mRNA_F-distichus_contig98096.19246.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig98096.19246.1
Unique NamemRNA_F-distichus_contig98096.19246.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig98096.19246.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig98096contigF-distichus_contig98096:611..1415 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size568
Cds size567
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931159.7420197-CDS-F-distichus_contig98096:610..9041622931159.7420197-CDS-F-distichus_contig98096:610..904Fucus distichus monoicousCDSF-distichus_contig98096 611..904 +
1690886184.0231833-CDS-F-distichus_contig98096:610..9041690886184.0231833-CDS-F-distichus_contig98096:610..904Fucus distichus monoicousCDSF-distichus_contig98096 611..904 +
1622931159.7639978-CDS-F-distichus_contig98096:1142..14151622931159.7639978-CDS-F-distichus_contig98096:1142..1415Fucus distichus monoicousCDSF-distichus_contig98096 1143..1415 +
1690886184.0336363-CDS-F-distichus_contig98096:1142..14151690886184.0336363-CDS-F-distichus_contig98096:1142..1415Fucus distichus monoicousCDSF-distichus_contig98096 1143..1415 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig98096.19246.1prot_F-distichus_contig98096.19246.1Fucus distichus monoicouspolypeptideF-distichus_contig98096 611..1415 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig98096.19246.1

>prot_F-distichus_contig98096.19246.1 ID=prot_F-distichus_contig98096.19246.1|Name=mRNA_F-distichus_contig98096.19246.1|organism=Fucus distichus monoicous|type=polypeptide|length=189bp
ERLAAARVYASSISVQRLLSSASDDSVSTEPSPLAIRTPKELSAVCTALL
PTLYGGDDPFRLSRESGLEATSGRGTVYSTTSGGSADVEGLLEAVLSKVD
ADLPSTEAWESLKHFLLEEDRTTDAAASTSMVCGKRLAAADAILLRLRIS
ARSGWAGGRKGRALPLLRVIAVDFIVSLVRLEATPLVLH
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mRNA from alignment at F-distichus_contig98096:611..1415+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig98096.19246.1 ID=mRNA_F-distichus_contig98096.19246.1|Name=mRNA_F-distichus_contig98096.19246.1|organism=Fucus distichus monoicous|type=mRNA|length=805bp|location=Sequence derived from alignment at F-distichus_contig98096:611..1415+ (Fucus distichus monoicous)
GAACGACTAGCCGCGGCCCGGGTGTACGCCTCTTCCATAAGCGTCCAACG
CTTGTTGTCGAGCGCCAGTGATGACTCGGTTTCAACGGAACCGTCGCCCC
TGGCCATACGCACGCCCAAGGAGCTGTCGGCCGTGTGCACGGCTCTGCTT
CCGACCCTCTACGGCGGAGACGACCCTTTCCGCCTATCTCGCGAGAGCGG
TCTCGAGGCTACGTCGGGGCGAGGCACGGTGTACTCAACGACGAGCGGTG
GTTCGGCAGACGTGGAAGGGTTACTCGAGGCGGTGCTTTCGAAGGTATTT
CCCTTACTGGTAAAGCAATTTGGACGCTTTTTGGAGCTTTCCACCCTCTC
CTGCAGTGACCCGTGCTAATCGATGCGGTTTATATATCTTACGTAAGGCG
TTTTTTTAGGCCAATACCGAAAATATTATAGGCATTAGCTCCCTGACCCC
CTAAAAAAAACCGGGCTCACCAGGCGCTAATTTCGTTTTTGGTATATTTT
TTGCCGCCTTTGCTGGTCTTGGCCTGAGTCAGGTTGACGCGGACTTGCCC
TCTACCGAGGCGTGGGAGTCACTCAAGCACTTCTTGCTGGAGGAGGACCG
CACAACCGACGCGGCCGCGTCAACGTCGATGGTGTGCGGCAAAAGACTGG
CCGCGGCAGACGCCATCCTCTTGCGCCTCAGAATCTCCGCGAGGTCGGGC
TGGGCCGGCGGCCGGAAAGGAAGAGCCCTCCCGCTCTTGCGCGTGATCGC
GGTAGATTTCATCGTGTCTCTCGTGCGTCTAGAGGCCACGCCGCTGGTGC
TTCAC
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Coding sequence (CDS) from alignment at F-distichus_contig98096:611..1415+

>mRNA_F-distichus_contig98096.19246.1 ID=mRNA_F-distichus_contig98096.19246.1|Name=mRNA_F-distichus_contig98096.19246.1|organism=Fucus distichus monoicous|type=CDS|length=1134bp|location=Sequence derived from alignment at F-distichus_contig98096:611..1415+ (Fucus distichus monoicous)
GAACGACTAGCCGCGGCCCGGGTGTACGCCTCTTCCATAAGCGTCCAACG
CTTGTTGTCGAGCGCCAGTGATGACTCGGTTTCAACGGAACCGTCGCCCC
TGGCCATACGCACGCCCAAGGAGCTGTCGGCCGTGTGCACGGCTCTGCTT
CCGACCCTCTACGGCGGAGACGACCCTTTCCGCCTATCTCGCGAGAGCGG
TCTCGAGGCTACGTCGGGGCGAGGCACGGTGTACTCAACGACGAGCGGTG
GTTCGGCAGACGTGGAAGGGTTACTCGAGGCGGTGCTTTCGAAGGAACGA
CTAGCCGCGGCCCGGGTGTACGCCTCTTCCATAAGCGTCCAACGCTTGTT
GTCGAGCGCCAGTGATGACTCGGTTTCAACGGAACCGTCGCCCCTGGCCA
TACGCACGCCCAAGGAGCTGTCGGCCGTGTGCACGGCTCTGCTTCCGACC
CTCTACGGCGGAGACGACCCTTTCCGCCTATCTCGCGAGAGCGGTCTCGA
GGCTACGTCGGGGCGAGGCACGGTGTACTCAACGACGAGCGGTGGTTCGG
CAGACGTGGAAGGGTTACTCGAGGCGGTGCTTTCGAAGGTTGACGCGGAC
TTGCCCTCTACCGAGGCGTGGGAGTCACTCAAGCACTTCTTGCTGGAGGA
GGACCGCACAACCGACGCGGCCGCGTCAACGTCGATGGTGTGCGGCAAAA
GACTGGCCGCGGCAGACGCCATCCTCTTGCGCCTCAGAATCTCCGCGAGG
TCGGGCTGGGCCGGCGGCCGGAAAGGAAGAGCCCTCCCGCTCTTGCGCGT
GATCGCGGTAGATTTCATCGTGTCTCTCGTGCGTCTAGAGGCCACGCCGC
TGGTGCTTCACGTTGACGCGGACTTGCCCTCTACCGAGGCGTGGGAGTCA
CTCAAGCACTTCTTGCTGGAGGAGGACCGCACAACCGACGCGGCCGCGTC
AACGTCGATGGTGTGCGGCAAAAGACTGGCCGCGGCAGACGCCATCCTCT
TGCGCCTCAGAATCTCCGCGAGGTCGGGCTGGGCCGGCGGCCGGAAAGGA
AGAGCCCTCCCGCTCTTGCGCGTGATCGCGGTAGATTTCATCGTGTCTCT
CGTGCGTCTAGAGGCCACGCCGCTGGTGCTTCAC
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