mRNA_F-distichus_contig9856.19293.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig9856.19293.1
Unique NamemRNA_F-distichus_contig9856.19293.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig9856.19293.1 vs. uniprot
Match: A0A6A6P5T9_9PEZI (Uncharacterized protein n=1 Tax=Lineolata rhizophorae TaxID=578093 RepID=A0A6A6P5T9_9PEZI)

HSP 1 Score: 75.9 bits (185), Expect = 1.500e-14
Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 1
Query:    1 QACAEFCEGSTYFGTEYGRECYCGEATDDPTS-LGSTTCSISCSGDSTQTCGGSWALSLYE 180
            + CA+FC+GSTYFGTEYG+ECYCG+   +PTS    T CS +C+GD  Q CG    LSLYE
Sbjct:  950 EMCADFCDGSTYFGTEYGQECYCGDGFSNPTSDAPETDCSFACAGDEQQLCGAGNRLSLYE 1010          
BLAST of mRNA_F-distichus_contig9856.19293.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 9.770e-14
Identity = 32/61 (52.46%), Postives = 46/61 (75.41%), Query Frame = 1
Query:    7 CAEFCEGSTYFGTEYGRECYCGEATDDPTSLG-STTCSISCSGDSTQTCGGSWALSLYEFT 186
            CA+FCEGS YFG ++G EC+C  + D P  LG S  C ++CSGDS++ CGGS+A+ +YE++
Sbjct:  208 CADFCEGSDYFGVQFGYECFCSSSGDTPDELGESEDCEMACSGDSSEICGGSYAIQVYEYS 268          
BLAST of mRNA_F-distichus_contig9856.19293.1 vs. uniprot
Match: A0A1V1T7Y9_9FUNG (Uncharacterized protein n=3 Tax=Fungi TaxID=4751 RepID=A0A1V1T7Y9_9FUNG)

HSP 1 Score: 71.6 bits (174), Expect = 4.660e-13
Identity = 35/64 (54.69%), Postives = 45/64 (70.31%), Query Frame = 1
Query:    1 QACAEFCEGSTYFGTEYGRECYCGEATDDPTSLG-STTCSISCSGDSTQTCGGSWALSLYEFTV 189
            +ACA FCEG TYFGTEYG ECYCG+   + +    S+ CS++C+GD+TQ CG    LS+YE T 
Sbjct:  945 EACATFCEGFTYFGTEYGAECYCGDDFGEGSVASPSSQCSMACNGDATQLCGAGNRLSVYELTT 1008          
BLAST of mRNA_F-distichus_contig9856.19293.1 vs. uniprot
Match: D8LDH2_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDH2_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 6.300e-13
Identity = 34/65 (52.31%), Postives = 43/65 (66.15%), Query Frame = 1
Query:    1 QACAEFCEGSTYFGTEYGRECYCGEATD-DPTSL---GSTTCSISCSGDSTQTCGGSWALSLYEF 183
            + CA +CEG  +FG +YG EC+CG   + D   L   GSTTC   C+GD  QTCGG WA+SLYE+
Sbjct:  416 EMCATYCEGDDFFGMQYGSECWCGSTDEKDDEDLFRHGSTTCEYPCAGDEEQTCGGYWAISLYEY 480          
BLAST of mRNA_F-distichus_contig9856.19293.1 vs. uniprot
Match: A0A1W5X9Y9_9PEZI (WSC domain-containing protein n=1 Tax=Kretzschmaria deusta TaxID=110526 RepID=A0A1W5X9Y9_9PEZI)

HSP 1 Score: 70.5 bits (171), Expect = 1.190e-12
Identity = 35/62 (56.45%), Postives = 44/62 (70.97%), Query Frame = 1
Query:    4 ACAEFCEGSTYFGTEYGRECYCGEATDDPTSLG-STTCSISCSGDSTQTCGGSWALSLYEFT 186
            ACA FCEG TYFGTEYG ECYCG+   + + +  S  CS++C+GD+TQ CG    LS+YE T
Sbjct:  953 ACATFCEGFTYFGTEYGAECYCGDEFGEGSVVAPSGECSMACNGDATQLCGAGNRLSVYELT 1014          
BLAST of mRNA_F-distichus_contig9856.19293.1 vs. uniprot
Match: D8LDH3_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDH3_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 1.560e-12
Identity = 31/64 (48.44%), Postives = 45/64 (70.31%), Query Frame = 1
Query:    1 QACAEFCEGSTYFGTEYGRECYCG----EATDDPTSLGSTTCSISCSGDSTQTCGGSWALSLYE 180
            + C+++CE   +FG +YG EC+CG    E  +D    GS TC+++CSGD  +TCGGSWA+SLY+
Sbjct:  318 EKCSKYCESEPFFGMQYGSECWCGTGAGEDVEDMFRHGSATCNMACSGDKDKTCGGSWAMSLYQ 381          
BLAST of mRNA_F-distichus_contig9856.19293.1 vs. uniprot
Match: A0A4Z0Z597_9PEZI (Uncharacterized protein n=1 Tax=Xylaria hypoxylon TaxID=37992 RepID=A0A4Z0Z597_9PEZI)

HSP 1 Score: 69.3 bits (168), Expect = 3.030e-12
Identity = 34/64 (53.12%), Postives = 43/64 (67.19%), Query Frame = 1
Query:    1 QACAEFCEGSTYFGTEYGRECYCGEATDDPTSLG-STTCSISCSGDSTQTCGGSWALSLYEFTV 189
            + CA FCEG TYFGTEYG ECYCG    + + +  S  CS++C+GD+TQ CG    LS+YE T 
Sbjct:  951 EVCATFCEGFTYFGTEYGVECYCGNEFGEGSVVAPSAQCSMACNGDATQLCGAGNRLSVYELTA 1014          
BLAST of mRNA_F-distichus_contig9856.19293.1 vs. uniprot
Match: A0A6G1GAA0_9PEZI (WSC-domain-containing protein n=1 Tax=Eremomyces bilateralis CBS 781.70 TaxID=1392243 RepID=A0A6G1GAA0_9PEZI)

HSP 1 Score: 67.8 bits (164), Expect = 1.040e-11
Identity = 28/61 (45.90%), Postives = 43/61 (70.49%), Query Frame = 1
Query:    7 CAEFCEGSTYFGTEYGRECYCGEATD---DPTSLGSTTCSISCSGDSTQTCGGSWALSLYE 180
            CA+FC+G+TYFG +YG+EC+CGE+     +P+      C + C  + +QTCGG W++SLY+
Sbjct:  417 CADFCQGTTYFGVQYGQECFCGESISAGREPSVDNGAKCIMKCKANGSQTCGGDWSISLYK 477          
BLAST of mRNA_F-distichus_contig9856.19293.1 vs. uniprot
Match: A0A132BBV2_9HELO (WSC-domain-containing protein n=1 Tax=Mollisia scopiformis TaxID=149040 RepID=A0A132BBV2_9HELO)

HSP 1 Score: 67.0 bits (162), Expect = 1.340e-11
Identity = 29/62 (46.77%), Postives = 41/62 (66.13%), Query Frame = 1
Query:    4 ACAEFCEGSTYFGTEYGRECYCGEATDDPTSLGSTTCSISCSGDSTQTCGGSWALSLYEFTV 189
            +CA  C G  YFGT+YG +C CG+A     +     C++ C+GDST+TCGG W  S+YEF++
Sbjct:   76 SCAAMCVGYQYFGTQYGYQCGCGDAIPSAVAANDD-CTVPCAGDSTETCGGGWQYSIYEFSI 136          
BLAST of mRNA_F-distichus_contig9856.19293.1 vs. uniprot
Match: A0A1S7UM18_ROSNE (Putative WSC domain-containing protein n=1 Tax=Rosellinia necatrix TaxID=77044 RepID=A0A1S7UM18_ROSNE)

HSP 1 Score: 67.4 bits (163), Expect = 1.450e-11
Identity = 33/62 (53.23%), Postives = 41/62 (66.13%), Query Frame = 1
Query:    4 ACAEFCEGSTYFGTEYGRECYCGEATDDPTSLGST-TCSISCSGDSTQTCGGSWALSLYEFT 186
            ACA FCEGS YFG EYG ECYCG+   + +    T  C+++C GD+TQ CG    LS+YE T
Sbjct:  948 ACAAFCEGSVYFGAEYGVECYCGDEFGEGSVAAPTGQCNVACGGDATQLCGAGDRLSVYELT 1009          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig9856.19293.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A6P5T9_9PEZI1.500e-1459.02Uncharacterized protein n=1 Tax=Lineolata rhizopho... [more]
D8LC73_ECTSI9.770e-1452.46Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus sili... [more]
A0A1V1T7Y9_9FUNG4.660e-1354.69Uncharacterized protein n=3 Tax=Fungi TaxID=4751 R... [more]
D8LDH2_ECTSI6.300e-1352.31WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A1W5X9Y9_9PEZI1.190e-1256.45WSC domain-containing protein n=1 Tax=Kretzschmari... [more]
D8LDH3_ECTSI1.560e-1248.44WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A4Z0Z597_9PEZI3.030e-1253.13Uncharacterized protein n=1 Tax=Xylaria hypoxylon ... [more]
A0A6G1GAA0_9PEZI1.040e-1145.90WSC-domain-containing protein n=1 Tax=Eremomyces b... [more]
A0A132BBV2_9HELO1.340e-1146.77WSC-domain-containing protein n=1 Tax=Mollisia sco... [more]
A0A1S7UM18_ROSNE1.450e-1153.23Putative WSC domain-containing protein n=1 Tax=Ros... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig9856contigF-distichus_contig9856:9739..10281 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.3
Seed ortholog evalue6e-12
Seed eggNOG ortholog2880.D8LC73
KEGG koko:K11244
KEGG Pathwayko04011,ko04139,map04011,map04139
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons2
Model size192
Cds size192
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931165.1244137-CDS-F-distichus_contig9856:9738..98701622931165.1244137-CDS-F-distichus_contig9856:9738..9870Fucus distichus monoicousCDSF-distichus_contig9856 9739..9870 -
1690886186.605819-CDS-F-distichus_contig9856:9738..98701690886186.605819-CDS-F-distichus_contig9856:9738..9870Fucus distichus monoicousCDSF-distichus_contig9856 9739..9870 -
1622931165.1417897-CDS-F-distichus_contig9856:10221..102811622931165.1417897-CDS-F-distichus_contig9856:10221..10281Fucus distichus monoicousCDSF-distichus_contig9856 10222..10281 -
1690886186.6175327-CDS-F-distichus_contig9856:10221..102811690886186.6175327-CDS-F-distichus_contig9856:10221..10281Fucus distichus monoicousCDSF-distichus_contig9856 10222..10281 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig9856.19293.1prot_F-distichus_contig9856.19293.1Fucus distichus monoicouspolypeptideF-distichus_contig9856 9739..10281 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig9856.19293.1

>prot_F-distichus_contig9856.19293.1 ID=prot_F-distichus_contig9856.19293.1|Name=mRNA_F-distichus_contig9856.19293.1|organism=Fucus distichus monoicous|type=polypeptide|length=64bp
QACAEFCEGSTYFGTEYGRECYCGEATDDPTSLGSTTCSISCSGDSTQTC
GGSWALSLYEFTV*
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mRNA from alignment at F-distichus_contig9856:9739..10281-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig9856.19293.1 ID=mRNA_F-distichus_contig9856.19293.1|Name=mRNA_F-distichus_contig9856.19293.1|organism=Fucus distichus monoicous|type=mRNA|length=543bp|location=Sequence derived from alignment at F-distichus_contig9856:9739..10281- (Fucus distichus monoicous)
CAGGCATGCGCCGAGTTCTGCGAGGGATCGACGTACTTTGGCACCGAATA CGGGCGCGAGGTGAGTCGACAATCTATTCGGTGTATATTGTATCAGGATC TCTTGGGTGACTTCTTCTATTGACCAAGTTATATTACCGACTTGAAAGCT GATATCGAAGCAAAGCCACAACAACTTGTTTTACAGTCTTGCGAGGCAGG GAAAAGGGTTGAAGTAGAATGATGCCGCTTCTTCGGCCAAAAAAATATTC TTCGGCCAAAATAATATCCTAGTCGGGGAGGGTGCTCTGCGGAAACATCG CGATGATATCTGGTGGACCAGGCATATCGTACTACAGACGGTGGTTATAT TTGCCTTTATTTGGAAAGTCCTTGTGACCATGCTTGGCGATGATACCCTT TTACCTGGCAGTGCTATTGCGGAGAAGCAACGGACGATCCCACCAGCCTG GGCTCGACGACGTGCAGCATATCTTGCAGTGGTGATTCGACACAAACTTG TGGTGGCTCCTGGGCGCTGTCTTTGTACGAGTTCACGGTTTGA
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Coding sequence (CDS) from alignment at F-distichus_contig9856:9739..10281-

>mRNA_F-distichus_contig9856.19293.1 ID=mRNA_F-distichus_contig9856.19293.1|Name=mRNA_F-distichus_contig9856.19293.1|organism=Fucus distichus monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at F-distichus_contig9856:9739..10281- (Fucus distichus monoicous)
CAGGCATGCGCCGAGTTCTGCGAGGGATCGACGTACTTTGGCACCGAATA
CGGGCGCGAGCAGGCATGCGCCGAGTTCTGCGAGGGATCGACGTACTTTG
GCACCGAATACGGGCGCGAGTGCTATTGCGGAGAAGCAACGGACGATCCC
ACCAGCCTGGGCTCGACGACGTGCAGCATATCTTGCAGTGGTGATTCGAC
ACAAACTTGTGGTGGCTCCTGGGCGCTGTCTTTGTACGAGTTCACGGTTT
GATGCTATTGCGGAGAAGCAACGGACGATCCCACCAGCCTGGGCTCGACG
ACGTGCAGCATATCTTGCAGTGGTGATTCGACACAAACTTGTGGTGGCTC
CTGGGCGCTGTCTTTGTACGAGTTCACGGTTTGA
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