mRNA_F-distichus_contig9822.19259.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig9822.19259.1
Unique NamemRNA_F-distichus_contig9822.19259.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig9822.19259.1 vs. uniprot
Match: D7G0P2_ECTSI (Origin recognition complex subunit 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0P2_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 1.160e-41
Identity = 68/108 (62.96%), Postives = 86/108 (79.63%), Query Frame = 2 
Query:    8 RLERRGRKRDGCSFLVIFQEYESYLRKFPKCHLRFSKAIVFKAYRQLAEQGLLRVAESGTGGGREAHPMLRARFRSRFGCDEIHRMMREELVRAPTNVVQWCKEWQRE 331
            RLERRGRK+DGCSF  +F+EY SYLR+F  CHLRFS+A++FKA+ QL EQG LR AE GTGGGREAHP+L  RFRS F  +++ R + + ++ APTNV +WCK WQR+
Sbjct:  400 RLERRGRKKDGCSFEAVFREYGSYLREFRTCHLRFSRAVIFKAFSQLVEQGALRSAEPGTGGGREAHPVLHCRFRSHFDIEQVERALEKNVIAAPTNVARWCKRWQRQ 507
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BLAST of mRNA_F-distichus_contig9822.19259.1 vs. uniprot
Match: A0A6H5JJU9_9PHAE (Origin recognition complex subunit 4 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJU9_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 2.800e-41
Identity = 68/108 (62.96%), Postives = 86/108 (79.63%), Query Frame = 2 
Query:    8 RLERRGRKRDGCSFLVIFQEYESYLRKFPKCHLRFSKAIVFKAYRQLAEQGLLRVAESGTGGGREAHPMLRARFRSRFGCDEIHRMMREELVRAPTNVVQWCKEWQRE 331
            RLERRGRK+DGCSF  +F+EY SYLR+F  CHLRFS+A++FKA+ QL EQG LR AE GTGGGREAHP+L  RFRS F  +++ R + + ++ APTNV +WCK WQR+
Sbjct:  441 RLERRGRKKDGCSFETVFREYGSYLREFRTCHLRFSRAMIFKAFSQLVEQGALRSAEPGTGGGREAHPVLHCRFRSHFDIEQVERALEKNVINAPTNVARWCKRWQRQ 548
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig9822.19259.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G0P2_ECTSI1.160e-4162.96Origin recognition complex subunit 4 n=1 Tax=Ectoc... [more]
A0A6H5JJU9_9PHAE2.800e-4162.96Origin recognition complex subunit 4 n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig9822contigF-distichus_contig9822:103..1606 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size337
Cds size336
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig9822.19259.1prot_F-distichus_contig9822.19259.1Fucus distichus monoicouspolypeptideF-distichus_contig9822 103..1605 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931161.7651768-CDS-F-distichus_contig9822:102..1681622931161.7651768-CDS-F-distichus_contig9822:102..168Fucus distichus monoicousCDSF-distichus_contig9822 103..168 +
1690886185.0905988-CDS-F-distichus_contig9822:102..1681690886185.0905988-CDS-F-distichus_contig9822:102..168Fucus distichus monoicousCDSF-distichus_contig9822 103..168 +
1622931161.780806-CDS-F-distichus_contig9822:836..9561622931161.780806-CDS-F-distichus_contig9822:836..956Fucus distichus monoicousCDSF-distichus_contig9822 837..956 +
1690886185.1087887-CDS-F-distichus_contig9822:836..9561690886185.1087887-CDS-F-distichus_contig9822:836..956Fucus distichus monoicousCDSF-distichus_contig9822 837..956 +
1622931161.8070555-CDS-F-distichus_contig9822:1455..16051622931161.8070555-CDS-F-distichus_contig9822:1455..1605Fucus distichus monoicousCDSF-distichus_contig9822 1456..1605 +
1690886185.1239703-CDS-F-distichus_contig9822:1455..16051690886185.1239703-CDS-F-distichus_contig9822:1455..1605Fucus distichus monoicousCDSF-distichus_contig9822 1456..1605 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig9822.19259.1

>prot_F-distichus_contig9822.19259.1 ID=prot_F-distichus_contig9822.19259.1|Name=mRNA_F-distichus_contig9822.19259.1|organism=Fucus distichus monoicous|type=polypeptide|length=112bp
GGEAGAQGAQEGRVLVPGDLSGVRVLPPEIPKVSPPLLQGYRLQGLPSAR
RARAPAGGRVWHRRWSRSASHAARSVSKSLRVRRNPPDDEGGAGSGADER
GAVVQGVAEGGL
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mRNA from alignment at F-distichus_contig9822:103..1606+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig9822.19259.1 ID=mRNA_F-distichus_contig9822.19259.1|Name=mRNA_F-distichus_contig9822.19259.1|organism=Fucus distichus monoicous|type=mRNA|length=1504bp|location=Sequence derived from alignment at F-distichus_contig9822:103..1606+ (Fucus distichus monoicous)
GGCGGCGAGGCTGGAGCGCAGGGGGCGCAAGAGGGACGGGTGCTCGTTCC
TGGTGATCTTTCAGGAGTAAGTTTTCTACGTCGACAGCGGTGGGGTGAAG
GCGTTATCTTGTTCGGGGAGGAACGCTCTCGTGACGTTCTTGGCCGACGT
CAAAGTAGCGAGCGACAGACACAAAGTACCCTCGCAAGTTATTGCTAACG
CTTAACGGAGGGTTTGTGTGTGCGTGTGTGTTAATTAAATTGCACATAAC
CGCGCAATTCGGCCGTGTGTGTGTGTGTGTGTGTATTACGATTATTGAAT
TGCACCCATCTGTGCAGTCCGGCCCTACCTATTCTGCTAGTTATTGTATC
CTACTCGCATCATAGTCCCTATTCGTAGTCCCTATAAGTACAATAGTCCC
TATTTATAGACCCTACTAGTACAATAGTCCCTATTTATAATGGGGGACCA
GTGATTGTTGTCATGAACATGTCTGATGAGGCATGTTAAAAGATATCCAC
GATAATATCTCTACGGCCCCTGTGGAACCCTCCAACATCCTCCGTTCCCC
TCTCCTCTACTTGGTTGCCGTGTTGCTGGTTTGAGTCGGTATATATTTTG
CTTGCATCGGTATTGTTTGTTCGTGTGTGTGTGTGTGTGTGTGTGTGTGT
TTTCTCTTTCCTATCGAATGGTATTTTACTCTACTGTCTTGTGCTGCATT
TTACTCTCTTTGATTGAATCATGTCGCCATCAAGGTACGAGTCCTACCTC
CGGAAATTCCCAAAGTGTCACCTCCGCTTCTCCAAGGCTATCGTCTTCAA
GGCCTACCGTCAGCTCGCAGAGCAAGGGCTCCTGCGGGTGGCAGAGTCTG
GCACGTGAGAATGAGAATGATTCCTCCCGACCCTTTTCGTGTGTCGGAAT
GGAAGTGCATCGTACCAGTACCAAATATAATGGAAACCTTCCTTCCGCGA
GAACATGTATTTTCTCTTCGAGACCTTGTTTGGCGGACGGTCGTTGAAAC
TTTTTTGGAAACGCGACGGATTGAACGCCGGGAACAAAGCGACAAAGAAA
CAAATTCTGGCTTGTTTTCTTTTAAATGAGAAGTGAGCTCTTGATGTCCC
GCCGCGAACAAAGACAAGAACATACACAGTATAATGGATGGAATTTTAAA
GGTGAAACCCCTTGTGGGAAGTTGGGGCCGGGGTAGGTGGGAGGAATGTT
TTTTTTATGACGGACATCTTGATGCTCACGACCAAAAATGTCAGAAACCC
CTATCCAACAGCCCTCTTCTCCTATTTTCCGCCTCATGCGCCCTCTTCCC
TTTTTTTGCGTCTGTTATCTTCCCTTCTCTTCTCTCCTCGTGGGGGAGGG
CAGCGGCGGTGGTCGAGAAGCGCATCCCATGCTGCGCGCTCGGTTTCGAA
GTCGCTTCGGGTGCGACGAAATCCACCGGATGATGAGGGAGGAGCTGGTT
CGGGCGCCGACGAACGTGGTGCAGTGGTGCAAGGAGTGGCAGAGGGAGGT
CTAA
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Coding sequence (CDS) from alignment at F-distichus_contig9822:103..1606+

>mRNA_F-distichus_contig9822.19259.1 ID=mRNA_F-distichus_contig9822.19259.1|Name=mRNA_F-distichus_contig9822.19259.1|organism=Fucus distichus monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at F-distichus_contig9822:103..1606+ (Fucus distichus monoicous)
GGCGGCGAGGCTGGAGCGCAGGGGGCGCAAGAGGGACGGGTGCTCGTTCC
TGGTGATCTTTCAGGAGGCGGCGAGGCTGGAGCGCAGGGGGCGCAAGAGG
GACGGGTGCTCGTTCCTGGTGATCTTTCAGGAGTACGAGTCCTACCTCCG
GAAATTCCCAAAGTGTCACCTCCGCTTCTCCAAGGCTATCGTCTTCAAGG
CCTACCGTCAGCTCGCAGAGCAAGGGCTCCTGCGGGTGGCAGAGTCTGGC
ACGTACGAGTCCTACCTCCGGAAATTCCCAAAGTGTCACCTCCGCTTCTC
CAAGGCTATCGTCTTCAAGGCCTACCGTCAGCTCGCAGAGCAAGGGCTCC
TGCGGGTGGCAGAGTCTGGCACCGGCGGTGGTCGAGAAGCGCATCCCATG
CTGCGCGCTCGGTTTCGAAGTCGCTTCGGGTGCGACGAAATCCACCGGAT
GATGAGGGAGGAGCTGGTTCGGGCGCCGACGAACGTGGTGCAGTGGTGCA
AGGAGTGGCAGAGGGAGGTCTACGGCGGTGGTCGAGAAGCGCATCCCATG
CTGCGCGCTCGGTTTCGAAGTCGCTTCGGGTGCGACGAAATCCACCGGAT
GATGAGGGAGGAGCTGGTTCGGGCGCCGACGAACGTGGTGCAGTGGTGCA
AGGAGTGGCAGAGGGAGGTCTA
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