mRNA_F-distichus_contig97918.19233.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig97918.19233.1
Unique NamemRNA_F-distichus_contig97918.19233.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig97918.19233.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 3.420e-12
Identity = 31/72 (43.06%), Postives = 49/72 (68.06%), Query Frame = 1
Query:   10 VTNPQLWHRRLGHLNKRSVELMQRRDGNSIAFDGSVNHCDVCAVGKIHQLAPPKKAKHADITAPFQNVYGDL 225
            V +  LWHRR+GH++ RS++++++  GN + ++G ++ CDVCAVG   Q   PK+A + D + PFQ V  DL
Sbjct:  263 VKSAALWHRRVGHVHGRSLDILRKVQGNGVEYNGELSACDVCAVGNSKQQNHPKRASY-DASRPFQLVTTDL 333          
BLAST of mRNA_F-distichus_contig97918.19233.1 vs. uniprot
Match: A0A6H5JT61_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT61_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 1.660e-11
Identity = 32/73 (43.84%), Postives = 45/73 (61.64%), Query Frame = 1
Query:    7 VVTNPQLWHRRLGHLNKRSVELMQRRDGNSIAFDGSVNHCDVCAVGKIHQLAPPKKAKHADITAPFQNVYGDL 225
               N    HRRLGHLN RS++L+++++ N + F  S+  CD+CA+ K  QLA PKK    + TAP   VY D+
Sbjct:  102 TTVNANTPHRRLGHLNFRSMKLLRKKEENEVDFSDSMTPCDICAISKSTQLAHPKKTSR-ETTAPMLLVYTDI 173          
BLAST of mRNA_F-distichus_contig97918.19233.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 7.970e-11
Identity = 28/61 (45.90%), Postives = 43/61 (70.49%), Query Frame = 1
Query:   25 LWHRRLGHLNKRSVELMQRRDGNSIAFDGSVNHCDVCAVGKIHQLAPPKKAKHADITAPFQ 207
            LWHRRLGH++ RS++++++ D N + + G +  CDVCA+GK  Q   PKKA + D++  FQ
Sbjct:   39 LWHRRLGHIDSRSLDVLRKIDDNGVDYTGPMETCDVCAIGKSSQRPHPKKATY-DVSRHFQ 98          
BLAST of mRNA_F-distichus_contig97918.19233.1 vs. uniprot
Match: A0A6H5KM42_9PHAE (gag_pre-integrs domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM42_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.730e-9
Identity = 28/66 (42.42%), Postives = 40/66 (60.61%), Query Frame = 1
Query:   25 LWHRRLGHLNKRSVELMQRRDGNSIAFDGSVNHCDVCAVGKIHQLAPPKKAKHADITAPFQNVYGD 222
            LWHRRLGH+N R++E+++R     + +DG V+ CD C + K H+ AP  K     +T P Q V  D
Sbjct:   57 LWHRRLGHINPRAMEILRRNPATGVKYDGPVSPCDNCQITK-HKKAPVPKKTSRVLTKPGQLVQFD 121          
BLAST of mRNA_F-distichus_contig97918.19233.1 vs. uniprot
Match: A0A6H5KXM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM1_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 1.800e-9
Identity = 27/71 (38.03%), Postives = 45/71 (63.38%), Query Frame = 1
Query:   10 VTNPQLWHRRLGHLNKRSVELMQRRDGNSIAFDGSVNHCDVCAVGKIHQLAPPKKAKHADITAPFQNVYGD 222
            V +  LWHRR+GH+N +S++++++   N + + G+VN C VC +GK  Q   PK+  +  +  PFQ+V  D
Sbjct:  283 VESADLWHRRMGHINGKSLDVLRKEPVNGVDYTGNVNDCCVCPLGKSAQQPHPKQVTYG-VLRPFQHVSVD 352          
BLAST of mRNA_F-distichus_contig97918.19233.1 vs. uniprot
Match: A0A6H5JKW9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKW9_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 1.820e-9
Identity = 27/71 (38.03%), Postives = 44/71 (61.97%), Query Frame = 1
Query:   10 VTNPQLWHRRLGHLNKRSVELMQRRDGNSIAFDGSVNHCDVCAVGKIHQLAPPKKAKHADITAPFQNVYGD 222
            V +  LWHRR+GH+N +S++++++   N + + G V  C VC +GK  Q   PK+A +  +  PFQ+V  D
Sbjct:  638 VESADLWHRRMGHINGKSLDVLRKEPVNGVDYTGDVKDCSVCPLGKSAQQPHPKQATYG-VLRPFQHVSVD 707          
BLAST of mRNA_F-distichus_contig97918.19233.1 vs. uniprot
Match: A0A6H5JVF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVF6_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 3.380e-9
Identity = 26/68 (38.24%), Postives = 44/68 (64.71%), Query Frame = 1
Query:   10 VTNPQLWHRRLGHLNKRSVELMQRRDGNSIAFDGSVNHCDVCAVGKIHQLAPPKKAKHADITAPFQNV 213
            V +  LWHRR+G +N +S+++++++  NS+ + G V  C VC +GK  Q   PK+A +  +  PFQ+V
Sbjct:  750 VESADLWHRRMGRINGKSLDVLRKKQVNSVDYTGDVKDCSVCPLGKSAQQPHPKQATYG-VLRPFQHV 816          
BLAST of mRNA_F-distichus_contig97918.19233.1 vs. uniprot
Match: A0A6H5JBV6_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV6_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 3.400e-9
Identity = 27/71 (38.03%), Postives = 43/71 (60.56%), Query Frame = 1
Query:   10 VTNPQLWHRRLGHLNKRSVELMQRRDGNSIAFDGSVNHCDVCAVGKIHQLAPPKKAKHADITAPFQNVYGD 222
            V +  LWHRR+GH+N +S++++++   N +     V  C  CA+GK  Q   PK+A + D+  PFQ V+ D
Sbjct:  523 VESANLWHRRMGHINSKSLDILRKAPNNGVDHTEDVKDCGPCALGKSTQQPHPKEATY-DVKRPFQLVFVD 592          
BLAST of mRNA_F-distichus_contig97918.19233.1 vs. uniprot
Match: A0A6H5KP38_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP38_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 3.440e-9
Identity = 28/72 (38.89%), Postives = 42/72 (58.33%), Query Frame = 1
Query:    7 VVTNPQLWHRRLGHLNKRSVELMQRRDGNSIAFDGSVNHCDVCAVGKIHQLAPPKKAKHADITAPFQNVYGD 222
            +  +  LWHRRLGH+N R++E+++R     + +DG V+ CD C + K H+ AP  K     +T P Q V  D
Sbjct:  526 ISVSADLWHRRLGHINPRAMEILRRNPATGVKYDGPVSPCDNCQITK-HKKAPVPKKTSRVLTKPGQLVQFD 596          
BLAST of mRNA_F-distichus_contig97918.19233.1 vs. uniprot
Match: A0A6H5K6T1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6T1_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 6.150e-9
Identity = 28/66 (42.42%), Postives = 40/66 (60.61%), Query Frame = 1
Query:   25 LWHRRLGHLNKRSVELMQRRDGNSIAFDGSVNHCDVCAVGKIHQLAPPKKAKHADITAPFQNVYGD 222
            LWHRRLGH+N R++E+++R     + +DG V+ CD C + K H+ AP  K     +T P Q V  D
Sbjct:  243 LWHRRLGHINPRAMEILRRNPATGVKYDGPVSPCDNCQITK-HKKAPVPKKTSRVLTKPGQLVQFD 307          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig97918.19233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1J1_9PHAE3.420e-1243.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JT61_9PHAE1.660e-1143.84Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KBU1_9PHAE7.970e-1145.90CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KM42_9PHAE1.730e-942.42gag_pre-integrs domain-containing protein (Fragmen... [more]
A0A6H5KXM1_9PHAE1.800e-938.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JKW9_9PHAE1.820e-938.03Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JVF6_9PHAE3.380e-938.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBV6_9PHAE3.400e-938.03Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KP38_9PHAE3.440e-938.89Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5K6T1_9PHAE6.150e-942.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig97918contigF-distichus_contig97918:1786..2010 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size225
Cds size225
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931158.235162-CDS-F-distichus_contig97918:1785..20101622931158.235162-CDS-F-distichus_contig97918:1785..2010Fucus distichus monoicousCDSF-distichus_contig97918 1786..2010 +
1690886183.4456098-CDS-F-distichus_contig97918:1785..20101690886183.4456098-CDS-F-distichus_contig97918:1785..2010Fucus distichus monoicousCDSF-distichus_contig97918 1786..2010 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig97918.19233.1prot_F-distichus_contig97918.19233.1Fucus distichus monoicouspolypeptideF-distichus_contig97918 1786..2010 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig97918.19233.1

>prot_F-distichus_contig97918.19233.1 ID=prot_F-distichus_contig97918.19233.1|Name=mRNA_F-distichus_contig97918.19233.1|organism=Fucus distichus monoicous|type=polypeptide|length=75bp
MNVVTNPQLWHRRLGHLNKRSVELMQRRDGNSIAFDGSVNHCDVCAVGKI
HQLAPPKKAKHADITAPFQNVYGDL
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mRNA from alignment at F-distichus_contig97918:1786..2010+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig97918.19233.1 ID=mRNA_F-distichus_contig97918.19233.1|Name=mRNA_F-distichus_contig97918.19233.1|organism=Fucus distichus monoicous|type=mRNA|length=225bp|location=Sequence derived from alignment at F-distichus_contig97918:1786..2010+ (Fucus distichus monoicous)
ATGAACGTGGTGACCAACCCACAGCTGTGGCATCGCCGGCTGGGACACCT CAACAAGAGAAGCGTGGAGCTCATGCAGAGGCGTGACGGCAACAGTATTG CTTTTGATGGCTCAGTCAATCACTGCGACGTCTGCGCCGTGGGGAAAATT CACCAGCTGGCTCCCCCCAAGAAGGCCAAACACGCCGACATCACGGCACC CTTTCAAAATGTTTATGGAGACTTG
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Coding sequence (CDS) from alignment at F-distichus_contig97918:1786..2010+

>mRNA_F-distichus_contig97918.19233.1 ID=mRNA_F-distichus_contig97918.19233.1|Name=mRNA_F-distichus_contig97918.19233.1|organism=Fucus distichus monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at F-distichus_contig97918:1786..2010+ (Fucus distichus monoicous)
ATGAACGTGGTGACCAACCCACAGCTGTGGCATCGCCGGCTGGGACACCT
CAACAAGAGAAGCGTGGAGCTCATGCAGAGGCGTGACGGCAACAGTATTG
CTTTTGATGGCTCAGTCAATCACTGCGACGTCTGCGCCGTGGGGAAAATT
CACCAGCTGGCTCCCCCCAAGAAGGCCAAACACGCCGACATCACGGCACC
CTTTCAAAATGTTTATGGAGACTTGATGAACGTGGTGACCAACCCACAGC
TGTGGCATCGCCGGCTGGGACACCTCAACAAGAGAAGCGTGGAGCTCATG
CAGAGGCGTGACGGCAACAGTATTGCTTTTGATGGCTCAGTCAATCACTG
CGACGTCTGCGCCGTGGGGAAAATTCACCAGCTGGCTCCCCCCAAGAAGG
CCAAACACGCCGACATCACGGCACCCTTTCAAAATGTTTATGGAGACTTG
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