mRNA_F-distichus_contig97953.19237.1 (mRNA) Fucus distichus monoicous
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Overview
Homology
BLAST of mRNA_F-distichus_contig97953.19237.1 vs. uniprot
Match: D7FTM8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTM8_ECTSI) HSP 1 Score: 258 bits (660), Expect = 7.410e-77 Identity = 132/173 (76.30%), Postives = 151/173 (87.28%), Query Frame = 1
Query: 1 SRRRGGRRKGDRIVATSATLGDGLWEKNTVDGILSAVGTRLVLSDTVTLRVERPLSPRQLAAARFQETVTQTFEVTLERPPGLVLEQVWDSSGNGEPDGIVVAGITPGSPADLSGAVEPGDRVVAVSSSLGNNMWPYKRLEGVLSAIELHIGNTIGIRFQRVVEMGSWKDPSS 519
S R G R GDRIVATSATLGD LWEKNTVDGILSAVGTRLV S+TVTLRVER L +QLAAARF+E+VTQT+EVTL+RPPGL+LEQVWD +G+G+ D +VVAGI PGSPA+ SGAVE GD VVAVSSS+GN MWPY++LEG LSAIE HIG+TI IRFQR V+MG+WKDPS+
Sbjct: 316 SAERQGVRAGDRIVATSATLGDVLWEKNTVDGILSAVGTRLVFSNTVTLRVERALDAQQLAAARFRESVTQTYEVTLQRPPGLILEQVWDPAGSGQADSVVVAGIVPGSPAESSGAVECGDTVVAVSSSIGNIMWPYRQLEGALSAIERHIGSTINIRFQRTVQMGAWKDPSN 488
BLAST of mRNA_F-distichus_contig97953.19237.1 vs. uniprot
Match: A0A7S4JAT6_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JAT6_9STRA) HSP 1 Score: 107 bits (268), Expect = 5.660e-24 Identity = 67/168 (39.88%), Postives = 103/168 (61.31%), Query Frame = 1
Query: 16 GRRKGDRIVATSATLGDGLWEKNTVDGILSAVGTRLVLSDTVTLRVERPLSPRQLAAARFQETVTQTFEVTLERPPGLVLEQVWDSSGNGEPDGIVVAGITPGSPADLSGAVEPGDRVVAVSSSLGNNMWPYKRLEGVLSAIELHI-GNTIGIRFQRVVEMGSWKDPS 516
G R GD ++ATSATLGD LW K+T+DG+ SA+ +R + S T +++ R + ++A V + FE+ L RP G+ +V D +G +VVA + + + L AV+ GDRVVAV SSLGN MWP +EG++SA + G + ++F+RVV++G + + S
Sbjct: 16 GVRVGDEVMATSATLGDKLWPKSTLDGVRSALSSRKITSSTFMVQLRRSGASACVSAPE----VVEEFELQLTRPMGI---EVNDDDVSGF---VVVADLAEDAQSALKDAVKVGDRVVAVDSSLGNRMWPVSNVEGLVSACTSRLPGQPVRLKFERVVDVGEFSNGS 173
BLAST of mRNA_F-distichus_contig97953.19237.1 vs. uniprot
Match: A0A8J2SI82_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SI82_9STRA) HSP 1 Score: 103 bits (256), Expect = 2.340e-22 Identity = 72/167 (43.11%), Postives = 102/167 (61.08%), Query Frame = 1
Query: 16 GRRKGDRIVATSATLGDGLWEKNTVDGILSAVGTRLVLSDT-VTLRVERPLSPRQLAAA--RFQETVTQTFEVTLERPPGLVLEQVWDSSGNGEPDGIVVAGITPGSPADLS-GAVEPGDRVVAVSSSLGNNMWPYKRLEGVLSAIELHIGNTIGIRFQRVVEMGSW 504
G R GDR+VATSATLGD +W K+++ G++SAV +RL L + V+LR+ER L ++A A R +E+V + +EV L++P GL L+ V +G P VA I G A+ S G V GDRVV V S+ G M+P + VL+A L + I +R +R V +G W
Sbjct: 124 GCRAGDRVVATSATLGDAMWPKSSIAGVVSAVRSRLQLGNQKVSLRIERSLDDDEVALAELRSRESVKERWEVELQKPLGLTLKNV-----DGTP---TVAQIKKGGSAERSKGRVRIGDRVVGVESAFGGRMYPVTTTKEVLAAAALPTPS-ISLRLERDVRVGPW 281
BLAST of mRNA_F-distichus_contig97953.19237.1 vs. uniprot
Match: A0A4D9CSN9_9STRA (PDZ domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CSN9_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 4.410e-20 Identity = 67/160 (41.88%), Postives = 90/160 (56.25%), Query Frame = 1
Query: 16 GRRKGDRIVATSATLGDGLWEKNTVDGILSAVGTRLVLSDTVTLRVERPLSPRQLAAARFQETVTQTFEVTLERPPGLVLEQVWDSSGNGEPDGIVVAGITPGSPADLSGAVEPGDRVVAVSSSLGNNMWPYKRLEGVLSAIELHIGNTIGIRFQRVVEM 495
G R GDRIVA SAT+G+ LW K T+ G+ SA+ +R SD +T VER L+ + + FEV LERP L L Q N E G+ V + L ++P DRVVAVS+SLGN MW L+GVLSA+ IG+ + ++F+R E+
Sbjct: 194 GLRVGDRIVAASATVGNKLWTKTTLVGVESAINSRFRFSDDITFCVERTLA-QDAGDDSIASRQVEVFEVELERPVPLELMQE-----NAE-GGVFVRRVLKADCEALR-RIQPYDRVVAVSASLGNRMWRTNSLDGVLSALCTRIGSKVRLQFERSPEV 345
BLAST of mRNA_F-distichus_contig97953.19237.1 vs. uniprot
Match: A0A7S3VBB5_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VBB5_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 1.130e-19 Identity = 58/165 (35.15%), Postives = 97/165 (58.79%), Query Frame = 1
Query: 16 GRRKGDRIVATSATLGDGLWEKNTVDGILSAVGTRLVLSDTVTLRVERPLSPRQLAAARF--QETVTQTFEVTLERPPGLVLEQVWDSSGNGEPDGIVVAGITPGSPADLSGAVEPGDRVVAVSSSLGNNMWPYKRLEGVLSAIELHI-GNTIGIRFQRVVEMGS 501
G R GD ++ATSAT+GD +W K++++GI SA+ +R V+S ++ + +R A F + Q FE++L RP G+ +E D + ++G T P ++ + GDR++AV S+LG MWP ++GV+S++ + G T+ ++F+RVVE GS
Sbjct: 202 GVRAGDFVIATSATVGDKMWPKSSLEGIRSAISSRKVISSSMQVEFQR--------AGTFVPDAELVQEFELSLSRPMGIHIEDTHDGY-------VQISGFTEDVPDFVTHNLRVGDRIIAVDSTLGK-MWPVSTVDGVVSSVTTRLPGQTVQLKFERVVEDGS 350
BLAST of mRNA_F-distichus_contig97953.19237.1 vs. uniprot
Match: B7G0R1_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G0R1_PHATC) HSP 1 Score: 89.7 bits (221), Expect = 1.090e-17 Identity = 64/170 (37.65%), Postives = 93/170 (54.71%), Query Frame = 1
Query: 28 GDRIVATSATLGDGLWEKNTVDGILSAVGTRLVLS----------DTVTLRVERPLSPRQLAAARFQETVT----QTFEVTLERPPGLVLEQVWDSSGNGEPDG-IVVAGITPGSPADLSGAVEPGDRVVAVSSSLGNNMWPYKRLEGVLSAIELHI-GNTIGIRFQRVV 489
GD + A SAT GD +W ++T++GI SA+ +R L+ +TV + ++RP+ P + R TVT FE+TL RP G+ ++ E DG +VV G P + + AV+ GDRVVAV SSLG MWP ++GV SA + G + +RF+R V
Sbjct: 241 GDIVHAVSATWGDAVWPQSTLEGIASALTSRQTLARTTQPRNNAANTVRMDLQRPVLPAASSTDRTTATVTAGVRNQFELTLPRPLGIDID---------ERDGYVVVTGFEPMASTLVRMAVQVGDRVVAVDSSLGGTMWPVSTVQGVQSACTGRLPGKPVTLRFERPV 401
BLAST of mRNA_F-distichus_contig97953.19237.1 vs. uniprot
Match: A0A1E7FWH5_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FWH5_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 1.590e-17 Identity = 55/157 (35.03%), Postives = 88/157 (56.05%), Query Frame = 1
Query: 16 GRRKGDRIVATSATLGDGLWEKNTVDGILSAVGTRLVLSDTVTLRVERPLSPRQLAAARFQETVTQTFEVTLERPPGLVLEQVWDSSGNGEPDGIVVAGITPGSPADLSGAVEPGDRVVAVSSSLGNNMWPYKRLEGVLSAIELHI-GNTIGIRFQR 483
G R GD + +SAT+G+ +W K+T+DG+ SAV +R +++++ +R + V +E+TL RP GL L++ D + + G TP + + AV+ GDRV+AV SSLG+ MWP +EGV+S++ + G I RF+R
Sbjct: 276 GVRPGDILKTSSATIGNSMWPKSTLDGVKSAVLSRKAVAESIQFEFQR---------LDAETVVDNQYELTLARPIGLNLKETEDGY-------VEIVGFTPKASKLVRYAVKVGDRVLAVDSSLGDRMWPVSTVEGVISSVTARLPGQQITFRFER 416
BLAST of mRNA_F-distichus_contig97953.19237.1 vs. uniprot
Match: B8BQN1_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BQN1_THAPS) HSP 1 Score: 88.2 bits (217), Expect = 3.930e-17 Identity = 59/162 (36.42%), Postives = 89/162 (54.94%), Query Frame = 1
Query: 10 RGGRRKGDRIVATSATLGDGLWEKNTVDGILSAVGTRLVLSDTVTLRVERPLSPRQLAAARFQETVTQTFEVTLERPPGLVLEQVWDSSGNGEPDGIVVAGITPGSPADLSGAVEPGDRVVAVSSSLGNNMWPYKRLEGVLSAIELHI-GNTIGIRFQRVVE 492
R G R GD + ATSAT+G+ LW K+T+DG+ SA+ +R V+S + +R L + E +FE+ L RP G+ +E+ D +VV GI+ + + ++ + GDRVV V SSLG MWP +G+ SA+ + G + I F+RV E
Sbjct: 274 RAGIRAGDVLTATSATMGNKLWPKSTLDGVRSAISSRKVISPMMDFEFKR-LGSNEEGGDDLGEI--SSFELNLSRPIGINVEETDDGY-------VVVTGISGKASSVVTDNLRVGDRVVTVESSLGGKMWPVYNTDGLTSAVTSRLPGQPVRIGFERVEE 425
BLAST of mRNA_F-distichus_contig97953.19237.1 vs. uniprot
Match: A0A448ZNB7_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZNB7_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 5.440e-17 Identity = 55/157 (35.03%), Postives = 84/157 (53.50%), Query Frame = 1
Query: 16 GRRKGDRIVATSATLGDGLWEKNTVDGILSAVGTRLVLSDTVTLRVERPLSPRQLAAARFQETVTQTFEVTLERPPGLVLEQVWDSSGNGEPDGIVVAGITPGSPADLSGAVEPGDRVVAVSSSLGNNMWPYKRLEGVLSAIELHI-GNTIGIRFQR 483
G R GD + TSATLG+ +W K+T++G+ SA+ +R +++++ +R ET FE+TL RP G L++ D + + G TP + AV GDR++AV SSLG+ MWP EG++SA+ + G I RF+R
Sbjct: 230 GVRPGDVLKTTSATLGNQMWPKSTLEGVKSAITSRKAVAESMEFEFQR-----------LVETEDNRFELTLTRPIGFNLKETEDGY-------VEIIGFTPKASKLARKAVRVGDRILAVDSSLGDRMWPVSTTEGLISAVTARLPGQKITFRFER 368
BLAST of mRNA_F-distichus_contig97953.19237.1 vs. uniprot
Match: A0A7S2P0X6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P0X6_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 6.930e-16 Identity = 52/121 (42.98%), Postives = 74/121 (61.16%), Query Frame = 1
Query: 28 GDRIVATSATLGDGLWEKNTVDGILSAVGTRLVLSDTVTLRVERPLSPRQLAAARFQETVTQTFEVTLERPPGLVLEQVWDSSGNGEPDGIVVAGITPGSPADLSGAVEPGDRVVAVSSSL 390
GD +V TSAT+G+ +W K+T+DGI SA+ +R V+S +TLRV+R L +L AA V +TFE+ L RP G+ +E D +V+A T + + A++ GDRVVAV SSL
Sbjct: 80 GDILVGTSATVGEQIWPKSTLDGIRSAISSRKVMSSAITLRVKRSL---ELIAA---SEVVETFELLLTRPMGINVEDTVDGR-------VVIASFTDSPLSLVEEALKVGDRVVAVDSSL 187 The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig97953.19237.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 24
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-distichus_contig97953.19237.1 >prot_F-distichus_contig97953.19237.1 ID=prot_F-distichus_contig97953.19237.1|Name=mRNA_F-distichus_contig97953.19237.1|organism=Fucus distichus monoicous|type=polypeptide|length=173bp SRRRGGRRKGDRIVATSATLGDGLWEKNTVDGILSAVGTRLVLSDTVTLRback to top mRNA from alignment at F-distichus_contig97953:213..1728- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-distichus_contig97953.19237.1 ID=mRNA_F-distichus_contig97953.19237.1|Name=mRNA_F-distichus_contig97953.19237.1|organism=Fucus distichus monoicous|type=mRNA|length=1516bp|location=Sequence derived from alignment at F-distichus_contig97953:213..1728- (Fucus distichus monoicous)back to top Coding sequence (CDS) from alignment at F-distichus_contig97953:213..1728- >mRNA_F-distichus_contig97953.19237.1 ID=mRNA_F-distichus_contig97953.19237.1|Name=mRNA_F-distichus_contig97953.19237.1|organism=Fucus distichus monoicous|type=CDS|length=1038bp|location=Sequence derived from alignment at F-distichus_contig97953:213..1728- (Fucus distichus monoicous)back to top |