mRNA_F-distichus_contig9819.19255.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig9819.19255.1
Unique NamemRNA_F-distichus_contig9819.19255.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig9819.19255.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig9819contigF-distichus_contig9819:4824..9868 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons4
Model size1620
Cds size342
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig9819.19255.1prot_F-distichus_contig9819.19255.1Fucus distichus monoicouspolypeptideF-distichus_contig9819 5979..6858 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931161.0919838-UTR-F-distichus_contig9819:4823..57461622931161.0919838-UTR-F-distichus_contig9819:4823..5746Fucus distichus monoicousUTRF-distichus_contig9819 4824..5746 -
1690886184.5633972-UTR-F-distichus_contig9819:4823..57461690886184.5633972-UTR-F-distichus_contig9819:4823..5746Fucus distichus monoicousUTRF-distichus_contig9819 4824..5746 -
1622931161.1099195-UTR-F-distichus_contig9819:5783..59781622931161.1099195-UTR-F-distichus_contig9819:5783..5978Fucus distichus monoicousUTRF-distichus_contig9819 5784..5978 -
1690886184.5802944-UTR-F-distichus_contig9819:5783..59781690886184.5802944-UTR-F-distichus_contig9819:5783..5978Fucus distichus monoicousUTRF-distichus_contig9819 5784..5978 -
1622931161.1531346-UTR-F-distichus_contig9819:6858..68871622931161.1531346-UTR-F-distichus_contig9819:6858..6887Fucus distichus monoicousUTRF-distichus_contig9819 6859..6887 -
1690886184.623039-UTR-F-distichus_contig9819:6858..68871690886184.623039-UTR-F-distichus_contig9819:6858..6887Fucus distichus monoicousUTRF-distichus_contig9819 6859..6887 -
1622931161.1749942-UTR-F-distichus_contig9819:9737..98681622931161.1749942-UTR-F-distichus_contig9819:9737..9868Fucus distichus monoicousUTRF-distichus_contig9819 9738..9868 -
1690886184.7809818-UTR-F-distichus_contig9819:9737..98681690886184.7809818-UTR-F-distichus_contig9819:9737..9868Fucus distichus monoicousUTRF-distichus_contig9819 9738..9868 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931161.1229842-CDS-F-distichus_contig9819:5978..62511622931161.1229842-CDS-F-distichus_contig9819:5978..6251Fucus distichus monoicousCDSF-distichus_contig9819 5979..6251 -
1690886184.5999832-CDS-F-distichus_contig9819:5978..62511690886184.5999832-CDS-F-distichus_contig9819:5978..6251Fucus distichus monoicousCDSF-distichus_contig9819 5979..6251 -
1622931161.1356206-CDS-F-distichus_contig9819:6789..68581622931161.1356206-CDS-F-distichus_contig9819:6789..6858Fucus distichus monoicousCDSF-distichus_contig9819 6790..6858 -
1690886184.6122353-CDS-F-distichus_contig9819:6789..68581690886184.6122353-CDS-F-distichus_contig9819:6789..6858Fucus distichus monoicousCDSF-distichus_contig9819 6790..6858 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig9819.19255.1

>prot_F-distichus_contig9819.19255.1 ID=prot_F-distichus_contig9819.19255.1|Name=mRNA_F-distichus_contig9819.19255.1|organism=Fucus distichus monoicous|type=polypeptide|length=114bp
MFRPSSMVWMLAALAAYFVSAGDVVVCIITNNVPPVKEFSTTAIPEDKFR
ATMAAGALLGSCSDYLGELCDDGDFCTLDYYIENATCRALPREVVNHCPK
TNLRSPHQSTARA*
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mRNA from alignment at F-distichus_contig9819:4824..9868-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig9819.19255.1 ID=mRNA_F-distichus_contig9819.19255.1|Name=mRNA_F-distichus_contig9819.19255.1|organism=Fucus distichus monoicous|type=mRNA|length=5045bp|location=Sequence derived from alignment at F-distichus_contig9819:4824..9868- (Fucus distichus monoicous)
CTCATCACTCCTTCTCTACTCCACCCTTGTCGGCCAACTTCGTACACGCA
ACACATCTCCTCCTCCTTCTCTTCGCTTCGTCCACCAGCACCAGCACTTG
GTCATTTTTTTAATAGGCTGACCAAATCAAGGTGAGGAGGTAATATTTGG
TCAAATTCATTCGGTGCCCTATCATCGGAAACTCGTCGTTGGCGCGCTGC
GTATACTAAACGTTTGCCCGTCATCATGTAGAAAAAACTGATTCTTAGGG
CTTGGGGGCCCGACTCTCCCATGTATTTCCGACTTCATTGTTGTAGGGTA
CTTCTAGCGAGGCTTTTGCGAAGCTTTTCCACCAGGCTGGTTTCACCTCG
CTGTGTCGTCTTCCTCGTCTATCTCGTTAAGACAGCAAATAAACAATAGC
GGTCATGATGGAGGATGTGGCTATAATTTATTATGTTATTAGAGTACTCG
GACGCGATCGACATTGTAAGAGTAGTTCCAAGAACGACGCACCCACCCGT
AGCTACCTCCCTAAATTTTCACGCAAACACACACGCGCACTCAGATAAAC
TACTACTGTTATTTAATACCATACATGGATAATTTCGTACCACTGCCTAC
CAAACGGAAAAGACAAAGAGTGATTCTTCCGCGACGGCAGAACACGACGG
TTACCCTCCAAAATGTAGATTTGATCTACCAGCGGTAAGAAATGCGACGG
CACTCAGGAGGGGAGGGAGAGCGCGCAAAAAAAACATTACGTCGAGGAAG
AAATGTTACGTTTCACACGCTTTAGAAACACACTGCCGTCGCATACTGAC
GGTATTTTCACAAGAGCTAACAATGCAGTTGCATAATCCAAATCGGATCA
GCGCCTTGGCTTTACAAACTTTCCATCTGCACTCAATCGCAACGTCCTCA
TCAGTCAGCATCTTATATCTCACCGAGAGTGACTCACACTATGCTTTCTT
TGTAGAAGTAGTTAGAGTACAATCCTCCGAAGGACAACCATCCCCGTCTG
AAGATTAAATAATGTTTTTGTTTCTACAGGTAGTATTCAGTCGTGTTCGA
GGCGCTCTTGTCAAAATAAAATGTTTGTTAGCCTTGCGCTTAGAGCTAGG
GTTTCACCATCCGTCGTTGTAGTATCTATGATTCGTGCTTATTTTGCTCA
AGAAATAAATATAATTAAGTTAAGCAGGTACGCCCAAAAGGAGATAGCAT
GCGCTAGAAAGCAAAATTGATCATAAAATATATGTAGTCGATTATTGAGC
TCTGACGAGTTTTCGGGTTTGAAGCATACTAATACTGTACACGAGAAAGC
ACGATTTCACGGTGTAATGCTCGAAAATACAATGCCATTTATCGGAGGGA
CAGTTCTTGGCACACCGACCGCATAGTACAGTATTACCCTGCTGTGATAC
GTCATAGTCATATTAGGGTGTTGGCTCGTCCGCCCCTAATGGTCGCCTTC
CGCAGGTATTTGACGCACGACTGACCTTCACGTCTTCTGCAAACCAGCGT
ACAGTGCATAGTTGGTGATGGTAATGCTATTGGAATCTCTCCCGTCTCGC
TAGACATCGATTGCTGTACTACTATACTATACTGGTAGTACTTAGTTCAA
AATCTGGCTCTCCCTATCTAGTTCTAACTTTATTATTTTAGTTGTAATGC
AGTTCTTTAATAATTGCCCGTCGAACCCTCTCTACTCTGCTCTACCTTTT
GAAACATCTTTCCTCTATGACTACGAAATCAATTGTTAAATAGAAAGTTT
CAGTCTATCTATATAGAACTGGTAAAAAATAACTCATAGCATTTACTAGA
GGGGCCTTTAGGGTGTGTACATTATTATTAGAGTGTAGAGTCGGACGAAA
CCCGCAACTTTTTAATTAGTGGTATGAGTGCCACTGTATCACAAGCAGTA
GTCTCACAGCTTGCTTACAACCAACCGTAGCCCAGACCTAGAGTCAATCT
TCAGACCTGTGTTCTGAATAGTTATCACATATTATAGCACATTGCGCATC
ATCTGGCTTGGTTGCCATCCCTGCTCGTGGTCAGCTGAACAGGGAAAGGA
AACTGTTTTTTTGCCTGCCCGCGTTCGTGCCTGAGAACTTGGTCTCGCGA
GAAGACTGTTTGGGCCGTCCCGTCCAGAGTCAGCCCGCTCATTGTAAACT
ACTCGTGGGTTCAGACAACAATCATCATGGACCATTTTTTTTTGTGCGCC
TCTCTTTTCCCACACCCGCTGTTTGCACGGCTCTAGGGGATATGTTGTGC
GATACCACTGTTGCATACAGGACTTTTTAATCTATCTCGGCGTTCACCAG
AGATAGTGAATAAGCCCGCCTGAAAAATTCCCAAAATGATGACGTATTTC
GCCCGTTCTGGAACACACGTGGAAAATGTGCCGATTATATCGCCTCCTCG
AACTTGCACAATAGGTTCGTAACTCGTGCTTGCGTCAAGTTACTGCACCA
AAAGCTATAGTGATTCACGTCGTCTCGCGGGCTTTTAATTTAGTAGCTCT
GGTTGGGACTACTCGTGAATGGAAACGGTTGCACCGCCGGCGGTAGAGCA
CAATTTTTGTAGCCAAGCGCTCATCGTGGCTATGCACCCCGAAACGTCGT
TCAAGGGTTGTTTCCCAACCAAACGTCATCCTCCGCTGCGTTCCATGAGA
GACGGAGGAAGTGACTCAGTATAGGCTCTTCTTCGGACAATTTGAATTAT
ACTTTACTTTACAATAGTGTACTACACTCTTCTCTTATCTGCTATACTGT
ACCGTTCGACAGTGTCATGGCGAGAGGCTTTCCCGAGGTTTGTAACCATG
TTGAAGTCTTATTAGGTAGTTAGAAGTATGTGTGTATGGTTGGTTCAAAA
ATATATATACCTAGTCGATACGAAATTTATCGTCTACAAAATTTACAGTA
ACTACAAAACGAATAGCGACCACTGGAAAGCTCGACTTGTTAACTCTGCG
CCCTTCTTTCCCCTTTGACGCTCATCTCCAGGCTAATTAACAACCATACC
CAGTGTCATCATGTTCCGCCCGTCATCGATGGTATGGATGCTGGCGGCTT
TGGCGGCCTACTTCGTTTCCGCTGGTGACGTAAGTGAAGTACCAACATAT
GGCAGAGAGACGGAAATTGTACACAGTAAACTGTATTCGATCTACATCAT
ACTGTATTTCGAGAGAAAGGGAGGAGGGAGATGGTATTTCTATAATGGAC
GACGACAGGTTCAAAGCAGGATTGGGGCGTACTTCGTAGGGGAGTAGAGG
GAATAGCACCAGAGGTGTTTTTGATACGAGTATCCCGGGATTGAGCGTTC
ATCCCCATCGCTTGTAATCGGGTGTCTTGGGTCCGGTAATCGGGTGTCTT
GGGCCCGTTTCGACCCTTCTTTTGCCCGTCAGTAGATAGAGAGAATTCGC
TTCTCCCTTATCATCGCCTTGCTGCCCTTGAATGTGGGCTAGCTAGCTGT
AGAAAATTATCACGGCAGGTTTTAGAAAGTGGTACCGGGGATGGGATGAG
GAAAATACCCATCAATGACCACAGATGCCAGTTCGAAGTCCAACGAACGA
CGCCTTTCAGACCTCCGTACCACGTATCCGCACTATAACATTTAATATAC
GCGCGTATAATGGACAGGTGGTCGTCTGTATCATCACCAACAACGTCCCA
CCCGTGAAGGAGTTCAGCACTACGGCCATCCCAGAGGACAAATTTAGAGC
GACTATGGCGGCGGGTGCCCTCCTGGGCTCGTGCTCCGACTACCTCGGGG
AGCTCTGCGACGATGGAGATTTCTGCACTTTGGATTATTACATCGAGAAC
GCGACTTGCCGGGCCTTGCCTCGGGAGGTAGTGAACCACTGTCCCAAAAC
TAATTTACGGTCGCCCCACCAATCGACGGCTAGAGCCTGATCGATCTATC
GAGAACGAGCCTATCTGGTGTCTCATCAGCGAGATTTGATGAAGTGAACG
TCCAAGGAGCTTGTAGCGTTTGCGGTTGTTGGTGATTGAGTGGGAGGTTC
TTCTCAAATGCTAAACGCGAGCGCTCTCAGCTGGATGGAGTCGCTGCTCA
TCGCTAAACAACATTATAAATGGGGTTTTGCGGCGGTGACCCTTTATTAC
ACATACCTACGTTCACTATGAGCCCCCCCCCCTCTATGTATGGAGGTGCT
CAGCCGTGATTCAACTTGCCTGCGTGATCCCCCTATAATGTGAAGTACAG
TGGTACGGACTAGGACCCACTACCTTGAAGCTCACTTATTTCCTCAATTT
GTGGTGTTTCAATTTGCAAAATATTGGTACTTCGAATTTTAACTGTAACT
ACTGCATTTGGAGAAGCGTCCGCACTTGCAAGTTTTTTTGGATCCTAGAG
TATAGTAGTAGTAGGGTTAGTTGCCGTGCGGTTGCTCGATAACTCTGCCC
TGGGACGCCCCATGTGGTTTTCTTAGAAAAACTCTGCAAAATAGATATCA
GCTAACCAGAGAGATTTCTGAGACGTCTATTTTAGATCGTATGCAGGTTT
ATGTTAGCGCCTGACGTTTTATTTTGCCCTTCGCTCAAATCGCTAAACCC
GTGTAGCAAGACCAATAAAGCGTTGTTTACTGCTGTGTTGGTTTATGTAA
ATCTGGTGGCGGCTTGTTATTTTTTGGTACAACAAATCGTGGTTTCTGCG
TCATGACTATTAACAGCGGCGGGTATACGATGATAGATAGTGATCTCTTG
AATAGCCTACCACTTTTGCTGCTGCGGCGACGGGGTAATGCGGTCTTTTA
CTCCAGTCCCATATTCGCGACCAGCTGTCTCGGGCTTATGATCTCTTGAT
ATCGATGCAGCGTCCGTCGTGATTGCCAGTTAGGGTGGATGCGTCTATTG
CCGATCTTTCTTAGCATATATGATTGATGCGATCAAGCCGTTGCACCTTT
TAAGTTTGGCCGGCGTCCGCAATACGATTGATGGTTGCGATTTGATTTCT
GCGCAAGGAGTGCCGAGGTTTTATTTTGACTATTTTGGCTTCATGTCATC
ATTTCTGTGTTTGAATGCTGAATTATATAGCCTAGCACAAAATCA
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Coding sequence (CDS) from alignment at F-distichus_contig9819:4824..9868-

>mRNA_F-distichus_contig9819.19255.1 ID=mRNA_F-distichus_contig9819.19255.1|Name=mRNA_F-distichus_contig9819.19255.1|organism=Fucus distichus monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at F-distichus_contig9819:4824..9868- (Fucus distichus monoicous)
ATGTTCCGCCCGTCATCGATGGTATGGATGCTGGCGGCTTTGGCGGCCTA
CTTCGTTTCCGCTGGTGACATGTTCCGCCCGTCATCGATGGTATGGATGC
TGGCGGCTTTGGCGGCCTACTTCGTTTCCGCTGGTGACGTGGTCGTCTGT
ATCATCACCAACAACGTCCCACCCGTGAAGGAGTTCAGCACTACGGCCAT
CCCAGAGGACAAATTTAGAGCGACTATGGCGGCGGGTGCCCTCCTGGGCT
CGTGCTCCGACTACCTCGGGGAGCTCTGCGACGATGGAGATTTCTGCACT
TTGGATTATTACATCGAGAACGCGACTTGCCGGGCCTTGCCTCGGGAGGT
AGTGAACCACTGTCCCAAAACTAATTTACGGTCGCCCCACCAATCGACGG
CTAGAGCCTGAGTGGTCGTCTGTATCATCACCAACAACGTCCCACCCGTG
AAGGAGTTCAGCACTACGGCCATCCCAGAGGACAAATTTAGAGCGACTAT
GGCGGCGGGTGCCCTCCTGGGCTCGTGCTCCGACTACCTCGGGGAGCTCT
GCGACGATGGAGATTTCTGCACTTTGGATTATTACATCGAGAACGCGACT
TGCCGGGCCTTGCCTCGGGAGGTAGTGAACCACTGTCCCAAAACTAATTT
ACGGTCGCCCCACCAATCGACGGCTAGAGCCTGA
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