mRNA_F-distichus_contig9826.19264.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig9826.19264.1
Unique NamemRNA_F-distichus_contig9826.19264.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig9826.19264.1 vs. uniprot
Match: A0A6H5JEY2_9PHAE (HTH CENPB-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEY2_9PHAE)

HSP 1 Score: 187 bits (476), Expect = 1.310e-54
Identity = 87/121 (71.90%), Postives = 103/121 (85.12%), Query Frame = 3
Query:    3 VVACCNTTGSLMVPLAAISTAKSPPIFRHLSKSPTPYYAQPSAWLDSSICELWFHEVFVPFVKRTNGRKVALVWDNCSGHIIRNNDPK*ITINFLPPNVTSVYQPCDQGILHALECQYKTE 365
            VVACCNTTGSL VPLA ISTAK+P +FRH+ +SP PYY+Q SAWLDS++C+ WF EVFVPFVK+T G+KV L+WDNC GH I+N+DP+ I I FLPPNVTSV+QP D GIL AL+CQYKTE
Sbjct:  174 VVACCNTTGSLKVPLAVISTAKNPMVFRHIRRSPIPYYSQQSAWLDSTLCQRWFDEVFVPFVKKTTGKKVVLLWDNCPGHKIKNDDPQ-IIIIFLPPNVTSVFQPMDMGILFALKCQYKTE 293          
BLAST of mRNA_F-distichus_contig9826.19264.1 vs. uniprot
Match: A0A6H5JV64_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV64_9PHAE)

HSP 1 Score: 187 bits (476), Expect = 9.090e-54
Identity = 87/121 (71.90%), Postives = 103/121 (85.12%), Query Frame = 3
Query:    3 VVACCNTTGSLMVPLAAISTAKSPPIFRHLSKSPTPYYAQPSAWLDSSICELWFHEVFVPFVKRTNGRKVALVWDNCSGHIIRNNDPK*ITINFLPPNVTSVYQPCDQGILHALECQYKTE 365
            VVACCNTTGSL VPLA ISTAK+P +FRH+ +SP PYY+Q SAWLDS++C+ WF EVFVPFVK+T G+KV L+WDNC GH I+N+DP+ I I FLPPNVTSV+QP D GIL AL+CQYKTE
Sbjct:  379 VVACCNTTGSLKVPLAVISTAKNPMVFRHIRRSPIPYYSQQSAWLDSTLCQRWFDEVFVPFVKKTTGKKVVLLWDNCPGHKIKNDDPQ-IIIIFLPPNVTSVFQPMDMGILFALKCQYKTE 498          
BLAST of mRNA_F-distichus_contig9826.19264.1 vs. uniprot
Match: A0A6H5JYC6_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYC6_9PHAE)

HSP 1 Score: 179 bits (453), Expect = 6.970e-52
Identity = 84/120 (70.00%), Postives = 97/120 (80.83%), Query Frame = 3
Query:    3 VVACCNTTGSLMVPLAAISTAKSPPIFRHLSKSPTPYYAQPSAWLDSSICELWFHEVFVPFVKRTNGRKVALVWDNCSGHIIRNNDPK*ITINFLPPNVTSVYQPCDQGILHALECQYKT 362
            VVACCNTTGSL VPLA I TAK P +FRH+ K P PYYAQ SAWLD+SIC+ WF EVFVPFVK   G+KVAL+W+NC GH I+N+DP+ I I FLPP VTSV+QP D G+L AL+CQYKT
Sbjct:  341 VVACCNTTGSLKVPLAVIHTAKDPMVFRHVRKPPCPYYAQQSAWLDASICQRWFDEVFVPFVKENTGKKVALLWNNCPGHEIKNDDPQ-IVIIFLPPKVTSVFQPMDMGVLFALKCQYKT 459          
BLAST of mRNA_F-distichus_contig9826.19264.1 vs. uniprot
Match: A0A6H5JNS8_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS8_9PHAE)

HSP 1 Score: 173 bits (438), Expect = 8.570e-49
Identity = 84/124 (67.74%), Postives = 98/124 (79.03%), Query Frame = 3
Query:    3 VVACCNTTGSLMVP---LAAISTAKSPPIFRHLSKSPTPYYAQPSAWLDSSICELWFHEVFVPFVKRTNGRKVALVWDNCSGHIIRNNDPK*ITINFLPPNVTSVYQPCDQGILHALECQYKTE 365
            VVACCNTTGSLMVP   LA IST+K P +FRH+ K P PY+AQ SAWLD++IC+ WF EVFVPFVK    +KVAL+WDNC GH I++NDP+ I I FLPPNV SVYQP + GIL  L+CQYKTE
Sbjct:  208 VVACCNTTGSLMVPFXPLAVISTSKKPMVFRHVRKPPCPYFAQSSAWLDAAICQRWFDEVFVPFVKGKTSKKVALLWDNCPGHKIKSNDPQ-IVIIFLPPNVNSVYQPMNMGILFVLKCQYKTE 330          
BLAST of mRNA_F-distichus_contig9826.19264.1 vs. uniprot
Match: A0A6H5KA74_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA74_9PHAE)

HSP 1 Score: 173 bits (438), Expect = 3.790e-48
Identity = 84/123 (68.29%), Postives = 99/123 (80.49%), Query Frame = 3
Query:    3 VVACCNTTGSLMVPLAAISTAKSPPIFRHLSKSPTPY--YAQPSAWLDSSICELWFHEVFVPFVKRTNGRKVALVWDNCSGHIIRNNDPK*ITINFLPPNVTSVYQPCDQGILHALECQYKTE 365
            VVACCNTTGSL VPLA I TAK P +FR + K   PY  YAQ SAWLDS++C+ WF EVFVPFVK+T G+K+AL+WDNC GH I+N+DP+ I I FLPPNVTSV+QP D GIL AL+CQYKT+
Sbjct:  458 VVACCNTTGSLKVPLAIIHTAKDPMVFRQVRKPACPYLYYAQKSAWLDSALCQRWFDEVFVPFVKKTTGKKMALLWDNCPGHRIKNDDPQ-IVIIFLPPNVTSVFQPMDMGILFALKCQYKTK 579          
BLAST of mRNA_F-distichus_contig9826.19264.1 vs. uniprot
Match: A0A6H5JEK6_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEK6_9PHAE)

HSP 1 Score: 168 bits (426), Expect = 3.690e-47
Identity = 81/121 (66.94%), Postives = 94/121 (77.69%), Query Frame = 3
Query:    3 VVACCNTTGSLMVPLAAISTAKSPPIFRHLSKSPTPYYAQPSAWLDSSICELWFHEVFVPFVKRTNGRKVALVWDNCSGHIIRNNDPK*ITINFLPPNVTSVYQPCDQGILHALECQYKTE 365
            VV CCNTTGSLMVPLA IST+K+  IFRH+ K P PY+AQ SAWLD++IC+ WF EVFV FVK    +KVAL+WDNC GH I +NDP+ I I FLPPNV SVYQP D GIL  L+CQY+ E
Sbjct:  347 VVPCCNTTGSLMVPLAVISTSKNTMIFRHVRKPPCPYFAQESAWLDAAICQRWFDEVFVAFVKGKTSKKVALLWDNCPGHKINSNDPQ-IFIMFLPPNVISVYQPMDMGILFVLKCQYRNE 466          
BLAST of mRNA_F-distichus_contig9826.19264.1 vs. uniprot
Match: A0A6H5KIE7_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIE7_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 3.400e-46
Identity = 77/120 (64.17%), Postives = 93/120 (77.50%), Query Frame = 3
Query:    6 VACCNTTGSLMVPLAAISTAKSPPIFRHLSKSPTPYYAQPSAWLDSSICELWFHEVFVPFVKRTNGRKVALVWDNCSGHIIRNNDPK*ITINFLPPNVTSVYQPCDQGILHALECQYKTE 365
            VACCNTTGSLMVP A IST+K   +FRH+ K P  Y+ Q SAWLD++IC+ WF +VFVPFVK    +KVAL+WDNC GH I++NDP+ I I FLPP +TSVYQP D GIL  L+C+YKTE
Sbjct:   10 VACCNTTGSLMVPFAVISTSKKTMVFRHVRKPPCSYFDQESAWLDAAICQ-WFDKVFVPFVKGKTSKKVALLWDNCPGHKIKSNDPQ-IVIIFLPPEITSVYQPMDMGILFVLKCRYKTE 127          
BLAST of mRNA_F-distichus_contig9826.19264.1 vs. uniprot
Match: A0A6H5JV34_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV34_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 1.760e-45
Identity = 76/109 (69.72%), Postives = 88/109 (80.73%), Query Frame = 3
Query:    3 VVACCNTTGSLMVPLAAISTAKSPPIFRHLSKSPTPYYAQPSAWLDSSICELWFHEVFVPFVKRTNGRKVALVWDNCSGHIIRNNDPK*ITINFLPPNVTSVYQPCDQG 329
            VV+CCNTTGSL VPLA I TAK P +FRH+ K   PYYAQ S WLDSS+C+ WF EVFVPFVK+T G+KVAL+WDNC GH I+N+DP+ I I FLPPNVTSV+QP D G
Sbjct:  161 VVSCCNTTGSLKVPLAVIHTAKDPMVFRHVRKPACPYYAQKSGWLDSSLCQRWFDEVFVPFVKKTTGKKVALLWDNCPGHRIKNDDPQ-IVIIFLPPNVTSVFQPMDMG 268          
BLAST of mRNA_F-distichus_contig9826.19264.1 vs. uniprot
Match: A0A6H5K051_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K051_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 1.090e-41
Identity = 76/121 (62.81%), Postives = 89/121 (73.55%), Query Frame = 3
Query:    3 VVACCNTTGSLMVPLAAISTAKSPPIFRHLSKSPTPYYAQPSAWLDSSICELWFHEVFVPFVKRTNGRKVALVWDNCSGHIIRNNDPK*ITINFLPPNVTSVYQPCDQGILHALECQYKTE 365
            VVACCNT GSLMVPLA IST+K   +FR + K P PY+AQ SAWLD++I + WF EVFVPFVK     KVAL+WD   GH I++NDP+ I + FLPPNV SVYQP   GIL  L+ QYKTE
Sbjct:  187 VVACCNTAGSLMVPLAVISTSKKRVVFRLVRKPPCPYFAQDSAWLDAAIYQRWFDEVFVPFVKGKTSTKVALLWDKGPGHKIKSNDPQ-IVVIFLPPNVPSVYQPMGMGILLVLKRQYKTE 306          
BLAST of mRNA_F-distichus_contig9826.19264.1 vs. uniprot
Match: A0A6H5KQ75_9PHAE (HTH CENPB-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ75_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 8.650e-41
Identity = 72/121 (59.50%), Postives = 87/121 (71.90%), Query Frame = 3
Query:    3 VVACCNTTGSLMVPLAAISTAKSPPIFRHLSKSPTPYYAQPSAWLDSSICELWFHEVFVPFVKRTNGRKVALVWDNCSGHIIRNNDPK*ITINFLPPNVTSVYQPCDQGILHALECQYKTE 365
            VVACCNTTGSL VPLA I TAK P +FRH+ K   PYYA+ SAWLDS++C+ WF EVFVPFVK+T G+KVAL+WDNC GH I+N+DP+                P + GIL AL+CQYKT+
Sbjct:  325 VVACCNTTGSLKVPLAVIHTAKDPMVFRHVRKPACPYYARKSAWLDSALCQRWFDEVFVPFVKKTTGKKVALLWDNCPGHRIKNDDPQ---------------IPMNMGILFALKCQYKTD 430          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig9826.19264.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JEY2_9PHAE1.310e-5471.90HTH CENPB-type domain-containing protein n=2 Tax=E... [more]
A0A6H5JV64_9PHAE9.090e-5471.90HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5JYC6_9PHAE6.970e-5270.00DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JNS8_9PHAE8.570e-4967.74HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5KA74_9PHAE3.790e-4868.29HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5JEK6_9PHAE3.690e-4766.94DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KIE7_9PHAE3.400e-4664.17DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JV34_9PHAE1.760e-4569.72HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5K051_9PHAE1.090e-4162.81HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5KQ75_9PHAE8.650e-4159.50HTH CENPB-type domain-containing protein (Fragment... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig9826contigF-distichus_contig9826:1121..1488 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size369
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931162.164174-CDS-F-distichus_contig9826:1122..14881622931162.164174-CDS-F-distichus_contig9826:1122..1488Fucus distichus monoicousCDSF-distichus_contig9826 1123..1488 -
1690886185.278977-CDS-F-distichus_contig9826:1122..14881690886185.278977-CDS-F-distichus_contig9826:1122..1488Fucus distichus monoicousCDSF-distichus_contig9826 1123..1488 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig9826.19264.1prot_F-distichus_contig9826.19264.1Fucus distichus monoicouspolypeptideF-distichus_contig9826 1123..1488 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig9826.19264.1

>prot_F-distichus_contig9826.19264.1 ID=prot_F-distichus_contig9826.19264.1|Name=mRNA_F-distichus_contig9826.19264.1|organism=Fucus distichus monoicous|type=polypeptide|length=122bp
RLSPAATRPARSWCRWPPSARRKARRFFDILANHQHPTTPSQAPGSIHLS
ASCGFTRSSSPSSKEQTGGRWPLCGITARATSSGTMTRNKSPLTSCRPTS
RLSTSPATRESCMPSSASTRPR
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mRNA from alignment at F-distichus_contig9826:1121..1488-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig9826.19264.1 ID=mRNA_F-distichus_contig9826.19264.1|Name=mRNA_F-distichus_contig9826.19264.1|organism=Fucus distichus monoicous|type=mRNA|length=368bp|location=Sequence derived from alignment at F-distichus_contig9826:1121..1488- (Fucus distichus monoicous)
CGGTTGTCGCCTGCTGCAACACGACCGGCTCGCTCATGGTGCCGCTGGCC GCCATCAGCACGGCGAAAAGCCCGCCGATTTTTCGACATCTTAGCAAATC ACCAACACCCTACTACGCCCAGCCAAGCGCCTGGCTCGATTCATCTATCT GCGAGCTGTGGTTTCACGAGGTCTTCGTCCCCTTCGTCAAAAGAACAAAC GGGAGGAAGGTGGCCCTTGTGTGGGATAACTGCTCGGGCCACATCATCAG GAACAATGACCCGAAATAAATCACCATTAACTTCTTGCCGCCCAACGTCA CGTCTGTCTACCAGCCCTGCGACCAGGGAATCCTGCATGCCCTCGAGTGC CAGTACAAGACCGAGATG
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Coding sequence (CDS) from alignment at F-distichus_contig9826:1121..1488-

>mRNA_F-distichus_contig9826.19264.1 ID=mRNA_F-distichus_contig9826.19264.1|Name=mRNA_F-distichus_contig9826.19264.1|organism=Fucus distichus monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at F-distichus_contig9826:1121..1488- (Fucus distichus monoicous)
CGGTTGTCGCCTGCTGCAACACGACCGGCTCGCTCATGGTGCCGCTGGCC
GCCATCAGCACGGCGAAAAGCCCGCCGATTTTTCGACATCTTAGCAAATC
ACCAACACCCTACTACGCCCAGCCAAGCGCCTGGCTCGATTCATCTATCT
GCGAGCTGTGGTTTCACGAGGTCTTCGTCCCCTTCGTCAAAAGAACAAAC
GGGAGGAAGGTGGCCCTTGTGTGGGATAACTGCTCGGGCCACATCATCAG
GAACAATGACCCGAAATAAATCACCATTAACTTCTTGCCGCCCAACGTCA
CGTCTGTCTACCAGCCCTGCGACCAGGGAATCCTGCATGCCCTCGAGTGC
CAGTACAAGACCGAGACGGTTGTCGCCTGCTGCAACACGACCGGCTCGCT
CATGGTGCCGCTGGCCGCCATCAGCACGGCGAAAAGCCCGCCGATTTTTC
GACATCTTAGCAAATCACCAACACCCTACTACGCCCAGCCAAGCGCCTGG
CTCGATTCATCTATCTGCGAGCTGTGGTTTCACGAGGTCTTCGTCCCCTT
CGTCAAAAGAACAAACGGGAGGAAGGTGGCCCTTGTGTGGGATAACTGCT
CGGGCCACATCATCAGGAACAATGACCCGAAATAAATCACCATTAACTTC
TTGCCGCCCAACGTCACGTCTGTCTACCAGCCCTGCGACCAGGGAATCCT
GCATGCCCTCGAGTGCCAGTACAAGACCGAGA
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