAGAAAACG
GAGGGGGGGGGAGATACGAACGTGCCGGAGCTTGTCCGCATCCGACGAAG
AAATATCGCTAGGAACGAGGCCATGCTGGCTGCGCTGTCTCTTCCCCAGG
CAAGTGTGTTTTTTCTGTAG
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