mRNA_F-distichus_contig98166.19253.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig98166.19253.1
Unique NamemRNA_F-distichus_contig98166.19253.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig98166.19253.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig98166contigF-distichus_contig98166:1123..1995 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionSR RNA splicing protein
Ec32 orthologEc-21_000220.1
Exons1
Model size873
Cds size501
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931160.9698274-UTR-F-distichus_contig98166:1122..14941622931160.9698274-UTR-F-distichus_contig98166:1122..1494Fucus distichus monoicousUTRF-distichus_contig98166 1123..1494 +
1690886184.5262-UTR-F-distichus_contig98166:1122..14941690886184.5262-UTR-F-distichus_contig98166:1122..1494Fucus distichus monoicousUTRF-distichus_contig98166 1123..1494 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931160.9905124-CDS-F-distichus_contig98166:1494..19951622931160.9905124-CDS-F-distichus_contig98166:1494..1995Fucus distichus monoicousCDSF-distichus_contig98166 1495..1995 +
1690886184.5362654-CDS-F-distichus_contig98166:1494..19951690886184.5362654-CDS-F-distichus_contig98166:1494..1995Fucus distichus monoicousCDSF-distichus_contig98166 1495..1995 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig98166.19253.1prot_F-distichus_contig98166.19253.1Fucus distichus monoicouspolypeptideF-distichus_contig98166 1495..1995 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig98166.19253.1

>prot_F-distichus_contig98166.19253.1 ID=prot_F-distichus_contig98166.19253.1|Name=mRNA_F-distichus_contig98166.19253.1|organism=Fucus distichus monoicous|type=polypeptide|length=167bp
MVFTSCSTVVLPFTACTPCTARTASSGGSLFSATVRRIERGPLEATVENF
RDVHLELSVQRDLDDVLATSASGGLRPEALLNRVVPRVSTSCSPSTVRTA
IELFFGSFLRTVLRIVPANCSSDRSCELFFGSFLQTLESERSLFAAFTPR
PSCSSQCPAGRYGSMV*
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mRNA from alignment at F-distichus_contig98166:1123..1995+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig98166.19253.1 ID=mRNA_F-distichus_contig98166.19253.1|Name=mRNA_F-distichus_contig98166.19253.1|organism=Fucus distichus monoicous|type=mRNA|length=873bp|location=Sequence derived from alignment at F-distichus_contig98166:1123..1995+ (Fucus distichus monoicous)
CCTACTGAGGCGCAATGGTGGGGGCGGGGGGAACGTTGTCATGTCCCCGC
TCTCCCCCTTGAAGGAACACGCCGCCACACTCCCGAACTCCGACATGAGC
CTCGAGTTCTTCTAGTTCTACTAGTTCATCTAGTTCCCCTCGTAACCTGG
TGCTGTAGTTCTGCCGGCTCGGCCAGTTCTACCTCTACTGGATCTTCCGT
CCAACAGTCCTGCTAGATCTGATCATAAGTTCTACCAGTTCTGCTAGTTC
GGCTGGTTCAACTTGTTCTGCCGCAAGTTCTGGCGGTTCCTATGCACACT
ACACTAGTCCAGCTGGTCTGCTAGTTCTGCAAGCTCGGATGCTGTTCTGT
TTTTTATTTTTATTTTTCTTCAATGGTTTTCACCAGTTGTTCTACTGTAG
TTCTGCCTTTCACTGCTTGTACTCCTTGTACTGCTCGTACAGCCAGTTCC
GGCGGTTCTTTGTTCTCTGCGACTGTTCGGCGTATTGAGCGAGGGCCACT
GGAAGCGACAGTCGAAAATTTTCGGGACGTACATCTAGAGCTGTCAGTTC
AGCGAGACTTGGACGATGTTTTGGCGACCTCAGCCAGCGGCGGCCTGAGG
CCTGAGGCTTTATTAAACCGGGTCGTTCCACGAGTATCCACAAGTTGTTC
CCCTTCCACGGTCAGAACGGCTATCGAACTGTTCTTCGGATCGTTCCTGC
GAACTGTTCTTCGGATCGTTCCTGCGAACTGTTCTTCGGATCGTTCCTGC
GAACTGTTCTTCGGATCGTTCCTGCAAACTCTTGAATCGGAGCGTTCGCT
TTTCGCGGCCTTCACCCCCCGGCCCTCGTGTTCTTCACAGTGTCCCGCGG
GGAGGTATGGTTCCATGGTTTAA
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Coding sequence (CDS) from alignment at F-distichus_contig98166:1123..1995+

>mRNA_F-distichus_contig98166.19253.1 ID=mRNA_F-distichus_contig98166.19253.1|Name=mRNA_F-distichus_contig98166.19253.1|organism=Fucus distichus monoicous|type=CDS|length=1002bp|location=Sequence derived from alignment at F-distichus_contig98166:1123..1995+ (Fucus distichus monoicous)
ATGGTTTTCACCAGTTGTTCTACTGTAGTTCTGCCTTTCACTGCTTGTAC
TCCTTGTACTGCTCGTACAGCCAGTTCCGGCGGTTCTTTGTTCTCTGCGA
CTGTTCGGCGTATTGAGCGAGGGCCACTGGAAGCGACAGTCGAAAATTTT
CGGGACGTACATCTAGAGCTGTCAGTTCAGCGAGACTTGGACGATGTTTT
GGCGACCTCAGCCAGCGGCGGCCTGAGGCCTGAGGCTTTATTAAACCGGG
TCGTTCCACGAGTATCCACAAGTTGTTCCCCTTCCACGGTCAGAACGGCT
ATCGAACTGTTCTTCGGATCGTTCCTGCGAACTGTTCTTCGGATCGTTCC
TGCGAACTGTTCTTCGGATCGTTCCTGCGAACTGTTCTTCGGATCGTTCC
TGCAAACTCTTGAATCGGAGCGTTCGCTTTTCGCGGCCTTCACCCCCCGG
CCCTCGTGTTCTTCACAGTGTCCCGCGGGGAGGTATGGTTCCATGGTTTA
AATGGTTTTCACCAGTTGTTCTACTGTAGTTCTGCCTTTCACTGCTTGTA
CTCCTTGTACTGCTCGTACAGCCAGTTCCGGCGGTTCTTTGTTCTCTGCG
ACTGTTCGGCGTATTGAGCGAGGGCCACTGGAAGCGACAGTCGAAAATTT
TCGGGACGTACATCTAGAGCTGTCAGTTCAGCGAGACTTGGACGATGTTT
TGGCGACCTCAGCCAGCGGCGGCCTGAGGCCTGAGGCTTTATTAAACCGG
GTCGTTCCACGAGTATCCACAAGTTGTTCCCCTTCCACGGTCAGAACGGC
TATCGAACTGTTCTTCGGATCGTTCCTGCGAACTGTTCTTCGGATCGTTC
CTGCGAACTGTTCTTCGGATCGTTCCTGCGAACTGTTCTTCGGATCGTTC
CTGCAAACTCTTGAATCGGAGCGTTCGCTTTTCGCGGCCTTCACCCCCCG
GCCCTCGTGTTCTTCACAGTGTCCCGCGGGGAGGTATGGTTCCATGGTTT
AA
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