mRNA_F-distichus_contig98523.19286.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig98523.19286.1
Unique NamemRNA_F-distichus_contig98523.19286.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig98523.19286.1 vs. uniprot
Match: D7FHI5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHI5_ECTSI)

HSP 1 Score: 178 bits (451), Expect = 8.380e-53
Identity = 87/117 (74.36%), Postives = 93/117 (79.49%), Query Frame = 1
Query:    4 YAFAKRAQITLTERWAASHRS--VCFNSMHPGWADTPGLAVGMPGFHRAQAGSLRSSEEGADTIVWLACSETAGKETGKFWFDRKARRMHMPLAGTRASEEEEQALWDAAERLCSER 348
            YA AKRAQ+TLTERWAA H+   V FNSMHPGW DTPGLA GMP F   Q GSLRSSEEG+DTIVWLACS  A  ETGKFWFDRKA R HMPLAGTR S++EE  LW+A ER CSER
Sbjct:  237 YALAKRAQVTLTERWAAMHKDGGVSFNSMHPGWCDTPGLASGMPDFRERQQGSLRSSEEGSDTIVWLACSRAAFGETGKFWFDRKATRTHMPLAGTRMSQKEEGDLWEAVERACSER 353          
BLAST of mRNA_F-distichus_contig98523.19286.1 vs. uniprot
Match: A0A662YWD3_ACIRT (Dehydrogenase/reductase SDR family member 12 n=3 Tax=Acipenseroidei TaxID=186622 RepID=A0A662YWD3_ACIRT)

HSP 1 Score: 117 bits (293), Expect = 6.180e-30
Identity = 58/114 (50.88%), Postives = 77/114 (67.54%), Query Frame = 1
Query:    4 YAFAKRAQITLTERWAASHRSVCFNSMHPGWADTPGLAVGMPGFHRAQAGSLRSSEEGADTIVWLACSETAGKE-TGKFWFDRKARRMHMPLAGTRASEEEEQALWDAAERLCS 342
            YA  KR Q+ +TE+WA  H S+ F++MHPGWADTP +   MP FHR+    LR++E+GADTIVWLA SE A  + +G F+ DRKA   H+PLA TR++ EEEQ      + L +
Sbjct:  161 YAQNKRQQVVMTEQWAKMHSSIHFSAMHPGWADTPAVRSAMPDFHRSMKNKLRTAEQGADTIVWLALSEAARTQPSGLFFQDRKAVSTHLPLAWTRSTPEEEQKFMKILDYLAN 274          
BLAST of mRNA_F-distichus_contig98523.19286.1 vs. uniprot
Match: W5L265_ASTMX (Dehydrogenase/reductase 12 n=4 Tax=Astyanax mexicanus TaxID=7994 RepID=W5L265_ASTMX)

HSP 1 Score: 118 bits (295), Expect = 6.870e-30
Identity = 57/114 (50.00%), Postives = 78/114 (68.42%), Query Frame = 1
Query:    1 SYAFAKRAQITLTERWAASHRSVCFNSMHPGWADTPGLAVGMPGFHRAQAGSLRSSEEGADTIVWLACSETAGKE-TGKFWFDRKARRMHMPLAGTRASEEEEQALWDAAERLC 339
            +YA  KR Q+ +TERWAA H+ + F+SMHPGWADTP +   MP FH      LRS E+GADT+VWLA S+ A ++ +G F+ DRKA   H+PLA +++S  EE+ L +  E+L 
Sbjct:  200 AYAQNKRQQVVMTERWAAQHKEIHFSSMHPGWADTPAVQTSMPDFHAKMKNKLRSEEQGADTVVWLAVSDAALRQPSGLFFQDRKAVPTHLPLALSKSSPAEEEKLMNTLEQLA 313          
BLAST of mRNA_F-distichus_contig98523.19286.1 vs. uniprot
Match: A0A3N5JRL2_9GAMM (SDR family NAD(P)-dependent oxidoreductase n=1 Tax=Xanthomonadales bacterium TaxID=2006849 RepID=A0A3N5JRL2_9GAMM)

HSP 1 Score: 121 bits (303), Expect = 9.870e-30
Identity = 62/116 (53.45%), Postives = 76/116 (65.52%), Query Frame = 1
Query:    1 SYAFAKRAQITLTERWAAS--HRSVCFNSMHPGWADTPGLAVGMPGFHRAQAGSLRSSEEGADTIVWLACSETAGKETGKFWFDRKARRMHMPLAGTRASEEEEQALWDAAERLCS 342
            +YA AKRA +TLTE WA    +  V  ++MHPGWADTPG+A  +PGFH      LR+++EGADTI WLA +E A K TG FW DR+    H+   GT  S +E QALWDA  RL S
Sbjct:  466 AYARAKRALVTLTEMWAEQLQNSGVVVHAMHPGWADTPGVAGSLPGFHTLTRPFLRTADEGADTITWLAAAEEAAKVTGLFWLDREPHTTHV-FPGTHPSPQERQALWDALARLTS 580          
BLAST of mRNA_F-distichus_contig98523.19286.1 vs. uniprot
Match: UPI0009E2707C (dehydrogenase/reductase SDR family member 12-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E2707C)

HSP 1 Score: 117 bits (293), Expect = 1.410e-29
Identity = 52/114 (45.61%), Postives = 79/114 (69.30%), Query Frame = 1
Query:    1 SYAFAKRAQITLTERWAASHRSVCFNSMHPGWADTPGLAVGMPGFHRAQAGSLRSSEEGADTIVWLACSETAGKETGKFWFDRKARRMHMPLAGTRASEEEEQALWDAAERLCS 342
            +YA  KR Q+ +TE+WA  H+ + F+SMHPGWADTP +   MPGFH+     LR+SE+GADTI+WL+ ++ + + +G F+ DRK    H+PLA ++AS+ ++  L +  E+L S
Sbjct:  202 AYAQNKRQQVIMTEKWAEKHKEIFFSSMHPGWADTPAVRTSMPGFHQKMKDRLRTSEQGADTIIWLSIADMSKEISGAFYQDRKPVATHLPLAWSKASDTDKNELMNDLEKLAS 315          
BLAST of mRNA_F-distichus_contig98523.19286.1 vs. uniprot
Match: UPI0010FCC4B5 (dehydrogenase/reductase SDR family member 12-like n=2 Tax=Acropora TaxID=6127 RepID=UPI0010FCC4B5)

HSP 1 Score: 117 bits (292), Expect = 1.910e-29
Identity = 53/114 (46.49%), Postives = 77/114 (67.54%), Query Frame = 1
Query:    1 SYAFAKRAQITLTERWAASHRSVCFNSMHPGWADTPGLAVGMPGFHRAQAGSLRSSEEGADTIVWLACSETAGKETGKFWFDRKARRMHMPLAGTRASEEEEQALWDAAERLCS 342
            +YA  KR Q+ +TE+WA  H+ + F+SMHPGWADTP +   MPGF++     LRSSE+GADTI+WLA ++   +++G F+ DR+A   H+PLA ++AS+ +   L    E L S
Sbjct:  202 AYAQNKRQQVIMTEKWAEKHKEIFFSSMHPGWADTPAVRSSMPGFYQKMKDRLRSSEQGADTIIWLAVADMTKEKSGAFYQDRRAVATHLPLAWSQASKADRDTLMSKLEELAS 315          
BLAST of mRNA_F-distichus_contig98523.19286.1 vs. uniprot
Match: A0A672PZ16_SINGR (Dehydrogenase/reductase SDR family member 12-like n=7 Tax=Cyprinoidei TaxID=30727 RepID=A0A672PZ16_SINGR)

HSP 1 Score: 115 bits (287), Expect = 1.880e-28
Identity = 56/114 (49.12%), Postives = 75/114 (65.79%), Query Frame = 1
Query:    1 SYAFAKRAQITLTERWAASHRSVCFNSMHPGWADTPGLAVGMPGFHRAQAGSLRSSEEGADTIVWLACSETAGKE-TGKFWFDRKARRMHMPLAGTRASEEEEQALWDAAERLC 339
            +YA  KR Q+ +TE+WAA H+ V F+SMHPGWADTP +   MP F+      LR+  +GADT+VWLA S+TA ++ +G F+ DRKA   H+PLA +R S  E+Q L    E L 
Sbjct:  234 AYAQNKRQQVIMTEQWAAQHKEVHFSSMHPGWADTPAVRSSMPDFYAKMKNKLRTEAQGADTVVWLAISDTASRQPSGLFFQDRKAVSTHLPLASSRTSPAEDQKLMSELEELA 347          
BLAST of mRNA_F-distichus_contig98523.19286.1 vs. uniprot
Match: A0A8B8VS40_BALMU (dehydrogenase/reductase SDR family member 12 isoform X5 n=1 Tax=Balaenoptera musculus TaxID=9771 RepID=A0A8B8VS40_BALMU)

HSP 1 Score: 113 bits (282), Expect = 2.120e-28
Identity = 55/113 (48.67%), Postives = 74/113 (65.49%), Query Frame = 1
Query:    4 YAFAKRAQITLTERWAASHRSVCFNSMHPGWADTPGLAVGMPGFHRAQAGSLRSSEEGADTIVWLACSETAGKE-TGKFWFDRKARRMHMPLAGTRASEEEEQALWDAAERLC 339
            YA  KR Q+ LTERWA +H ++ F+ MHPGW DTPG+ + MPGFH      LRS  +GADT++WLA + TA  + +G+F+ DRK    H+PLA T +S  EE+ L +  E L 
Sbjct:  152 YAQNKRQQVVLTERWARAHPAIHFSCMHPGWVDTPGVRLSMPGFHARLGARLRSEAQGADTVLWLALAPTAAAQPSGRFFQDRKPVPTHLPLARTSSSPAEEEKLIEILEELA 264          
BLAST of mRNA_F-distichus_contig98523.19286.1 vs. uniprot
Match: A0A2R9AC44_PANPA (Uncharacterized protein n=9 Tax=Simiiformes TaxID=314293 RepID=A0A2R9AC44_PANPA)

HSP 1 Score: 114 bits (285), Expect = 2.460e-28
Identity = 57/113 (50.44%), Postives = 74/113 (65.49%), Query Frame = 1
Query:    4 YAFAKRAQITLTERWAASHRSVCFNSMHPGWADTPGLAVGMPGFHRAQAGSLRSSEEGADTIVWLACSETAGKE-TGKFWFDRKARRMHMPLAGTRASEEEEQALWDAAERLC 339
            YA  KR Q+ LTERWA  H ++ F+SMHPGWADTPG+   MPGFH      LRS  +GADT++WLA S  A  + +G+F+ DRK    H+PLA T +S  EE+ L +  E+L 
Sbjct:  212 YAQNKRQQVVLTERWAQGHLAIHFSSMHPGWADTPGVRQAMPGFHARFRDRLRSEAQGADTVLWLALSSAAAAQPSGRFFQDRKPVSTHLPLARTSSSPAEEEKLIEILEQLA 324          
BLAST of mRNA_F-distichus_contig98523.19286.1 vs. uniprot
Match: A0A8C6S3H5_9GOBI (Flj13639 n=2 Tax=Neogobius melanostomus TaxID=47308 RepID=A0A8C6S3H5_9GOBI)

HSP 1 Score: 113 bits (283), Expect = 3.240e-28
Identity = 57/113 (50.44%), Postives = 75/113 (66.37%), Query Frame = 1
Query:    4 YAFAKRAQITLTERWAASHRSVCFNSMHPGWADTPGLAVGMPGFHRAQAGSLRSSEEGADTIVWLACSETAGKE-TGKFWFDRKARRMHMPLAGTRASEEEEQALWDAAERLC 339
            YA  KR Q+ LTE+WA +H ++ F+ MHPGW DTP +A  MP FHR+   SLRS E+GADT++WLA SE A K  +G+F+ DR+    H+PLA T +S  EEQ L    E + 
Sbjct:  188 YAQHKRQQVVLTEQWAKAHPTIHFSVMHPGWVDTPTVANAMPDFHRSMKASLRSPEQGADTVLWLALSEAATKNPSGRFYQDRRVVPAHLPLAWTHSSPLEEQKLMALLEDMA 300          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig98523.19286.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHI5_ECTSI8.380e-5374.36Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A662YWD3_ACIRT6.180e-3050.88Dehydrogenase/reductase SDR family member 12 n=3 T... [more]
W5L265_ASTMX6.870e-3050.00Dehydrogenase/reductase 12 n=4 Tax=Astyanax mexica... [more]
A0A3N5JRL2_9GAMM9.870e-3053.45SDR family NAD(P)-dependent oxidoreductase n=1 Tax... [more]
UPI0009E2707C1.410e-2945.61dehydrogenase/reductase SDR family member 12-like ... [more]
UPI0010FCC4B51.910e-2946.49dehydrogenase/reductase SDR family member 12-like ... [more]
A0A672PZ16_SINGR1.880e-2849.12Dehydrogenase/reductase SDR family member 12-like ... [more]
A0A8B8VS40_BALMU2.120e-2848.67dehydrogenase/reductase SDR family member 12 isofo... [more]
A0A2R9AC44_PANPA2.460e-2850.44Uncharacterized protein n=9 Tax=Simiiformes TaxID=... [more]
A0A8C6S3H5_9GOBI3.240e-2850.44Flj13639 n=2 Tax=Neogobius melanostomus TaxID=4730... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig98523contigF-distichus_contig98523:1136..1893 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score179.5
Seed ortholog evalue9.2e-43
Seed eggNOG ortholog2880.D7FHI5
Preferred nameDHRS12
KEGG koko:K11168
Hectar predicted targeting categoryother localisation
EggNOG free text desc.oxidation-reduction process
EggNOG OGsCOG1028@1,KOG1208@2759
Ec32 ortholog descriptionNAD(P)-binding domain
Ec32 orthologEc-25_002240.1
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons2
Model size351
Cds size351
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931164.590113-CDS-F-distichus_contig98523:1135..12881622931164.590113-CDS-F-distichus_contig98523:1135..1288Fucus distichus monoicousCDSF-distichus_contig98523 1136..1288 -
1690886186.3852217-CDS-F-distichus_contig98523:1135..12881690886186.3852217-CDS-F-distichus_contig98523:1135..1288Fucus distichus monoicousCDSF-distichus_contig98523 1136..1288 -
1622931164.6255565-CDS-F-distichus_contig98523:1695..18931622931164.6255565-CDS-F-distichus_contig98523:1695..1893Fucus distichus monoicousCDSF-distichus_contig98523 1696..1893 -
1690886186.4006495-CDS-F-distichus_contig98523:1695..18931690886186.4006495-CDS-F-distichus_contig98523:1695..1893Fucus distichus monoicousCDSF-distichus_contig98523 1696..1893 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig98523.19286.1prot_F-distichus_contig98523.19286.1Fucus distichus monoicouspolypeptideF-distichus_contig98523 1136..1893 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig98523.19286.1

>prot_F-distichus_contig98523.19286.1 ID=prot_F-distichus_contig98523.19286.1|Name=mRNA_F-distichus_contig98523.19286.1|organism=Fucus distichus monoicous|type=polypeptide|length=117bp
SYAFAKRAQITLTERWAASHRSVCFNSMHPGWADTPGLAVGMPGFHRAQA
GSLRSSEEGADTIVWLACSETAGKETGKFWFDRKARRMHMPLAGTRASEE
EEQALWDAAERLCSER*
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mRNA from alignment at F-distichus_contig98523:1136..1893-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig98523.19286.1 ID=mRNA_F-distichus_contig98523.19286.1|Name=mRNA_F-distichus_contig98523.19286.1|organism=Fucus distichus monoicous|type=mRNA|length=758bp|location=Sequence derived from alignment at F-distichus_contig98523:1136..1893- (Fucus distichus monoicous)
AGCTACGCTTTCGCTAAGCGCGCTCAGATAACGCTCACCGAACGGTGGGC AGCTTCGCACAGGAGCGTGTGCTTCAATTCGATGCACCCCGGATGGGCCG ACACTCCCGGGCTCGCCGTTGGAATGCCGGGTTTCCACAGGGCGCAGGCG GGATCTCTTAGATCCTCCGAAGAGGGGGCCGACACGATCGTCTGGCTGGT GCGTTTATGATGTGGTGGGCGTAGCTCTCAAGCCTTTATATTTCCCCCAT CTGGGCGTTTCGTCTTTATTGCTCCATTACCGAGAAATATTTCATGTAGA TTGACCGGCCTTCGCAAGGCTAGGCAGTGCGCCGCGGGGTCTGTTGTCGT TGACCCGCTTCCTTACCATTAACCCTACCCTCGTATTACACCGGCATTGA TCATTCTTTTATAACATTTTGTCCGCGGCGCCTGAGCCTTTAAAACACCT CCCACCCTCCCGGTAGGTCTTTCGCTTCCTTTGGGAAAAAAGAAGTACTT CGTATATGATTTATCGACTTCCGTTCGGTACCGTGAGTAGATCGCCTTTC GTTACATGCTCTCGGCCGATTGATTCGTCGTCACCAAACTTGTACTACGT GGCAGGCGTGTTCCGAAACGGCTGGAAAGGAAACGGGCAAGTTTTGGTTC GATCGGAAGGCAAGGCGCATGCACATGCCCTTGGCGGGGACTCGGGCGTC GGAAGAGGAAGAGCAGGCGTTGTGGGACGCGGCCGAGAGGCTTTGCTCTG AACGTTGA
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Coding sequence (CDS) from alignment at F-distichus_contig98523:1136..1893-

>mRNA_F-distichus_contig98523.19286.1 ID=mRNA_F-distichus_contig98523.19286.1|Name=mRNA_F-distichus_contig98523.19286.1|organism=Fucus distichus monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at F-distichus_contig98523:1136..1893- (Fucus distichus monoicous)
AGCTACGCTTTCGCTAAGCGCGCTCAGATAACGCTCACCGAACGGTGGGC
AGCTTCGCACAGGAGCGTGTGCTTCAATTCGATGCACCCCGGATGGGCCG
ACACTCCCGGGCTCGCCGTTGGAATGCCGGGTTTCCACAGGGCGCAGGCG
GGATCTCTTAGATCCTCCGAAGAGGGGGCCGACACGATCGTCTGGCTGAG
CTACGCTTTCGCTAAGCGCGCTCAGATAACGCTCACCGAACGGTGGGCAG
CTTCGCACAGGAGCGTGTGCTTCAATTCGATGCACCCCGGATGGGCCGAC
ACTCCCGGGCTCGCCGTTGGAATGCCGGGTTTCCACAGGGCGCAGGCGGG
ATCTCTTAGATCCTCCGAAGAGGGGGCCGACACGATCGTCTGGCTGGCGT
GTTCCGAAACGGCTGGAAAGGAAACGGGCAAGTTTTGGTTCGATCGGAAG
GCAAGGCGCATGCACATGCCCTTGGCGGGGACTCGGGCGTCGGAAGAGGA
AGAGCAGGCGTTGTGGGACGCGGCCGAGAGGCTTTGCTCTGAACGTTGAG
CGTGTTCCGAAACGGCTGGAAAGGAAACGGGCAAGTTTTGGTTCGATCGG
AAGGCAAGGCGCATGCACATGCCCTTGGCGGGGACTCGGGCGTCGGAAGA
GGAAGAGCAGGCGTTGTGGGACGCGGCCGAGAGGCTTTGCTCTGAACGTT
GA
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