mRNA_F-distichus_contig98132.19252.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig98132.19252.1
Unique NamemRNA_F-distichus_contig98132.19252.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig98132.19252.1 vs. uniprot
Match: A0A7S0H3W9_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0H3W9_9EUKA)

HSP 1 Score: 58.2 bits (139), Expect = 6.290e-8
Identity = 25/59 (42.37%), Postives = 39/59 (66.10%), Query Frame = 1
Query:    4 NSTVGEFIACVRWREAIDTLDRMRSRGVPPDTYSWNTAISACGRVGEWEQALKLLARME 180
            N  +  +  C  W++A+  L+ M+   + PDT+ +NTAISACGR  EW +AL+L A++E
Sbjct:   47 NHLINAYAKCALWQKAVLCLETMK---INPDTFLFNTAISACGRKKEWGRALELFAKLE 102          
BLAST of mRNA_F-distichus_contig98132.19252.1 vs. uniprot
Match: D8LMP8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMP8_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 3.030e-7
Identity = 22/50 (44.00%), Postives = 33/50 (66.00%), Query Frame = 1
Query:   40 WREAIDTLDRMRSRGVPPDTYSWNTAISACGRVGEWEQALKLLARMEESG 189
            W   +  ++ MR+ GV PD +++ TAI+ACG+ G+WE+AL LL  M   G
Sbjct:  173 WALVLGLMEEMRAEGVAPDVFTFTTAITACGKAGQWERALDLLEEMGGGG 222          
BLAST of mRNA_F-distichus_contig98132.19252.1 vs. uniprot
Match: A0A6H5KUL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUL4_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 4.170e-7
Identity = 21/46 (45.65%), Postives = 32/46 (69.57%), Query Frame = 1
Query:   40 WREAIDTLDRMRSRGVPPDTYSWNTAISACGRVGEWEQALKLLARM 177
            W   +  ++ MR+ GV PD +++ TAI+ACG+ G+WE+AL LL  M
Sbjct:  423 WAIVLGLMEEMRAEGVAPDVFTFTTAITACGKAGQWERALDLLEEM 468          
BLAST of mRNA_F-distichus_contig98132.19252.1 vs. uniprot
Match: D8LG06_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG06_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 5.610e-7
Identity = 27/71 (38.03%), Postives = 42/71 (59.15%), Query Frame = 1
Query:    1 INSTVGEFIACVRWREAIDTLDRMRSRGVPPDTYSWNTAISACGRVGEWEQALKLLARMEESGSEAHPDIF 213
            + + + E     +WREA+  LD M+  GV    +S+ TAI+ CGR G+WE+AL+LL  + E      P++F
Sbjct:  113 LQAALREAATTGKWREALGILDEMKEGGVVC-AHSYTTAITTCGRQGQWEKALELLREIPEQ-EGVSPNVF 181          
BLAST of mRNA_F-distichus_contig98132.19252.1 vs. uniprot
Match: A0A813LBA2_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813LBA2_POLGL)

HSP 1 Score: 55.1 bits (131), Expect = 7.640e-7
Identity = 25/65 (38.46%), Postives = 40/65 (61.54%), Query Frame = 1
Query:    1 INSTVGEFIAC----VRWREAIDTLDRMRSRGVPPDTYSWNTAISACGRVGEWEQALKLLARMEE 183
            + ST     AC     RWR A++    + +RG+ PDT +WN+ +SACGR  +W  AL+LL+++ +
Sbjct:  538 VASTSAAMSACEGRGARWRWALELGAGLGARGLRPDTVTWNSGLSACGRGEQWPLALELLSKVRK 602          
BLAST of mRNA_F-distichus_contig98132.19252.1 vs. uniprot
Match: A0A812QE05_9DINO (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812QE05_9DINO)

HSP 1 Score: 54.7 bits (130), Expect = 1.010e-6
Identity = 30/72 (41.67%), Postives = 41/72 (56.94%), Query Frame = 1
Query:   40 WREAIDTLDRMRSRGVPPDTYSWNTAISACGR-VGEWEQALKLLARMEESGSEAHPDIFSYNGAIGAAAKAG 252
            W  A   LD MR RG+ PD + +N+A+SAC + V  WE  L+LL +ME+       D+ SY+  I A  K G
Sbjct:  253 WPRATFLLDAMRQRGLLPDIFGFNSAVSACEKAVAGWEVPLQLLQQMEDL--RVAKDVVSYSSTISAHEKVG 322          
BLAST of mRNA_F-distichus_contig98132.19252.1 vs. uniprot
Match: A0A7S2CPF0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CPF0_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 3.180e-6
Identity = 26/57 (45.61%), Postives = 34/57 (59.65%), Query Frame = 1
Query:   40 WREAIDTLDRMRSRGVPPDTYSWNTAISACGRVGEWEQALKLLARMEESGSEAHPDI 210
            W EAI  L  +  +G   D Y++   I  CGR  +WE AL+LLARME+ G E  PD+
Sbjct:   51 WLEAIKHLGVLEKKG-EADVYAYIATIGVCGRGRQWENALRLLARMEKQGIE--PDV 104          
BLAST of mRNA_F-distichus_contig98132.19252.1 vs. uniprot
Match: A0A7S2ALK4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2ALK4_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 3.620e-6
Identity = 20/39 (51.28%), Postives = 29/39 (74.36%), Query Frame = 1
Query:   64 DRMRSRGVPPDTYSWNTAISACGRVGEWEQALKLLARME 180
            D MR  GV P+  S+N AISACG+ G+WE+A+++L  M+
Sbjct:    1 DEMRDNGVNPNVVSFNAAISACGKAGQWEKAIEVLQMMQ 39          
BLAST of mRNA_F-distichus_contig98132.19252.1 vs. uniprot
Match: A0A1Q9EAE9_SYMMI (Pentatricopeptide repeat-containing protein, chloroplastic n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9EAE9_SYMMI)

HSP 1 Score: 51.6 bits (122), Expect = 1.220e-5
Identity = 28/72 (38.89%), Postives = 40/72 (55.56%), Query Frame = 1
Query:   40 WREAIDTLDRMRSRGVPPDTYSWNTAISACGR-VGEWEQALKLLARMEESGSEAHPDIFSYNGAIGAAAKAG 252
            W      LD MR RG+ PD + +N+A+SAC + +  WE  L+LL +MEE       D+ S++  I A  K G
Sbjct:  153 WPRGTFLLDAMRQRGLLPDIFGFNSAVSACEKAIAGWEVPLQLLQQMEEL--RVVKDVVSFSSTIXAHEKVG 222          
BLAST of mRNA_F-distichus_contig98132.19252.1 vs. uniprot
Match: A0A7S2N150_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2N150_9DINO)

HSP 1 Score: 48.9 bits (115), Expect = 1.750e-5
Identity = 22/42 (52.38%), Postives = 29/42 (69.05%), Query Frame = 1
Query:   70 MRSRGVPPDTYSWNTAISACGRVGEWEQALKLLARMEESGSE 195
            MR R V PD  + NTAISACG+ G+WE +L  LA+M + G +
Sbjct:    1 MRERKVGPDVITHNTAISACGKGGQWELSLAALAQMLQRGPD 42          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig98132.19252.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A7S0H3W9_9EUKA6.290e-842.37Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
D8LMP8_ECTSI3.030e-744.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KUL4_9PHAE4.170e-745.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LG06_ECTSI5.610e-738.03Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A813LBA2_POLGL7.640e-738.46Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A812QE05_9DINO1.010e-641.67Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
A0A7S2CPF0_9STRA3.180e-645.61Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2ALK4_9STRA3.620e-651.28Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A1Q9EAE9_SYMMI1.220e-538.89Pentatricopeptide repeat-containing protein, chlor... [more]
A0A7S2N150_9DINO1.750e-552.38Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig98132contigF-distichus_contig98132:1346..1603 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size258
Cds size258
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931160.890687-CDS-F-distichus_contig98132:1345..16031622931160.890687-CDS-F-distichus_contig98132:1345..1603Fucus distichus monoicousCDSF-distichus_contig98132 1346..1603 -
1690886184.5102348-CDS-F-distichus_contig98132:1345..16031690886184.5102348-CDS-F-distichus_contig98132:1345..1603Fucus distichus monoicousCDSF-distichus_contig98132 1346..1603 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig98132.19252.1prot_F-distichus_contig98132.19252.1Fucus distichus monoicouspolypeptideF-distichus_contig98132 1346..1603 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig98132.19252.1

>prot_F-distichus_contig98132.19252.1 ID=prot_F-distichus_contig98132.19252.1|Name=mRNA_F-distichus_contig98132.19252.1|organism=Fucus distichus monoicous|type=polypeptide|length=86bp
INSTVGEFIACVRWREAIDTLDRMRSRGVPPDTYSWNTAISACGRVGEWE
QALKLLARMEESGSEAHPDIFSYNGAIGAAAKAGR*
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mRNA from alignment at F-distichus_contig98132:1346..1603-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig98132.19252.1 ID=mRNA_F-distichus_contig98132.19252.1|Name=mRNA_F-distichus_contig98132.19252.1|organism=Fucus distichus monoicous|type=mRNA|length=258bp|location=Sequence derived from alignment at F-distichus_contig98132:1346..1603- (Fucus distichus monoicous)
ATAAATAGTACTGTTGGGGAATTTATCGCGTGCGTTAGGTGGAGAGAAGC AATCGATACGCTTGATCGAATGAGGAGCAGGGGAGTCCCTCCAGACACCT ATTCCTGGAACACCGCTATCTCGGCATGTGGAAGAGTTGGTGAATGGGAG CAGGCCCTGAAACTGTTGGCAAGGATGGAAGAGAGCGGATCCGAGGCACA CCCTGACATATTCAGCTACAACGGCGCAATCGGTGCCGCGGCCAAGGCTG GACGGTAA
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Coding sequence (CDS) from alignment at F-distichus_contig98132:1346..1603-

>mRNA_F-distichus_contig98132.19252.1 ID=mRNA_F-distichus_contig98132.19252.1|Name=mRNA_F-distichus_contig98132.19252.1|organism=Fucus distichus monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at F-distichus_contig98132:1346..1603- (Fucus distichus monoicous)
ATAAATAGTACTGTTGGGGAATTTATCGCGTGCGTTAGGTGGAGAGAAGC
AATCGATACGCTTGATCGAATGAGGAGCAGGGGAGTCCCTCCAGACACCT
ATTCCTGGAACACCGCTATCTCGGCATGTGGAAGAGTTGGTGAATGGGAG
CAGGCCCTGAAACTGTTGGCAAGGATGGAAGAGAGCGGATCCGAGGCACA
CCCTGACATATTCAGCTACAACGGCGCAATCGGTGCCGCGGCCAAGGCTG
GACGGTAAATAAATAGTACTGTTGGGGAATTTATCGCGTGCGTTAGGTGG
AGAGAAGCAATCGATACGCTTGATCGAATGAGGAGCAGGGGAGTCCCTCC
AGACACCTATTCCTGGAACACCGCTATCTCGGCATGTGGAAGAGTTGGTG
AATGGGAGCAGGCCCTGAAACTGTTGGCAAGGATGGAAGAGAGCGGATCC
GAGGCACACCCTGACATATTCAGCTACAACGGCGCAATCGGTGCCGCGGC
CAAGGCTGGACGGTAA
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