mRNA_F-distichus_contig97867.19229.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig97867.19229.1
Unique NamemRNA_F-distichus_contig97867.19229.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig97867.19229.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig97867contigF-distichus_contig97867:547..1381 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size549
Cds size426
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig97867.19229.1prot_F-distichus_contig97867.19229.1Fucus distichus monoicouspolypeptideF-distichus_contig97867 577..1002 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931157.916299-UTR-F-distichus_contig97867:546..5761622931157.916299-UTR-F-distichus_contig97867:546..576Fucus distichus monoicousUTRF-distichus_contig97867 547..576 +
1690886183.3195696-UTR-F-distichus_contig97867:546..5761690886183.3195696-UTR-F-distichus_contig97867:546..576Fucus distichus monoicousUTRF-distichus_contig97867 547..576 +
1622931157.9522262-UTR-F-distichus_contig97867:1002..10061622931157.9522262-UTR-F-distichus_contig97867:1002..1006Fucus distichus monoicousUTRF-distichus_contig97867 1003..1006 +
1690886183.3549447-UTR-F-distichus_contig97867:1002..10061690886183.3549447-UTR-F-distichus_contig97867:1002..1006Fucus distichus monoicousUTRF-distichus_contig97867 1003..1006 +
1622931157.9670649-UTR-F-distichus_contig97867:1292..13811622931157.9670649-UTR-F-distichus_contig97867:1292..1381Fucus distichus monoicousUTRF-distichus_contig97867 1293..1381 +
1690886183.36692-UTR-F-distichus_contig97867:1292..13811690886183.36692-UTR-F-distichus_contig97867:1292..1381Fucus distichus monoicousUTRF-distichus_contig97867 1293..1381 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931157.9330578-CDS-F-distichus_contig97867:576..10021622931157.9330578-CDS-F-distichus_contig97867:576..1002Fucus distichus monoicousCDSF-distichus_contig97867 577..1002 +
1690886183.3315372-CDS-F-distichus_contig97867:576..10021690886183.3315372-CDS-F-distichus_contig97867:576..1002Fucus distichus monoicousCDSF-distichus_contig97867 577..1002 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig97867.19229.1

>prot_F-distichus_contig97867.19229.1 ID=prot_F-distichus_contig97867.19229.1|Name=mRNA_F-distichus_contig97867.19229.1|organism=Fucus distichus monoicous|type=polypeptide|length=142bp
MVNANGRNKCRIEGCSNRLSFGVTGTRKSAYCLQHTRIRCGFEGRDSQEI
GPHHSDKETIDGASGAKRITNPLFFAHASPPSDMSGGSRKQVRHMDITST
ASERVALQESTAGAVTIPEIDRQKSPIKRGSSVKTEVQLSL*
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mRNA from alignment at F-distichus_contig97867:547..1381+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig97867.19229.1 ID=mRNA_F-distichus_contig97867.19229.1|Name=mRNA_F-distichus_contig97867.19229.1|organism=Fucus distichus monoicous|type=mRNA|length=835bp|location=Sequence derived from alignment at F-distichus_contig97867:547..1381+ (Fucus distichus monoicous)
GAGTATTGTGCATCGCACGCTCCTGACGGGATGGTCAACGCCAACGGCAG
AAATAAATGTAGAATCGAAGGCTGCAGCAACCGGTTGTCGTTCGGAGTGA
CCGGCACGAGGAAGTCAGCGTACTGCCTACAGCACACCAGGATAAGATGC
GGTTTTGAAGGACGCGACAGTCAAGAGATTGGTCCACATCACTCAGATAA
AGAAACCATTGATGGTGCAAGTGGTGCAAAACGGATAACCAATCCTCTTT
TTTTCGCCCATGCAAGCCCTCCATCGGATATGAGTGGAGGTTCTCGTAAA
CAAGTGCGACACATGGACATAACTTCGACAGCATCGGAACGAGTTGCCTT
ACAAGAGTCGACTGCAGGAGCGGTGACTATACCGGAGATCGACCGACAAA
AGTCTCCCATCAAGCGAGGTTCCTCTGTGAAGACGGAAGTACAGCTCTCG
TTGTAGTCAGGTATGCTATGCGCGACCGTAACCTGTCAGATTTAGTACCA
GTTAATTGCAACGATTCCGGCGACCGGAGCTCATTCGTAAGTTTTGCGTT
TGTTTGGATTAAAGAGGTATCCCGTCGCTTTTATGGTTTTTGCATCATTT
TCAGTCGCGAGGCAGGGAGTTCATCTCGGGCATCCCGATTCCTTTTCGAC
CCTCAAGATCTCAACGTCCCAGCCATTCTCCAATGAAACACGTCACGTTT
GCTCACCACCGTCTTGTGCTTTCGTTTTCCCGTCTTTCGAATTCAGATAC
TATGCTCAAGAGCATGGGATTGGTATCGATAATCTAGCCGCCGAGACGCT
CCTAGGTCTGGTGAGGACCCTACCGTGCTTACCCC
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Coding sequence (CDS) from alignment at F-distichus_contig97867:547..1381+

>mRNA_F-distichus_contig97867.19229.1 ID=mRNA_F-distichus_contig97867.19229.1|Name=mRNA_F-distichus_contig97867.19229.1|organism=Fucus distichus monoicous|type=CDS|length=852bp|location=Sequence derived from alignment at F-distichus_contig97867:547..1381+ (Fucus distichus monoicous)
ATGGTCAACGCCAACGGCAGAAATAAATGTAGAATCGAAGGCTGCAGCAA
CCGGTTGTCGTTCGGAGTGACCGGCACGAGGAAGTCAGCGTACTGCCTAC
AGCACACCAGGATAAGATGCGGTTTTGAAGGACGCGACAGTCAAGAGATT
GGTCCACATCACTCAGATAAAGAAACCATTGATGGTGCAAGTGGTGCAAA
ACGGATAACCAATCCTCTTTTTTTCGCCCATGCAAGCCCTCCATCGGATA
TGAGTGGAGGTTCTCGTAAACAAGTGCGACACATGGACATAACTTCGACA
GCATCGGAACGAGTTGCCTTACAAGAGTCGACTGCAGGAGCGGTGACTAT
ACCGGAGATCGACCGACAAAAGTCTCCCATCAAGCGAGGTTCCTCTGTGA
AGACGGAAGTACAGCTCTCGTTGTAGATGGTCAACGCCAACGGCAGAAAT
AAATGTAGAATCGAAGGCTGCAGCAACCGGTTGTCGTTCGGAGTGACCGG
CACGAGGAAGTCAGCGTACTGCCTACAGCACACCAGGATAAGATGCGGTT
TTGAAGGACGCGACAGTCAAGAGATTGGTCCACATCACTCAGATAAAGAA
ACCATTGATGGTGCAAGTGGTGCAAAACGGATAACCAATCCTCTTTTTTT
CGCCCATGCAAGCCCTCCATCGGATATGAGTGGAGGTTCTCGTAAACAAG
TGCGACACATGGACATAACTTCGACAGCATCGGAACGAGTTGCCTTACAA
GAGTCGACTGCAGGAGCGGTGACTATACCGGAGATCGACCGACAAAAGTC
TCCCATCAAGCGAGGTTCCTCTGTGAAGACGGAAGTACAGCTCTCGTTGT
AG
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