mRNA_F-distichus_contig98489.19284.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig98489.19284.1
Unique NamemRNA_F-distichus_contig98489.19284.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig98489.19284.1 vs. uniprot
Match: D8LFY3_ECTSI (EGF-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFY3_ECTSI)

HSP 1 Score: 166 bits (421), Expect = 6.940e-47
Identity = 78/108 (72.22%), Postives = 88/108 (81.48%), Query Frame = 1
Query:  100 SAWLGRHVLVIVALQCLVDLLAVNATCPNHCSGHGTCGSGATCSCNSGWGYAPDCSLRECAKGYAWADKAYATDAAHSEVECSNAGICNRETGVCECFTPFTGAACQR 423
            +A L + + V   LQ    LLA NA CPNHCSGHGTCG GA C+CNSGW +APDCSLR C+KG AWADKAYATD AHSEVECSNAGIC+R+TG+C CF+PFTGAACQR
Sbjct:    3 TASLKKALQVFYVLQASAALLA-NAACPNHCSGHGTCGPGAKCTCNSGWDFAPDCSLRTCSKGVAWADKAYATDIAHSEVECSNAGICDRDTGICSCFSPFTGAACQR 109          
BLAST of mRNA_F-distichus_contig98489.19284.1 vs. uniprot
Match: A0A835ZG45_9STRA (EGF-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG45_9STRA)

HSP 1 Score: 134 bits (338), Expect = 1.230e-36
Identity = 64/101 (63.37%), Postives = 73/101 (72.28%), Query Frame = 1
Query:  121 VLVIVALQCLVDLLAVNATCPNHCSGHGTCGSGATCSCNSGWGYAPDCSLRECAKGYAWADKAYATDAAHSEVECSNAGICNRETGVCECFTPFTGAACQR 423
            +LV+ ALQ         A CPN CSGHGTCG   TC+CN GW  A DCSLR C  G AWADKAYATD AH++VECS AGIC+ ETG C+CFTP+ G+ACQR
Sbjct:    7 LLVLAALQ-----QTATAVCPNFCSGHGTCGPENTCACNDGWTAAVDCSLRNCPLGAAWADKAYATDKAHADVECSGAGICDGETGECQCFTPYVGSACQR 102          
BLAST of mRNA_F-distichus_contig98489.19284.1 vs. uniprot
Match: F0YK13_AURAN (EGF-like domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YK13_AURAN)

HSP 1 Score: 130 bits (328), Expect = 1.030e-35
Identity = 63/93 (67.74%), Postives = 70/93 (75.27%), Query Frame = 1
Query:  148 LVDLLAVN-ATCPNHCSGHGTCGSGATCSCNSGWGYAPDCSLRECAKGYAWADKAYATDAAHSEVECSNAGICNRETGVCECFTPFTGAACQR 423
            L+ LL V  A CPN CSGHG CG+   CSC  G+ YAPDCSLR C+KG AWADKAYA D AHS  ECSNAG+CNR+TG CECF  +TG ACQR
Sbjct:    2 LLALLPVALAQCPNMCSGHGDCGAENVCSCFDGFDYAPDCSLRTCSKGIAWADKAYAVDLAHSMAECSNAGLCNRDTGKCECFDGYTGLACQR 94          
BLAST of mRNA_F-distichus_contig98489.19284.1 vs. uniprot
Match: A0A7S0T0J1_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0T0J1_9STRA)

HSP 1 Score: 133 bits (334), Expect = 2.380e-33
Identity = 60/103 (58.25%), Postives = 74/103 (71.84%), Query Frame = 1
Query:  118 HVLVIVALQCLVDLLAVNATCPNHCSGHGTCGSGATCSCNSGW-GYAPDCSLRECAKGYAWADKAYATDAAHSEVECSNAGICNRETGVCECFTPFTGAACQR 423
            H L+++ L   +++  + + CPN CSGHGTC  G  C C +GW G A DCS R+CA G AWADKAYATD AH   ECSNAGIC+R TG+C+CF  FTG+ACQR
Sbjct:   12 HYLLLIVLLLNINISIIESACPNSCSGHGTCAGGNICQCFTGWNGGAADCSFRQCANGTAWADKAYATDEAHQTTECSNAGICDRSTGLCKCFDGFTGSACQR 114          
BLAST of mRNA_F-distichus_contig98489.19284.1 vs. uniprot
Match: A0A7S3ZWQ5_9STRA (Hypothetical protein n=4 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZWQ5_9STRA)

HSP 1 Score: 132 bits (331), Expect = 5.380e-33
Identity = 61/93 (65.59%), Postives = 69/93 (74.19%), Query Frame = 1
Query:  145 CLVDLLAVNATCPNHCSGHGTCGSGATCSCNSGWGYAPDCSLRECAKGYAWADKAYATDAAHSEVECSNAGICNRETGVCECFTPFTGAACQR 423
            CLV L  +   CPN CSGHG+CG    CSC  G+ YAPDCSLR C+KG AWADKAYA D AHS  ECS+AG+CNR+TG CECF  +TG ACQR
Sbjct:   10 CLVGLPTLLGQCPNMCSGHGSCGPENVCSCFEGFDYAPDCSLRTCSKGAAWADKAYAVDLAHSPSECSSAGLCNRDTGKCECFDGYTGLACQR 102          
BLAST of mRNA_F-distichus_contig98489.19284.1 vs. uniprot
Match: A0A8K1CGE0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CGE0_PYTOL)

HSP 1 Score: 117 bits (293), Expect = 8.620e-28
Identity = 51/86 (59.30%), Postives = 63/86 (73.26%), Query Frame = 1
Query:  166 VNATCPNHCSGHGTCGSGATCSCNSGWGYAPDCSLRECAKGYAWADKAYATDAAHSEVECSNAGICNRETGVCECFTPFTGAACQR 423
            V+ATCPN CSGHGTCG+   C+C++ W  APDCSLR+C  G AW+DKA  T+ AH+  ECSN G+C+   G C CF  +TGAACQR
Sbjct:   13 VSATCPNFCSGHGTCGASNQCTCDTAWSAAPDCSLRKCPSGVAWSDKASTTNKAHATAECSNRGMCDYTKGECMCFNGYTGAACQR 98          
BLAST of mRNA_F-distichus_contig98489.19284.1 vs. uniprot
Match: A0A7S2HHP1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HHP1_9STRA)

HSP 1 Score: 116 bits (290), Expect = 1.070e-27
Identity = 54/95 (56.84%), Postives = 63/95 (66.32%), Query Frame = 1
Query:  139 LQCLVDLLAVNATCPNHCSGHGTCGSGATCSCNSGWGYAPDCSLRECAKGYAWADKAYATDAAHSEVECSNAGICNRETGVCECFTPFTGAACQR 423
            L  L  + AVNA CPN CSG GTCG    C C  G+ Y+ DCS R C    AWADKAYATD AH+E EC+NAG C+R TG+C+C   +TG AC R
Sbjct:   16 LSLLYLIPAVNAQCPNSCSGRGTCGDNNVCDCFDGFEYSADCSQRTCPSAPAWADKAYATDLAHTEAECANAGFCDRSTGLCKCLPGYTGIACNR 110          
BLAST of mRNA_F-distichus_contig98489.19284.1 vs. uniprot
Match: A0A7S1CQ07_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CQ07_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 1.420e-22
Identity = 55/115 (47.83%), Postives = 68/115 (59.13%), Query Frame = 1
Query:  112 GRHVLVIVALQCLVDLLAVNATCPN--HCSGHGTCGSGAT-CSCNSGWGY--------APDCSLRECAKGYAWADKAYATDAAHSEVECSNAGICNRETGVCECFTPFTGAACQR 423
            GR +++ VA+   +   A    C +   C+GHGTC +  T C+C  GWG         APDCS R C  G AWAD A AT+ AH+  ECSNAGIC+R TG C CFT + G ACQR
Sbjct:    8 GRALVLAVAVAAALAGRADAGACVDLGDCNGHGTCNTATTQCACYDGWGSSSDVTTYRAPDCSKRVCPSGNAWADAATATNTAHALAECSNAGICDRTTGKCRCFTGYDGEACQR 122          
BLAST of mRNA_F-distichus_contig98489.19284.1 vs. uniprot
Match: A0A7S1CQY3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CQY3_9STRA)

HSP 1 Score: 100 bits (250), Expect = 5.120e-22
Identity = 66/133 (49.62%), Postives = 76/133 (57.14%), Query Frame = 1
Query:   37 PFPTSDSSRTVRDTFHMAKYRSAWLGRHVLVIVALQCLVDLLA-VNATCPNHCS-GHGTCGSGATCSCNSGWGYAPDCSLRECAKGYAWADK-AYATDAAHSEV-ECSNAGICNRETGVCECFTPFTGAACQR 423
            P  T    R V  T H A           L +V L  +V L A V A CPN CS   GTC +  TC+C SG+   PDCS R C  G AW DK A A D AH+ + ECSNAGICNR+TG CECF PF+G AC+R
Sbjct:   46 PTTTRPVGRAVAATAHFA-----------LALVTLGAVVLLPAGVRAQCPNLCSVTGGTCNADTTCTCFSGF-TGPDCSQRTCETGTAWVDKVATADDDAHNSILECSNAGICNRKTGECECFKPFSGIACER 166          
BLAST of mRNA_F-distichus_contig98489.19284.1 vs. uniprot
Match: A0A7R9YF46_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YF46_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 5.420e-22
Identity = 43/75 (57.33%), Postives = 55/75 (73.33%), Query Frame = 1
Query:  199 HGTCGSGATCSCNSGWGYAPDCSLRECAKGYAWADKAYATDAAHSEVECSNAGICNRETGVCECFTPFTGAACQR 423
            HG+CG+   C+C++ +  APDCS R+C    AW D+A A D AH+ +EC+NAG+CNRE GVCECF  FTG ACQR
Sbjct:    1 HGSCGADNVCACDADFSAAPDCSKRQCPSAAAWFDRATAVDTAHALMECANAGLCNREQGVCECFDGFTGQACQR 75          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig98489.19284.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFY3_ECTSI6.940e-4772.22EGF-like domain-containing protein n=1 Tax=Ectocar... [more]
A0A835ZG45_9STRA1.230e-3663.37EGF-like domain-containing protein n=1 Tax=Tribone... [more]
F0YK13_AURAN1.030e-3567.74EGF-like domain-containing protein (Fragment) n=1 ... [more]
A0A7S0T0J1_9STRA2.380e-3358.25Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A7S3ZWQ5_9STRA5.380e-3365.59Hypothetical protein n=4 Tax=Pelagomonas calceolat... [more]
A0A8K1CGE0_PYTOL8.620e-2859.30Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S2HHP1_9STRA1.070e-2756.84Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S1CQ07_9STRA1.420e-2247.83Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S1CQY3_9STRA5.120e-2249.62Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7R9YF46_9STRA5.420e-2257.33Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig98489contigF-distichus_contig98489:832..1920 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score167.5
Seed ortholog evalue4.3e-39
Seed eggNOG ortholog2880.D8LFY3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of canonical Wnt signaling pathway involved in osteoblast differentiation
EggNOG OGsKOG1225@1,KOG1225@2759
Ec32 ortholog descriptionSecreted EGF-like domain protein
Ec32 orthologEc-05_005030.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size424
Cds size423
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931164.3851407-CDS-F-distichus_contig98489:832..9841622931164.3851407-CDS-F-distichus_contig98489:832..984Fucus distichus monoicousCDSF-distichus_contig98489 833..984 -
1690886186.2995722-CDS-F-distichus_contig98489:832..9841690886186.2995722-CDS-F-distichus_contig98489:832..984Fucus distichus monoicousCDSF-distichus_contig98489 833..984 -
1622931164.4045448-CDS-F-distichus_contig98489:1649..19201622931164.4045448-CDS-F-distichus_contig98489:1649..1920Fucus distichus monoicousCDSF-distichus_contig98489 1650..1920 -
1690886186.3116858-CDS-F-distichus_contig98489:1649..19201690886186.3116858-CDS-F-distichus_contig98489:1649..1920Fucus distichus monoicousCDSF-distichus_contig98489 1650..1920 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig98489.19284.1prot_F-distichus_contig98489.19284.1Fucus distichus monoicouspolypeptideF-distichus_contig98489 833..1920 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig98489.19284.1

>prot_F-distichus_contig98489.19284.1 ID=prot_F-distichus_contig98489.19284.1|Name=mRNA_F-distichus_contig98489.19284.1|organism=Fucus distichus monoicous|type=polypeptide|length=141bp
CQGLLKGVFRRPPFPTSDSSRTVRDTFHMAKYRSAWLGRHVLVIVALQCL
VDLLAVNATCPNHCSGHGTCGSGATCSCNSGWGYAPDCSLRECAKGYAWA
DKAYATDAAHSEVECSNAGICNRETGVCECFTPFTGAACQR
back to top

mRNA from alignment at F-distichus_contig98489:832..1920-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig98489.19284.1 ID=mRNA_F-distichus_contig98489.19284.1|Name=mRNA_F-distichus_contig98489.19284.1|organism=Fucus distichus monoicous|type=mRNA|length=1089bp|location=Sequence derived from alignment at F-distichus_contig98489:832..1920- (Fucus distichus monoicous)
TGCCAAGGGTTACTCAAAGGTGTGTTTCGACGTCCTCCATTCCCGACGTC GGATAGCTCCAGGACGGTACGAGACACATTTCATATGGCGAAATATCGTT CAGCGTGGCTTGGGAGACATGTCCTGGTCATAGTTGCTCTCCAATGTTTG GTGGATCTTTTAGCAGTGAACGCGACGTGTCCGAATCACTGCAGTGGGCA CGGGACGTGCGGATCTGGGGCGACCTGCAGCTGCAACTCGGGTTGGGGTT ACGCTCCGGATTGCTCCCTTCGTGAGTTGGAGGAGCGCCACGAAGAGTAT GATCTCCGCGATGACTCGTCTCTGGTTCGTATGAACATACATACTAATTC TTTCATGGCGACTCTAAACCCTGAATGGCGTGCTGTTTTCTTACGTACTA CTTCAGCTTTTTTTACATGGTTGCTTCTATTTTTCGTACGTTGTGCTCGG ATCAGGCTTTGTCGCGTCCGTTACAGTAGTACTACTGTACATCGTTTTCT GCCTACTTTTTGCCAATGTGTTTAAGCAAGATGCTGGTGTAACATGCGTC ACAATAGTGTTGTGAAACAAATGCTCCAACAACTATTTGGGGCGTCGTCG GTATCGACAACATTTCCCCCTGACTGGGGGATGCTCAGAAGGTCTAGGTA CGTTCTGTATTTTCTTTAAAAATTACTGTACGAGTGTGGTAGGAAGTGCG TCGTATACTTGAGCTGACAGATAATACATCCCTGCTCTGTCATTTCTCCT TGGGGTAAAGGCAAACGGCTACCAGCTACTACCACCCGAACATTTTAAAC ACGAACGAAACAAAGCCTGTGATAACCATGCGTACTTCGATCCATACGAA GAGCTATATTAGCTTTACACCGCTATTTATTTGTACAATAGCTTCCCTCG ATCTACGCTGCGCACGATCATTCGATTGCTTCACAGGTGAATGCGCGAAA GGCTACGCCTGGGCGGACAAAGCTTATGCTACCGACGCCGCACACAGCGA GGTAGAGTGCTCAAACGCGGGGATCTGCAACAGGGAAACTGGAGTCTGCG AATGCTTCACGCCTTTTACAGGGGCAGCGTGCCAACGAG
back to top

Coding sequence (CDS) from alignment at F-distichus_contig98489:832..1920-

>mRNA_F-distichus_contig98489.19284.1 ID=mRNA_F-distichus_contig98489.19284.1|Name=mRNA_F-distichus_contig98489.19284.1|organism=Fucus distichus monoicous|type=CDS|length=846bp|location=Sequence derived from alignment at F-distichus_contig98489:832..1920- (Fucus distichus monoicous)
TGCCAAGGGTTACTCAAAGGTGTGTTTCGACGTCCTCCATTCCCGACGTC
GGATAGCTCCAGGACGGTACGAGACACATTTCATATGGCGAAATATCGTT
CAGCGTGGCTTGGGAGACATGTCCTGGTCATAGTTGCTCTCCAATGTTTG
GTGGATCTTTTAGCAGTGAACGCGACGTGTCCGAATCACTGCAGTGGGCA
CGGGACGTGCGGATCTGGGGCGACCTGCAGCTGCAACTCGGGTTGGGGTT
ACGCTCCGGATTGCTCCCTTCTGCCAAGGGTTACTCAAAGGTGTGTTTCG
ACGTCCTCCATTCCCGACGTCGGATAGCTCCAGGACGGTACGAGACACAT
TTCATATGGCGAAATATCGTTCAGCGTGGCTTGGGAGACATGTCCTGGTC
ATAGTTGCTCTCCAATGTTTGGTGGATCTTTTAGCAGTGAACGCGACGTG
TCCGAATCACTGCAGTGGGCACGGGACGTGCGGATCTGGGGCGACCTGCA
GCTGCAACTCGGGTTGGGGTTACGCTCCGGATTGCTCCCTTCGTGAATGC
GCGAAAGGCTACGCCTGGGCGGACAAAGCTTATGCTACCGACGCCGCACA
CAGCGAGGTAGAGTGCTCAAACGCGGGGATCTGCAACAGGGAAACTGGAG
TCTGCGAATGCTTCACGCCTTTTACAGGGGCAGCGTGCCAACGAGTGAAT
GCGCGAAAGGCTACGCCTGGGCGGACAAAGCTTATGCTACCGACGCCGCA
CACAGCGAGGTAGAGTGCTCAAACGCGGGGATCTGCAACAGGGAAACTGG
AGTCTGCGAATGCTTCACGCCTTTTACAGGGGCAGCGTGCCAACGA
back to top