mRNA_F-distichus_contig98325.19271.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig98325.19271.1
Unique NamemRNA_F-distichus_contig98325.19271.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig98325.19271.1 vs. uniprot
Match: D7FS58_ECTSI (Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS58_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 2.050e-12
Identity = 30/36 (83.33%), Postives = 32/36 (88.89%), Query Frame = 1
Query:    1 KVAYFSSQGPTVDDGRIKPDVIAPGYHLFSASVGRD 108
            +VAYFSSQGPTVDD RIKPDV+APGYHLFSAS   D
Sbjct:  461 EVAYFSSQGPTVDDNRIKPDVVAPGYHLFSASAKPD 496          
BLAST of mRNA_F-distichus_contig98325.19271.1 vs. uniprot
Match: A0A835YK17_9STRA (Subtilisin (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK17_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 2.720e-9
Identity = 25/32 (78.12%), Postives = 26/32 (81.25%), Query Frame = 1
Query:    4 VAYFSSQGPTVDDGRIKPDVIAPGYHLFSASV 99
            VAYFSSQGP   DGRIKPDV+APGYH FSA  
Sbjct:  292 VAYFSSQGPLAGDGRIKPDVVAPGYHTFSAQA 323          
BLAST of mRNA_F-distichus_contig98325.19271.1 vs. uniprot
Match: A0A835Z5P2_9STRA (Subtilisin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5P2_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.290e-8
Identity = 24/32 (75.00%), Postives = 26/32 (81.25%), Query Frame = 1
Query:    4 VAYFSSQGPTVDDGRIKPDVIAPGYHLFSASV 99
            VAYFSSQGPT  DGRIKPD++APGYH  SA  
Sbjct:  601 VAYFSSQGPTPGDGRIKPDILAPGYHTVSAEA 632          
BLAST of mRNA_F-distichus_contig98325.19271.1 vs. uniprot
Match: A0A831YCX0_9AQUI (Peptidase_S8 domain-containing protein n=1 Tax=Sulfurihydrogenibium azorense TaxID=309806 RepID=A0A831YCX0_9AQUI)

HSP 1 Score: 52.8 bits (125), Expect = 6.890e-7
Identity = 23/34 (67.65%), Postives = 28/34 (82.35%), Query Frame = 1
Query:    1 KVAYFSSQGPTVDDGRIKPDVIAPGYHLFSASVG 102
            K+AYFSS+GPT  DGRIKPD+ APGY++ SA  G
Sbjct:  118 KIAYFSSRGPT-RDGRIKPDITAPGYYVLSALAG 150          
BLAST of mRNA_F-distichus_contig98325.19271.1 vs. uniprot
Match: A0A6H5JBB4_9PHAE (Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBB4_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 1.040e-6
Identity = 24/38 (63.16%), Postives = 31/38 (81.58%), Query Frame = 1
Query:    1 KVAYFSSQGPTVDDGRIKPDVIAPGYHLFSASVGRDTS 114
            +V+ FSS GPT DD RIKPD++APG+++FSAS G D S
Sbjct:  757 EVSDFSSMGPTTDD-RIKPDILAPGHYIFSASNGGDGS 793          
BLAST of mRNA_F-distichus_contig98325.19271.1 vs. uniprot
Match: A0A7S2I989_9STRA (Subtilisin n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I989_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 1.420e-6
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 1
Query:    1 KVAYFSSQGPTVDDGRIKPDVIAPGYHLFSASVGRD 108
            K+AYFSS+GPT  DGR KPDV+APG  L SAS G++
Sbjct:  188 KIAYFSSRGPT-QDGRTKPDVLAPGDSLTSASAGKN 222          
BLAST of mRNA_F-distichus_contig98325.19271.1 vs. uniprot
Match: A0A7S2SR84_9STRA (Subtilisin (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SR84_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 1.900e-6
Identity = 24/38 (63.16%), Postives = 31/38 (81.58%), Query Frame = 1
Query:    4 VAYFSSQGPTVDDGRIKPDVIAPGYHLFSASVGRDTSE 117
            VAYFSS GPT +DGRIKPDV+APG+++ SA+    +SE
Sbjct:  223 VAYFSSAGPT-EDGRIKPDVVAPGFYVVSAAAVGYSSE 259          
BLAST of mRNA_F-distichus_contig98325.19271.1 vs. uniprot
Match: A0A836UBN0_9BACT (Peptidase_S8 domain-containing protein (Fragment) n=1 Tax=Candidatus Handelsmanbacteria bacterium TaxID=2099671 RepID=A0A836UBN0_9BACT)

HSP 1 Score: 49.3 bits (116), Expect = 2.540e-6
Identity = 23/39 (58.97%), Postives = 28/39 (71.79%), Query Frame = 1
Query:    4 VAYFSSQGPTVDDGRIKPDVIAPGYHLFSASVGRDTSEA 120
            +AYFSS+GPT D GRIKPDV+APG  + + S G   S A
Sbjct:    5 LAYFSSRGPTAD-GRIKPDVVAPGQRIVTVSGGSSGSSA 42          
BLAST of mRNA_F-distichus_contig98325.19271.1 vs. uniprot
Match: A0A4V2YNC6_9ACTN (Peptidase_S8 domain-containing protein n=1 Tax=Kribbella antibiotica TaxID=190195 RepID=A0A4V2YNC6_9ACTN)

HSP 1 Score: 51.2 bits (121), Expect = 2.660e-6
Identity = 21/39 (53.85%), Postives = 28/39 (71.79%), Query Frame = 1
Query:    1 KVAYFSSQGPTVDDGRIKPDVIAPGYHLFSASVGRDTSE 117
            K+A FSS+GP VDDG +KPDV APG ++ +A  G  T +
Sbjct:  388 KLASFSSRGPGVDDGAVKPDVTAPGVNIMAAKAGGSTGD 426          
BLAST of mRNA_F-distichus_contig98325.19271.1 vs. uniprot
Match: A0A0H5QNY8_9EUKA (Subtilisin (Fragment) n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5QNY8_9EUKA)

HSP 1 Score: 51.2 bits (121), Expect = 2.670e-6
Identity = 22/30 (73.33%), Postives = 26/30 (86.67%), Query Frame = 1
Query:    4 VAYFSSQGPTVDDGRIKPDVIAPGYHLFSA 93
            +AYFSS GPT  DGRIKPDV+APGY+ +SA
Sbjct:   59 LAYFSSMGPT-SDGRIKPDVVAPGYYFYSA 87          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig98325.19271.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FS58_ECTSI2.050e-1283.33Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A835YK17_9STRA2.720e-978.13Subtilisin (Fragment) n=1 Tax=Tribonema minus TaxI... [more]
A0A835Z5P2_9STRA1.290e-875.00Subtilisin n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
A0A831YCX0_9AQUI6.890e-767.65Peptidase_S8 domain-containing protein n=1 Tax=Sul... [more]
A0A6H5JBB4_9PHAE1.040e-663.16Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 Tax... [more]
A0A7S2I989_9STRA1.420e-666.67Subtilisin n=1 Tax=Helicotheca tamesis TaxID=37404... [more]
A0A7S2SR84_9STRA1.900e-663.16Subtilisin (Fragment) n=1 Tax=Rhizochromulina mari... [more]
A0A836UBN0_9BACT2.540e-658.97Peptidase_S8 domain-containing protein (Fragment) ... [more]
A0A4V2YNC6_9ACTN2.660e-653.85Peptidase_S8 domain-containing protein n=1 Tax=Kri... [more]
A0A0H5QNY8_9EUKA2.670e-673.33Subtilisin (Fragment) n=1 Tax=Spongospora subterra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig98325contigF-distichus_contig98325:1777..1899 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size123
Cds size123
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931162.9478452-CDS-F-distichus_contig98325:1776..18991622931162.9478452-CDS-F-distichus_contig98325:1776..1899Fucus distichus monoicousCDSF-distichus_contig98325 1777..1899 +
1690886185.6087763-CDS-F-distichus_contig98325:1776..18991690886185.6087763-CDS-F-distichus_contig98325:1776..1899Fucus distichus monoicousCDSF-distichus_contig98325 1777..1899 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig98325.19271.1prot_F-distichus_contig98325.19271.1Fucus distichus monoicouspolypeptideF-distichus_contig98325 1777..1899 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig98325.19271.1

>prot_F-distichus_contig98325.19271.1 ID=prot_F-distichus_contig98325.19271.1|Name=mRNA_F-distichus_contig98325.19271.1|organism=Fucus distichus monoicous|type=polypeptide|length=41bp
KVAYFSSQGPTVDDGRIKPDVIAPGYHLFSASVGRDTSEA*
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mRNA from alignment at F-distichus_contig98325:1777..1899+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig98325.19271.1 ID=mRNA_F-distichus_contig98325.19271.1|Name=mRNA_F-distichus_contig98325.19271.1|organism=Fucus distichus monoicous|type=mRNA|length=123bp|location=Sequence derived from alignment at F-distichus_contig98325:1777..1899+ (Fucus distichus monoicous)
AAGGTGGCCTACTTCTCGTCGCAGGGCCCCACCGTCGACGACGGGCGGAT AAAGCCGGACGTCATCGCTCCTGGCTACCACCTTTTCTCCGCTTCGGTAG GTCGTGATACTAGCGAGGCGTAG
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Coding sequence (CDS) from alignment at F-distichus_contig98325:1777..1899+

>mRNA_F-distichus_contig98325.19271.1 ID=mRNA_F-distichus_contig98325.19271.1|Name=mRNA_F-distichus_contig98325.19271.1|organism=Fucus distichus monoicous|type=CDS|length=246bp|location=Sequence derived from alignment at F-distichus_contig98325:1777..1899+ (Fucus distichus monoicous)
AAGGTGGCCTACTTCTCGTCGCAGGGCCCCACCGTCGACGACGGGCGGAT
AAAGCCGGACGTCATCGCTCCTGGCTACCACCTTTTCTCCGCTTCGGTAG
GTCGTGATACTAGCGAGGCGTAGAAGGTGGCCTACTTCTCGTCGCAGGGC
CCCACCGTCGACGACGGGCGGATAAAGCCGGACGTCATCGCTCCTGGCTA
CCACCTTTTCTCCGCTTCGGTAGGTCGTGATACTAGCGAGGCGTAG
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