mRNA_F-distichus_contig9790.19231.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig9790.19231.1
Unique NamemRNA_F-distichus_contig9790.19231.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig9790.19231.1 vs. uniprot
Match: D7FNR9_ECTSI (Lactoylglutathione lyase family protein / glyoxalase I family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNR9_ECTSI)

HSP 1 Score: 182 bits (463), Expect = 4.280e-57
Identity = 84/101 (83.17%), Postives = 91/101 (90.10%), Query Frame = 1
Query:    1 EFYLNVLGFEDDSSLRPDDKLPFDGAFVRAGTTQIHLMELPNPDPIDGRPEHGGRDRHVAFTIRDLEPLKGRLDKSGVIYTMSKSGRAALFCRDLDGNGFE 303
            EFY+NV GFED+S LRP  +LPFDGAFVRAG TQ+HLMELPNPDP+DGRPEHGGRDRHVAF+I DL PLKGRLD +GV YTMSKSGRAALFCRDLDGN FE
Sbjct:   63 EFYVNVFGFEDESPLRP--QLPFDGAFVRAGATQVHLMELPNPDPVDGRPEHGGRDRHVAFSIADLRPLKGRLDSAGVTYTMSKSGRAALFCRDLDGNAFE 161          
BLAST of mRNA_F-distichus_contig9790.19231.1 vs. uniprot
Match: A0A7S3RP39_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3RP39_9SPIT)

HSP 1 Score: 159 bits (403), Expect = 5.070e-48
Identity = 74/100 (74.00%), Postives = 83/100 (83.00%), Query Frame = 1
Query:    4 FYLNVLGFEDDSSLRPDDKLPFDGAFVRAGTTQIHLMELPNPDPIDGRPEHGGRDRHVAFTIRDLEPLKGRLDKSGVIYTMSKSGRAALFCRDLDGNGFE 303
            FY  VLG ED++ LRP+  LPF GAFVRAG  QIH+MELPNPDP+DGRPEHGGRDRH+A TI+DLEPLK +L    V+YTMSKSGRAALFCRDLDGN  E
Sbjct:   59 FYTAVLGMEDETHLRPN--LPFPGAFVRAGQQQIHIMELPNPDPVDGRPEHGGRDRHLALTIKDLEPLKKKLQAEDVVYTMSKSGRAALFCRDLDGNAME 156          
BLAST of mRNA_F-distichus_contig9790.19231.1 vs. uniprot
Match: A0A4D9CZQ2_9STRA (VOC domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CZQ2_9STRA)

HSP 1 Score: 154 bits (390), Expect = 6.920e-46
Identity = 72/100 (72.00%), Postives = 81/100 (81.00%), Query Frame = 1
Query:    4 FYLNVLGFEDDSSLRPDDKLPFDGAFVRAGTTQIHLMELPNPDPIDGRPEHGGRDRHVAFTIRDLEPLKGRLDKSGVIYTMSKSGRAALFCRDLDGNGFE 303
            FYL+VLGFEDD+ LRP   LPF GAFVR G  QIHLMELPNPDP  GRPEHGGRDRHVAFT+ +++PL  RL + GV +TMSKSGR A+FCRDLDGN  E
Sbjct:   60 FYLDVLGFEDDTHLRPST-LPFPGAFVRGGAQQIHLMELPNPDPTRGRPEHGGRDRHVAFTVDNIDPLMARLTEEGVPFTMSKSGRRAVFCRDLDGNALE 158          
BLAST of mRNA_F-distichus_contig9790.19231.1 vs. uniprot
Match: A0A5J4YUU9_PORPP (Protein YwkD n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YUU9_PORPP)

HSP 1 Score: 148 bits (373), Expect = 1.730e-43
Identity = 70/106 (66.04%), Postives = 81/106 (76.42%), Query Frame = 1
Query:    1 EFYLNVLGFEDDSSLRPDDKLPFDGAFVRAGTTQIHLMELPNPDPIDGRPEHGGRDRHVAFTIRDLEPLKGRLDKSGVIYTMSKSGRAALFCRDLDGNGFEVGDAK 318
            EFY+NVLG  DD++ RP+  L F GAFVRAG  QIHLMELPNPD  DGRPEHGGRD+HVA  + D++PL   L+ +GV YTMSKSGR ALFCRDLDGN  E  + K
Sbjct:   58 EFYVNVLGMSDDTATRPN--LAFGGAFVRAGEHQIHLMELPNPDAKDGRPEHGGRDKHVALNVEDIDPLVESLNANGVFYTMSKSGRRALFCRDLDGNALEFIETK 161          
BLAST of mRNA_F-distichus_contig9790.19231.1 vs. uniprot
Match: A0A835Z9T1_9STRA (Lactoylglutathione lyase family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9T1_9STRA)

HSP 1 Score: 148 bits (373), Expect = 2.140e-43
Identity = 71/104 (68.27%), Postives = 81/104 (77.88%), Query Frame = 1
Query:    4 FYLNVLGFEDDSSLRPDDKLPFDGAFVRAGTTQIHLMELPNPDPIDGRPEHGGRDRHVAFTIRDLEPLKGRLDKSGVIYTMSKSGRAALFCRDLDGNGFEVGDA 315
            FY  VLGF+D++ LRP+  LPF GAFVRAG  QIHLMEL NPDP+DGRPEHGGRDRH+AFTIR L PL+  L + G  YT SKSGRAA+F RD DGN FE  +A
Sbjct:   65 FYTEVLGFQDETELRPN--LPFKGAFVRAGGQQIHLMELENPDPVDGRPEHGGRDRHLAFTIRSLAPLEAALKRHGRTYTRSKSGRAAIFTRDPDGNAFEFLEA 166          
BLAST of mRNA_F-distichus_contig9790.19231.1 vs. uniprot
Match: A0A7S2RGE4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RGE4_9STRA)

HSP 1 Score: 144 bits (364), Expect = 5.450e-42
Identity = 68/100 (68.00%), Postives = 80/100 (80.00%), Query Frame = 1
Query:    4 FYLNVLGFEDDSSLRPDDKLPFDGAFVRAGTTQIHLMELPNPDPIDGRPEHGGRDRHVAFTIRDLEPLKGRLDKSGVIYTMSKSGRAALFCRDLDGNGFE 303
            +Y +VLGF D+S LRP  KLP+ GAF+RAG  QIHLM+LPNPDPIDGRPEHGGRDRHVA ++ DL+PL  RL+   + +TMSKSGR ALFCRD DGN  E
Sbjct:   69 WYTSVLGFLDESHLRPT-KLPYPGAFLRAGDQQIHLMQLPNPDPIDGRPEHGGRDRHVALSVVDLDPLISRLNDQEIPFTMSKSGRRALFCRDPDGNAME 167          
BLAST of mRNA_F-distichus_contig9790.19231.1 vs. uniprot
Match: A0A7S1XHW6_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1XHW6_9RHOD)

HSP 1 Score: 141 bits (356), Expect = 5.360e-41
Identity = 64/100 (64.00%), Postives = 81/100 (81.00%), Query Frame = 1
Query:    4 FYLNVLGFEDDSSLRPDDKLPFDGAFVRAGTTQIHLMELPNPDPIDGRPEHGGRDRHVAFTIRDLEPLKGRLDKSGVIYTMSKSGRAALFCRDLDGNGFE 303
            FY +VLG +DD+++RP+  L F GAFVRAG+ QIHLMELPNPDP  GRP+HGGRD+HVA T+ +++PL   L+++GV YTMSKSGR ALFCRD+D N  E
Sbjct:   50 FYCDVLGMQDDTAVRPE--LAFGGAFVRAGSHQIHLMELPNPDPKTGRPQHGGRDKHVALTVDNIDPLVESLERNGVAYTMSKSGRRALFCRDVDSNALE 147          
BLAST of mRNA_F-distichus_contig9790.19231.1 vs. uniprot
Match: A0A8J6C8W0_DIALT (VOC domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C8W0_DIALT)

HSP 1 Score: 141 bits (356), Expect = 8.660e-41
Identity = 66/105 (62.86%), Postives = 77/105 (73.33%), Query Frame = 1
Query:    1 EFYLNVLGFEDDSSLRPDDKLPFDGAFVRAGTTQIHLMELPNPDPIDGRPEHGGRDRHVAFTIRDLEPLKGRLDKSGVIYTMSKSGRAALFCRDLDGNGFEVGDA 315
            +FY N+LG  DD++ RP   LPF GAFVR G  Q+HLMELPNPDPIDGRP HGGRDRH+A T+  +EPL+  LD  G  +TMS SGR ALFCRD DGN  E  +A
Sbjct:   61 DFYTNILGMGDDTAHRPST-LPFAGAFVRCGAHQLHLMELPNPDPIDGRPAHGGRDRHIAITVASIEPLRESLDAVGWAHTMSMSGRRALFCRDPDGNALEFMEA 164          
BLAST of mRNA_F-distichus_contig9790.19231.1 vs. uniprot
Match: A0A7S0VYU0_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VYU0_9CRYP)

HSP 1 Score: 141 bits (355), Expect = 1.340e-40
Identity = 68/106 (64.15%), Postives = 81/106 (76.42%), Query Frame = 1
Query:    1 EFYLNVLGFEDDSSLRPDDKLPFDGAFVRAGTTQIHLMELPNPDPIDGRPEHGGRDRHVAFTIRDLEPLKGRLDKSGVIYTMSKSGRAALFCRDLDGNGFEVGDAK 318
            EFY NVLG +D S LRP+  LP+DGAF+  G  QIHLM+LP+PDP +GRPEHGGRDRH+A TI+DL+PL+G L + GV YTMSKSGR ALFCRD   N  E  + K
Sbjct:   67 EFYTNVLGMKDVSELRPN--LPYDGAFLECGANQIHLMKLPDPDPREGRPEHGGRDRHLAVTIQDLDPLEGSLLEHGVAYTMSKSGRRALFCRDPYMNAIEFVEDK 170          
BLAST of mRNA_F-distichus_contig9790.19231.1 vs. uniprot
Match: A0A6U0W6J8_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0W6J8_9STRA)

HSP 1 Score: 136 bits (343), Expect = 1.220e-38
Identity = 65/102 (63.73%), Postives = 80/102 (78.43%), Query Frame = 1
Query:    1 EFYLNVLGFEDDSSLRPDDKLPFDGAFVR-AGTTQIHLMELPNPDPIDGRPEHGGRDRHVAFTIRDLEPLKGRLDKSGVIYTMSKSGRAALFCRDLDGNGFE 303
            +FY+NVLGF D+S LR + KLP+ GAF++ AG  QIHLM+LP+ DP DGRPEHGGRDRH+AF +  + PLK +L+  G+ YTMS SGRAALFCRD DGN  E
Sbjct:   78 DFYINVLGFTDESHLR-NPKLPYPGAFLKVAGGQQIHLMQLPSVDPKDGRPEHGGRDRHIAFFVSSIAPLKEKLEGLGIPYTMSMSGRAALFCRDPDGNAME 178          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig9790.19231.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNR9_ECTSI4.280e-5783.17Lactoylglutathione lyase family protein / glyoxala... [more]
A0A7S3RP39_9SPIT5.070e-4874.00Hypothetical protein n=1 Tax=Strombidinopsis acumi... [more]
A0A4D9CZQ2_9STRA6.920e-4672.00VOC domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A5J4YUU9_PORPP1.730e-4366.04Protein YwkD n=1 Tax=Porphyridium purpureum TaxID=... [more]
A0A835Z9T1_9STRA2.140e-4368.27Lactoylglutathione lyase family protein n=1 Tax=Tr... [more]
A0A7S2RGE4_9STRA5.450e-4268.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1XHW6_9RHOD5.360e-4164.00Hypothetical protein n=1 Tax=Erythrolobus australi... [more]
A0A8J6C8W0_DIALT8.660e-4162.86VOC domain-containing protein n=1 Tax=Diacronema l... [more]
A0A7S0VYU0_9CRYP1.340e-4064.15Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A6U0W6J8_9STRA1.220e-3863.73Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig9790contigF-distichus_contig9790:9284..9978 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score184.5
Seed ortholog evalue2.7e-44
Seed eggNOG ortholog2880.D7FNR9
KEGG koko:K08234
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
EggNOG OGs29DJB@1,2RKPE@2759
Ec32 ortholog descriptionlactoylglutathione lyase family protein / glyoxalase I family protein
Ec32 orthologEc-01_004500.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons2
Model size329
Cds size327
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931158.1102755-CDS-F-distichus_contig9790:9283..95081622931158.1102755-CDS-F-distichus_contig9790:9283..9508Fucus distichus monoicousCDSF-distichus_contig9790 9284..9508 -
1690886183.4115424-CDS-F-distichus_contig9790:9283..95081690886183.4115424-CDS-F-distichus_contig9790:9283..9508Fucus distichus monoicousCDSF-distichus_contig9790 9284..9508 -
1622931158.1307297-CDS-F-distichus_contig9790:9876..99781622931158.1307297-CDS-F-distichus_contig9790:9876..9978Fucus distichus monoicousCDSF-distichus_contig9790 9877..9978 -
1690886183.4235153-CDS-F-distichus_contig9790:9876..99781690886183.4235153-CDS-F-distichus_contig9790:9876..9978Fucus distichus monoicousCDSF-distichus_contig9790 9877..9978 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig9790.19231.1prot_F-distichus_contig9790.19231.1Fucus distichus monoicouspolypeptideF-distichus_contig9790 9284..9978 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig9790.19231.1

>prot_F-distichus_contig9790.19231.1 ID=prot_F-distichus_contig9790.19231.1|Name=mRNA_F-distichus_contig9790.19231.1|organism=Fucus distichus monoicous|type=polypeptide|length=109bp
EFYLNVLGFEDDSSLRPDDKLPFDGAFVRAGTTQIHLMELPNPDPIDGRP
EHGGRDRHVAFTIRDLEPLKGRLDKSGVIYTMSKSGRAALFCRDLDGNGF
EVGDAKKS*
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mRNA from alignment at F-distichus_contig9790:9284..9978-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig9790.19231.1 ID=mRNA_F-distichus_contig9790.19231.1|Name=mRNA_F-distichus_contig9790.19231.1|organism=Fucus distichus monoicous|type=mRNA|length=695bp|location=Sequence derived from alignment at F-distichus_contig9790:9284..9978- (Fucus distichus monoicous)
GAGTTTTACCTCAACGTCTTGGGCTTCGAGGACGATTCTTCCCTTCGACC TGATGACAAGCTGCCGTTCGACGGTGCATTCGTCCGGGCGGGGACAACGC AGGTTTAGACAAGCAGCCGCATTAGAGAGACAGAGTACGTGTGGGTGTGT GAGTGTGGGTGCATGTCGTAATCACGTTGAGCAGATTGGGCACCGACCGT GCAAGGTTGCCAATCCTCCTTGTGGTCAGCTGAAAAAAGAAAATCAATAC TACTACTCAGTGATGGTCCAAAAATTGACGAGATCGTGTGGTGTCATTGG ATTATCCGTCTCTTTGGGGAAATGTTAATCTCAGCTCTTGGACTTCATCC CCAGTTCTTCGCAGTGGTGAGAGCAAGCTTGAATTTTAGCTATGCAAGAA AACTGTTTTATGCTTCCTTTCACTATTTTTTGCCGACGCCTCCCTCTCTC TACGTTTGCCCTGCAAGTAGATCCATTTGATGGAGCTACCTAACCCTGAT CCAATCGACGGCCGGCCGGAGCACGGGGGGCGAGATCGGCACGTCGCCTT CACAATTCGAGACCTTGAACCCCTCAAGGGGCGCTTGGACAAATCAGGCG TCATCTACACGATGTCGAAGAGCGGCCGAGCGGCTCTCTTTTGTAGAGAC CTCGATGGCAACGGGTTCGAGGTTGGTGACGCAAAAAAATCGTGA
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Coding sequence (CDS) from alignment at F-distichus_contig9790:9284..9978-

>mRNA_F-distichus_contig9790.19231.1 ID=mRNA_F-distichus_contig9790.19231.1|Name=mRNA_F-distichus_contig9790.19231.1|organism=Fucus distichus monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at F-distichus_contig9790:9284..9978- (Fucus distichus monoicous)
GAGTTTTACCTCAACGTCTTGGGCTTCGAGGACGATTCTTCCCTTCGACC
TGATGACAAGCTGCCGTTCGACGGTGCATTCGTCCGGGCGGGGACAACGC
AGGAGTTTTACCTCAACGTCTTGGGCTTCGAGGACGATTCTTCCCTTCGA
CCTGATGACAAGCTGCCGTTCGACGGTGCATTCGTCCGGGCGGGGACAAC
GCAGATCCATTTGATGGAGCTACCTAACCCTGATCCAATCGACGGCCGGC
CGGAGCACGGGGGGCGAGATCGGCACGTCGCCTTCACAATTCGAGACCTT
GAACCCCTCAAGGGGCGCTTGGACAAATCAGGCGTCATCTACACGATGTC
GAAGAGCGGCCGAGCGGCTCTCTTTTGTAGAGACCTCGATGGCAACGGGT
TCGAGGTTGGTGACGCAAAAAAATCGTGAATCCATTTGATGGAGCTACCT
AACCCTGATCCAATCGACGGCCGGCCGGAGCACGGGGGGCGAGATCGGCA
CGTCGCCTTCACAATTCGAGACCTTGAACCCCTCAAGGGGCGCTTGGACA
AATCAGGCGTCATCTACACGATGTCGAAGAGCGGCCGAGCGGCTCTCTTT
TGTAGAGACCTCGATGGCAACGGGTTCGAGGTTGGTGACGCAAAAAAATC
GTGA
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