mRNA_F-distichus_contig9845.19282.1 (mRNA) Fucus distichus monoicous
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Overview
Homology
BLAST of mRNA_F-distichus_contig9845.19282.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE) HSP 1 Score: 163 bits (413), Expect = 2.040e-39 Identity = 159/532 (29.89%), Postives = 238/532 (44.74%), Query Frame = 1
Query: 4 WRKAEETEMLGLVENYVYKQVAR-PKDKLVVGTKMLYT*KIGQDGKVEKYKCRLVAQGF*LVEGVHYTEKYSPTPATASIRMLLAMAVAKDRELRHFDAEQACLKANIDEKIYIEIPRGVPGVSG--------------GSRT------------------TEEGHLRTRTGGEVLDQQVL*RHYGDWIRAG--KCGSVCVTQRR*RRGGDGGGGTRKRHSCARQRPSDKG*IRD*AWTEAHIEGHGRRRVLHGLSHHKEQQGAQVEARPTLVHGVDGKNI*RQEGN*DTGCVRGANALKGGRTTEPGGGGNEEAPVPGGSGGATITRQDIACAVRAVATFCGNLGPAHKKAVMKIL*YLLHTK*WGIAYG-GQGCRLCMEAYSDSGFGAWLDTRRSVSGAVLVLAKGAISWHSRMQEVTASGTSEAEYVALPEVVNEILPRRQEQECMEPSMRVDAVNAFEDNEGAIKLATNRHASRRTKYIDVKHHLMRDASGARKVRVAYVRSEDQHADLLTKPLDMQKFYKHAKFILN 1491
W A E+ GL+ + A+ P V+ + ++ K + GK+ K K RLVA+GF GV Y E +SPT AS R+++A+A + EL H+D EQA +++ +D ++++++P G +SG SRT ++ LR G EV+ + H D + AG V V G R CA R + G I E++I R VL + + + + A PT D +++ EG D +L A TR DI+ AVRAVA +H KA KIL YLL T + + Y D+ F + + RRSVSGA++++A + W S+ Q+ + TSEAEY+A+ + V E L + + PS + ++ EDNEGAI LA N +S R+K+IDV+HH +R+ + + V +V SE+QHAD+LTK L F H F L
Sbjct: 730 WEGAMSAEVEGLIRAGTFTLAAKVPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAI--HVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIE--MSQESYI-----RSVLERFN---VCRTSSIPASPTN----DYRSVMEDEGAGDVPFREVVGSLM---------------------WIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLFEVHRDFALG 1224
BLAST of mRNA_F-distichus_contig9845.19282.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE) HSP 1 Score: 162 bits (411), Expect = 3.060e-39 Identity = 159/532 (29.89%), Postives = 238/532 (44.74%), Query Frame = 1
Query: 4 WRKAEETEMLGLVENYVYKQVAR-PKDKLVVGTKMLYT*KIGQDGKVEKYKCRLVAQGF*LVEGVHYTEKYSPTPATASIRMLLAMAVAKDRELRHFDAEQACLKANIDEKIYIEIPRGVPGVSG--------------GSRT------------------TEEGHLRTRTGGEVLDQQVL*RHYGDWIRAG--KCGSVCVTQRR*RRGGDGGGGTRKRHSCARQRPSDKG*IRD*AWTEAHIEGHGRRRVLHGLSHHKEQQGAQVEARPTLVHGVDGKNI*RQEGN*DTGCVRGANALKGGRTTEPGGGGNEEAPVPGGSGGATITRQDIACAVRAVATFCGNLGPAHKKAVMKIL*YLLHTK*WGIAYG-GQGCRLCMEAYSDSGFGAWLDTRRSVSGAVLVLAKGAISWHSRMQEVTASGTSEAEYVALPEVVNEILPRRQEQECMEPSMRVDAVNAFEDNEGAIKLATNRHASRRTKYIDVKHHLMRDASGARKVRVAYVRSEDQHADLLTKPLDMQKFYKHAKFILN 1491
W A E+ GL+ + A+ P V+ + ++ K + GK+ K K RLVA+GF GV Y E +SPT AS R+++A+A + EL H+D EQA +++ +D ++++++P G +SG SRT ++ LR G EV+ + H D + AG V V G R CA R + G I E++I R VL + + + + A PT D +++ EG D +L A TR DI+ AVRAVA +H KA KIL YLL T + + Y D+ F + + RRSVSGA++++A + W S+ Q+ + TSEAEY+A+ + V E L + + PS + ++ EDNEGAI LA N +S R+K+IDV+HH +R+ + + V +V SE+QHAD+LTK L F H F L
Sbjct: 463 WEGAMSAEVEGLIRAGTFTLAAKVPISCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAI--HVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIE--MSQESYI-----RSVLERFN---VCRTSSIPASPTN----DYRSVMEDEGAGDVPFREVVGSLM---------------------WIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLFEVHRDFGLG 957
BLAST of mRNA_F-distichus_contig9845.19282.1 vs. uniprot
Match: A0A6H5KEZ8_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEZ8_9PHAE) HSP 1 Score: 147 bits (370), Expect = 1.200e-37 Identity = 88/210 (41.90%), Postives = 122/210 (58.10%), Query Frame = 1
Query: 868 ATITRQDIACAVRAVATFCGNLGPAHKKAVMKIL*YLLHTK*WGIAYG-GQGCRLCMEAYSDSGFGAWLDTRRSVSGAVLVLAKGAISWHSRMQEVTASGTSEAEYVALPEVVNEILPRRQEQECMEPSMRVDAVNAFEDNEGAIKLATNRHASRRTKYIDVKHHLMRDASGARKVRVAYVRSEDQHADLLTKPLDMQKFYKHAKFILNV 1494
AT TR DIA AVRAVA +C + H A M IL Y T +GI++ G ++ Y+D+ F + RRSVSG ++ GA+SW SR Q+ T+EAEYVAL EVV IL RQ M P + + + FEDN+GAI+LA N ++ +K+IDV+HH +R+ +++ V +V S Q AD LTK L F H F++N+
Sbjct: 6 ATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGEVVKVILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLSKDAFESHRDFVMNL 215
BLAST of mRNA_F-distichus_contig9845.19282.1 vs. uniprot
Match: A0A6A4CLK4_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=10 Tax=Phytophthora TaxID=4783 RepID=A0A6A4CLK4_9STRA) HSP 1 Score: 153 bits (387), Expect = 2.960e-37 Identity = 139/517 (26.89%), Postives = 237/517 (45.84%), Query Frame = 1
Query: 1 EWRKAEETEMLGLVENYVYKQVARPKDKLVVGTKMLYT*KIGQDGKVEKYKCRLVAQGF*LVEGVHYTEKYSPTP-ATASIRMLLAMAVAKDRELRHFDAEQACLKANIDEKIYIEIPRGVPGVSGGSRTTEEGHLRTRTGGEVLDQQVL*RHYGDWIRAGKCGS-VCVTQRR*RRGGDGGGGTRKRHSC--------ARQRPSDKG*IRD*AWTEAHIEGHGRRRVLHGLSHHKEQQGAQVEARPTLVHGVDGKNI*RQEGN*-DTGCVRGANALKGGRTTEPGGGGNEEA----PVPGGSGG----ATITRQDIACAVRAVATFCGNLGPAHKKAVMKIL*YLLHTK*WGIAYGGQGCRLCMEAYSDSGFGAWLDTRRSVSGAVLVLAKGAISWHSRMQEVTASGTSEAEYVALPEVVNEILPRRQEQECMEPSMRVDAVNAFEDNEGAIKLATNRHASRRTKYIDVKHHLMRDASGARKVRVAYVRSEDQHADLLTKPLDMQKFYKHAKFILNV 1494
+WR+A + E+L N + V R +G + ++ K Q G+V +YK RLVA+GF G+ + E YSP +++R++L++ A + + DA+ A L + + +++Y+E+P G+ G + + ++ + G+ ++ CG+ CV +R + G + C A + + ++D ++ G + + G+ + ++ +PT ++ ++ D C G LK +T PG + A P G T TR DIA V ++ F N H A +++L YL T GI Y G + ++AYSD+ +G LD RRS SG +++ + + S+ Q A ++EAEY+AL V E+L R M R +A +EDN+GAI L N RTK++D++HH + V+V YV +++Q AD+LTK L K KF+ +V
Sbjct: 8 QWREAMDAELLSHERNGTWTLVPRGTASRTIGCRWVFAKKRDQYGRVVRYKARLVAKGFKQKYGIDFFETYSPVANMNSTLRVVLSVCAAYEYRMEQLDADTAFLNSELKDRVYMEVPFGIENARGYQYQLNKAIYGLKQAASAWNKTIHRVFLGNGFKS--CGADQCVYVKRSKNGFI--------YVCLYVDDMIIAAKTSEEIRDVKDALKNAFKMKELGPAKFILGMEIDHDMTAGTLKIKPTRYIDDVVEHFGQENAKPVDNPCAAG---LKLSKTQSPGTDAEQNAMRSKPYRSLIGCLLYITTCTRPDIAFVVTQLSRFLENPEKQHWNAAVRVLRYLKSTLQHGIIYHGGTHTVTLKAYSDADWGTSLDDRRSGSGVMVMTGNAPVVFKSKFQRTVALSSAEAEYMALSLCVQEVLWTRAMLTVMGTLQR-NATTIWEDNQGAIALVHNAGYHARTKHVDIRHHFTTENVERGTVKVEYVDTKNQLADILTKALGT----KTLKFLRDV 506
BLAST of mRNA_F-distichus_contig9845.19282.1 vs. uniprot
Match: H3H572_PHYRM (Uncharacterized protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H572_PHYRM) HSP 1 Score: 156 bits (394), Expect = 6.040e-37 Identity = 137/505 (27.13%), Postives = 235/505 (46.53%), Query Frame = 1
Query: 4 WRKAEETEMLGLVENYVYKQVARPKDKLVVGTKMLYT*KIGQDGKVEKYKCRLVAQGF*LVEGVHYTEKYSPTPATASIRMLLAMAVAKDRELRHFDAEQACLKANIDEKIYIEIPRGVPGVSGGSRTTEEGHLRTRTGGEVLDQQVL*RHYGDWIRAG--KCGS-VCVTQRR*RRGGDGGGGTRKRHS----------CARQRPSDKG*IRD*AWTEAHIEGHGRRRVLHGLSHHKEQQGAQVEARPTLVHGVDGKNI*RQEGN*DTG-CVRGANALK-GGRTTEPGGGGNEEAPVPGGSGG----ATITRQDIACAVRAVATFCGNLGPAHKKAVMKIL*YLLHTK*WGIAYGGQGCRLCMEAYSDSGFGAWLDTRRSVSGAVLVLAKGAISWHSRMQEVTASGTSEAEYVALPEVVNEILPRRQEQECMEPSMRVDAVNAFEDNEGAIKLATNRHASRRTKYIDVKHHLMRDASGARKVRVAYVRSEDQHADLLTKPLDMQK 1461
W KA +E+ +N + V R +G + ++ K + G+V +YK RLVA+GF GV + E YSP SIR++L++ VAK DA+ A L +++ E++++E+P G+ ++ + Q + + +++ G CG+ CV + GT+ + A + + ++ + ++ G + + G+ ++ + + + T +Q+ C G K TT P G T TR D+A V ++ F N G H KA +++L YL TK +GI Y G ++ MEAY+D+ +G+ LD RRSVSG ++++ + + S+ Q A ++EAEY+AL E+L R + + +V A +EDN+GAI LA+N + RTK++D++HH +R+ + V YV +EDQ AD+LTK L ++
Sbjct: 852 WIKAMNSELKAHADNGSWTLVRRTSGARPIGCRWVFAKKRNEHGRVVRYKARLVAKGFKQKFGVDFFETYSPVANMNSIRVVLSVVVAKAYVTEQLDADTAFLNSDLKEQVFMEVPYGILNAEHMMCKLDKAIYGLKQAASAWHQTI----HAVFMKIGFHSCGADQCVYVK----------GTKDNYVYVCLYVDDMIIAAKTNKEIDEVKMALKSAFKMKELGEVKFILGMEIDHDRTASTLMIKQTRYIDDVTSRFNQQDAKAVVNPCESGMKLTKMQSPTTNAEREDMRNKPYRSLIGCLLYITTCTRPDVAYIVTQLSRFLENPGQQHWKAAIRVLRYLKTTKEFGIVYNGNNGKVAMEAYTDADWGSNLDDRRSVSGIMIMVGGAPVIFKSKYQRTVALSSAEAEYMALSLCTQEVLWTRTMLKDLGHE-QVGATQVWEDNQGAIALASNAGYNARTKHVDIRHHFIRENVARDIILVGYVGTEDQLADMLTKALGTKR 1341
BLAST of mRNA_F-distichus_contig9845.19282.1 vs. uniprot
Match: A0A2N9FUY1_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9FUY1_FAGSY) HSP 1 Score: 152 bits (384), Expect = 1.350e-36 Identity = 142/502 (28.29%), Postives = 221/502 (44.02%), Query Frame = 1
Query: 1 EWRKAEETEMLGLVENYVYKQVARPKDKLVVGTKMLYT*KIGQDGKVEKYKCRLVAQGF*LVEGVHYTEKYSPTPATASIRMLLAMAVAKDRELRHFDAEQACLKANIDEKIYIEIPRGVPGVSGGSRTTEEGHLR--TRTGGEVLDQQVL*RHYGDWIRAGKCGSVCVTQRR*RRGGDGGGGTRKRHSCARQRPSDKG*IRD*AWTEAHIEGHGRRRVLHGLSHHKEQQGAQVEARPTLVHGVDGKNI*RQEGN*DTGCVRGANALKGGRTTEPGGGGNEEAPVPGGSGGATI------TRQDIACAVRAVATFCGNLGPAHKKAVMKIL*YLLHTK*WGIAYGGQGCRLCMEAYSDSGFGAWLDTRRSVSGAVLVLAKGAISWHSRMQEVTASGTSEAEYVALPEVVNE-ILPRRQEQECMEPSMRVDAVNAFEDNEGAIKLATNRHASRRTKYIDVKHHLMRDASGARKVRVAYVRSEDQHADLLTKPLDMQKFYKHAK 1479
EW A + EM + +N V++ V P +G K + K DG +++YK RLVA+G+ EG+ Y + +SP ASIR++L++ +D EL D + A L +DE+IY+ P G + EE H R+ +L +L + D + G VT K+ + D G + + R + L LS QG ++ H + K I + + GC + + N+ + VP S ++ TR DI AV V+ + N GPAH +AV +IL YL T + Y G RL YSD+ + + D R+S SG +L GA+SW S+ Q A T E+EYVA V E + RR Q + DAV + D+ A+ A + + K+I++++H +RD +V + ++ + AD LTKP+ F+ H K
Sbjct: 86 EWMTAMQEEMSSMDKNNVWELVDLPPGHKTIGNKWVLKVKRKADGSIDRYKARLVAKGYTQREGIDYEDTFSPVVRFASIRLILSIVAKQDLELFQMDVKTAFLNGELDEEIYMAQPAGFEAKGHERKMIEEDHCMYLKRSKRSIL---ILSLYVDDILLVGNDMDSIVTT--------------KKWLSSTFEMKDMGEANFVLGVKITRD---RSKKLLSLS-----QGTYIKKILERFHMHNSKPI---DTPMEKGCTLSLDQCPKNDEEK-----NQMSKVPYASAIRSLMYAMLCTRPDICFAVGMVSRYQSNPGPAHWRAVKRILRYLRGTSDHALCYHGGDLRL--TGYSDADWASDKDERKSTSGYAFILGGGAVSWCSKKQSCIALSTMESEYVACSAAVQEAVWLRRFLQRLGVTAHAEDAVLLYSDSTSALAYAKDPKYHGKAKHIELRYHYIRDMVSQGEVILQHISTGSMVADPLTKPIARDLFFSHTK 552
BLAST of mRNA_F-distichus_contig9845.19282.1 vs. uniprot
Match: A0A2N9GH76_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GH76_FAGSY) HSP 1 Score: 154 bits (390), Expect = 1.820e-36 Identity = 140/512 (27.34%), Postives = 222/512 (43.36%), Query Frame = 1
Query: 1 EWRKAEETEMLGLVENYVYKQVARPKDKLVVGTKMLYT*KIGQDGKVEKYKCRLVAQGF*LVEGVHYTEKYSPTPATASIRMLLAMAVAKDRELRHFDAEQACLKANIDEKIYIEIPRGVPGVSGGSRTTEEGHL--RTRTGGEVLDQQVL*RHYGDWIRAGKCGSVCVTQRR*RRGGDGGGGTRKRHSCARQRPSDKG*IRD*AWTEAHIE--GHGRRRVLHGLSHHKE--------QQGAQVEARPTLVHGVDGKNI*RQEGN*DTGCVRGANALKGGRTTEPGGGGNEEAPVPGGSGGATI------TRQDIACAVRAVATFCGNLGPAHKKAVMKIL*YLLHTK*WGIAYGGQGCRLCMEAYSDSGFGAWLDTRRSVSGAVLVLAKGAISWHSRMQEVTASGTSEAEYVALPEVVNE-ILPRRQEQECMEPSMRVDAVNAFEDNEGAIKLATNRHASRRTKYIDVKHHLMRDASGARKVRVAYVRSEDQHADLLTKPLDMQKFYKHAK 1479
EW A + EM + +N V++ V P + +G K + K DG +++YK RLVA+G+ EG+ Y + +SP ASIR++L++ +D EL D + A L +DE+IY+ P G + EE H R+ +L +L + D + AG VT ++ W + E G + G+ ++ QG ++ H + K I + + GC + + N+ + VP S ++ TR DI AV V+ + N GPAH +AV +IL YL T + Y G RL YSD+ + + D R+S SG +L GA+SW S+ Q A T E+EYVA V E + RR Q + DAV + D+ A+ A + + K+I++++H ++D KV + ++ + AD LTKP+ F+ H K
Sbjct: 661 EWMTAMQEEMSSMDKNNVWELVDLPPGRKTIGNKWVLKVKRKADGSIDRYKARLVAKGYTQREGIDYEDTFSPVVRFASIRLILSIVAKQDLELFQMDVKTAFLNGELDEEIYMAQPAGFEAKGHERKMIEEDHCVYLKRSKRSIL---ILSLYVDDILLAGNDMDSIVTTKK--------------------------------WLSSTFEMKDMGEANFVLGVKITRDCSKKLLSLSQGTYIKKILERFHMHNSKPI---DTPMEKGCTLSLDQCPKNDEEK-----NQMSKVPYASAIGSLMYAMLCTRPDICFAVGMVSRYQSNPGPAHWRAVKRILRYLRGTSDHALCYHGGDLRL--TGYSDADWASDKDERKSTSGYAFILGGGAVSWCSKKQSCIALSTMESEYVACSAAVQEAVWLRRFLQRLGVTAHAEDAVLLYSDSTSALAYAKDPKYHGKAKHIELRYHYIQDMVSQGKVILQHISTSSMVADPLTKPIARDLFFSHTK 1127
BLAST of mRNA_F-distichus_contig9845.19282.1 vs. uniprot
Match: A0A2N9HQ47_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HQ47_FAGSY) HSP 1 Score: 154 bits (389), Expect = 2.370e-36 Identity = 143/502 (28.49%), Postives = 223/502 (44.42%), Query Frame = 1
Query: 1 EWRKAEETEMLGLVENYVYKQVARPKDKLVVGTKMLYT*KIGQDGKVEKYKCRLVAQGF*LVEGVHYTEKYSPTPATASIRMLLAMAVAKDRELRHFDAEQACLKANIDEKIYIEIPRGVPGVSGGSRTTEEGHL--RTRTGGEVLDQQVL*RHYGDWIRAGKCGSVCVTQRR*RRGGDGGGGTRKRHSCARQRPSDKG*IRD*AWTEAHIEGHGRRRVLHGLSHHKEQQGAQVEARPTLVHGVDGKNI*RQEGN*DTGCVRGANALKGGRTTEPGGGGNEEAPVPGGSGGATI------TRQDIACAVRAVATFCGNLGPAHKKAVMKIL*YLLHTK*WGIAYGGQGCRLCMEAYSDSGFGAWLDTRRSVSGAVLVLAKGAISWHSRMQEVTASGTSEAEYVALPEVVNE-ILPRRQEQECMEPSMRVDAVNAFEDNEGAIKLATNRHASRRTKYIDVKHHLMRDASGARKVRVAYVRSEDQHADLLTKPLDMQKFYKHAK 1479
EW A + EM + +N V++ V P + +G K + K DG +++YK RLVA+G+ EG+ Y + +SP ASIR++L++ +D EL D + A L +DE+IY+ P G + EE H R+ +L +L + D + AG VT K+ + D G + + R + L LS QG ++ H + K I + + GC + + N+ + VP S ++ TR DI AV V+ + N GPAH +AV +IL YL T + Y G RL YSD+ + + D R+S SG +L GA+SW S+ Q A T E+EYVA V E + RR Q + DAV + D+ A+ A + + K+I++++H +RD +V + ++ + AD LTKP+ F+ H K
Sbjct: 600 EWMTAMQEEMSSMDKNNVWELVDLPPGRKTIGNKWVLKVKRKADGSIDRYKARLVAKGYTQREGIDYEDTFSPVVRFASIRLILSIVAKQDLELFQMDVKTAFLNGELDEEIYMAQPEGFEVKGHERKMIEEDHCVYLKRSKRSIL---ILSLYVDDILLAGNDMDSIVTT--------------KKWLSSTFEMKDMGEANFVLGVKITRD---RSKKLLSLS-----QGTYIKKILERFHMHNSKPI---DTPMEKGCTLSLDQCPKNDEEK-----NQMSKVPYASAIGSLMYAMLCTRPDICFAVGMVSRYQSNPGPAHWRAVKRILRYLRGTSDHALCYHGGDLRL--TGYSDADWASDKDERKSTSGYAFILGGGAVSWCSKKQSCIALSTMESEYVACSAAVQEAVWLRRFLQRLGVTAHAEDAVLLYSDSTSALAYAKDPKYHGKAKHIELRYHYIRDMVSQGEVILQHISTGSMVADPLTKPIARDLFFSHTK 1066
BLAST of mRNA_F-distichus_contig9845.19282.1 vs. uniprot
Match: A0A6A3JPU3_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3JPU3_9STRA) HSP 1 Score: 152 bits (384), Expect = 6.790e-36 Identity = 135/505 (26.73%), Postives = 228/505 (45.15%), Query Frame = 1
Query: 1 EWRKAEETEMLGLVENYVYKQVARPKDKLVVGTKMLYT*KIGQDGKVEKYKCRLVAQGF*LVEGVHYTEKYSPTPATASIRMLLAMAVAKDRELRHFDAEQACLKANIDEKIYIEIPRGVPGVSGGSRTTEEGHLRTRTGGEVLDQQVL*RHYGDWIRAGKCGS-VCVTQRR*RRGGDGGGGTRKRHSC--------ARQRPSDKG*IRD*AWTEAHIEGHGRRRVLHGLSHHKEQQGAQVEARPT-----LVHGVDGKNI*RQE--------GN*DTGCVRGANALKGGRTTEPGGGGNEEAPVPGGSGGATITRQDIACAVRAVATFCGNLGPAHKKAVMKIL*YLLHTK*WGIAYGGQGCRLCMEAYSDSGFGAWLDTRRSVSGAVLVLAKGAISWHSRMQEVTASGTSEAEYVALPEVVNEILPRRQEQECMEPSMRVDAVNAFEDNEGAIKLATNRHASRRTKYIDVKHHLMRDASGARKVRVAYVRSEDQHADLLTKPL 1449
+WR+A + E+L N + V R +G + ++ K Q G+V +YK RLVA+GF G+ + E YSP SIR+++++ A + + DA+ A L + + +++Y+E+P G+ + + ++ + G+ ++ CG+ CV +R + G + C A + D ++D ++ G + + G+ + ++ + T L ++ RQE G GC+ T TR DIA V ++ F N G H A +++L YL T+ GI Y G + ++AYSD+ +G LD RRSVSG ++++ + + S+ Q A ++EAEY+AL V E+L R M R +A +EDN+GAI LA N RTK++D++HH +R+ V+V YV +++Q AD+LTK L
Sbjct: 294 QWREAMDAELLSHERNGTWTLVPRGTANRTIG-RWVFAKKRDQYGRVVRYKARLVAKGFKQKYGIDFFETYSPVANMNSIRVVVSVCAAYEYRMEQLDADTAFLNSELKDRVYMEVPFGIENARDYQCQLNKAIYGLKQAASAWNKTIHRVFLGNGFKS--CGADQCVYVKRSKNGFI--------YVCLYVDDMIIAAKTSEDIREVKDALKNALKMKELGPAKFIVGMEIDHDMTAGTLKIKQTRYIDDLASSCRRRS--RQERMQSRTQCGRNLIGCLLYIT---------------------------TCTRPDIAFVVTQLSRFLENPGQQHWNAAVRVLRYLKSTRQHGIIYQGGTHSVTLKAYSDADWGTNLDDRRSVSGVMVMIGNAPVVFKSKFQRTVALSSAEAEYMALSLCVQEVLWTRAMLTDMGTLQR-NATTIWEDNQGAIALAQNAGYHARTKHVDIRHHFIRENVKRGTVKVEYVDTKNQLADILTKAL 757
BLAST of mRNA_F-distichus_contig9845.19282.1 vs. uniprot
Match: A0A2N9IFW4_FAGSY (CCHC-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IFW4_FAGSY) HSP 1 Score: 152 bits (384), Expect = 1.000e-35 Identity = 153/503 (30.42%), Postives = 220/503 (43.74%), Query Frame = 1
Query: 4 WRKAEETEMLGLVENYVYKQVARPKDKLVVGTKMLYT*KIGQDGKVEKYKCRLVAQGF*LVEGVHYTEKYSPTPATASIRMLLAMAVAKDRELRHFDAEQACLKANIDEKIYIEIPRGVPGVSGGSRTTEEGHLRTRTGGEVLDQQVL*RHYGDWIRAGKCGSVCVTQRR*RRGGDGGGGTRKRHSCARQRPSDKG*IRD*AWTEAHIEG----HGRRRVLHGLSHHKEQQGAQVEARPTLVHGVDGKNI*RQEGN*DTGCVRGANALKGGRTTEPGGGGNEE---APVPGGSGGATI----TRQDIACAVRAVATFCGNLGPAHKKAVMKIL*YLLHTK*WGIAYGGQGCRLCMEAYSDSGFGAWLDTRRSVSGAVLVLAKGAISWHSRMQEVTASGTSEAEYVALPEVVNE-ILPRRQEQEC-MEPSMRVDAVNAFEDNEGAIKLATNRHASRRTKYIDVKHHLMRDASGARKVRVAYVRSEDQHADLLTKPLDMQKFYKH 1473
W+KA E+EM + N V+ V +P+ +G K +Y K+G GKVE YK RLVA+G+ G+ Y E +SP SIR+LL++A D E+ D + A L NI E+IY++ P G H+ W R + S K + D G ++I G R++ L GLS + ++ AR ++ G + R G N +T E E+ P G TR DI AV V+ + N GP H AV IL YL TK + + +G + L ++ Y+DS F + +D R+S+SG V L KGAISW S Q+ TA T+EAEY+A E E + R+ QE + PS+ + DN GAI A A +RTK+I+ + HL+ D V + ++ S + AD TK L + F KH
Sbjct: 563 WKKAMESEMDSMYTNQVWTLVDKPEGIKPIGCKWIYKRKLGPTGKVETYKARLVAKGYTQKVGIDYEETFSPVAMLKSIRILLSIAAHYDYEIWQMDVKTAFLNGNIREEIYMDQPVGF-------------HI-------------------SWARIKRAMSSI-----------------KMWLSSHFAMKDLG-------EASYILGIKLFRDRKKRLLGLS--QVNYIDKILARFSMQDSKKGFSPFRH------GVHLSKNMCP--KTQEE----REKMRNCPYASAVGSLMYAMLCTRPDICYAVSIVSRYQSNPGPEHWTAVKHILKYLNRTKHYFLVFGSKD--LNIQGYTDSNFQSDIDDRKSISGFVFTLGKGAISWRSCKQDTTADSTTEAEYIAASEAAKEAVWIRKFIQELGVVPSIE-SPIKIHCDNNGAIANAVEPRAHKRTKHIERRFHLIHDIIHRGDVEITHIASANNVADPFTKALPQKVFEKH 992 The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig9845.19282.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-distichus_contig9845.19282.1 >prot_F-distichus_contig9845.19282.1 ID=prot_F-distichus_contig9845.19282.1|Name=mRNA_F-distichus_contig9845.19282.1|organism=Fucus distichus monoicous|type=polypeptide|length=156bp MEAYSDSGFGAWLDTRRSVSGAVLVLAKGAISWHSRMQEVTASGTSEAEYback to top mRNA from alignment at F-distichus_contig9845:8485..9984- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-distichus_contig9845.19282.1 ID=mRNA_F-distichus_contig9845.19282.1|Name=mRNA_F-distichus_contig9845.19282.1|organism=Fucus distichus monoicous|type=mRNA|length=1500bp|location=Sequence derived from alignment at F-distichus_contig9845:8485..9984- (Fucus distichus monoicous)back to top Coding sequence (CDS) from alignment at F-distichus_contig9845:8485..9984- >mRNA_F-distichus_contig9845.19282.1 ID=mRNA_F-distichus_contig9845.19282.1|Name=mRNA_F-distichus_contig9845.19282.1|organism=Fucus distichus monoicous|type=CDS|length=936bp|location=Sequence derived from alignment at F-distichus_contig9845:8485..9984- (Fucus distichus monoicous)back to top |