mRNA_F-distichus_contig97864.19228.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig97864.19228.1
Unique NamemRNA_F-distichus_contig97864.19228.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig97864.19228.1 vs. uniprot
Match: A0A6H5L0K1_9PHAE (Glutamine--fructose-6-phosphate transaminase (isomerizing) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0K1_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 1.270e-20
Identity = 43/57 (75.44%), Postives = 50/57 (87.72%), Query Frame = 3 
Query:   45 GALKLKEMTYMHAEGYSGSALKHGSFALIDGPDALGGATPIILLILDDEHAPQVRTS 215
            GALKLKEM+Y+HAEGYSG ALKHG FALIDG D   G+TP+I+LILDDEHA Q+RT+
Sbjct:   58 GALKLKEMSYIHAEGYSGGALKHGPFALIDGEDGPEGSTPVIMLILDDEHAHQMRTA 114
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BLAST of mRNA_F-distichus_contig97864.19228.1 vs. uniprot
Match: A0A6U2WZ89_9STRA (Glutamine--fructose-6-phosphate transaminase (isomerizing) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A6U2WZ89_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 2.050e-20
Identity = 43/64 (67.19%), Postives = 50/64 (78.12%), Query Frame = 3 
Query:   45 GALKLKEMTYMHAEGYSGSALKHGSFALIDGPDALGGATPIILLILDDEHAPQVRTSLPSRR*R 236
            GALK+KEM Y+HAEGYSG ALKHG FALIDGP    GATPII+L+LDD+HA  +RT+    R R
Sbjct:   25 GALKIKEMCYLHAEGYSGGALKHGPFALIDGPTGKFGATPIIMLVLDDQHAHHMRTAAEEVRAR 88
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BLAST of mRNA_F-distichus_contig97864.19228.1 vs. uniprot
Match: A0A482SH71_9ARCH (Glutamine--fructose-6-phosphate transaminase (isomerizing) (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SH71_9ARCH)

HSP 1 Score: 89.7 bits (221), Expect = 2.450e-19
Identity = 48/92 (52.17%), Postives = 61/92 (66.30%), Query Frame = 3 
Query:   45 GALKLKEMTYMHAEGYSGSALKHGSFALIDGPDALGGATPIILLILDDEHAPQVRTSLPSRR*R*TDCVTC-D*RKYRTYLDL--LSIPQSG 311
            GALK+KEM+Y+HAEGYSG ALKHG FALI+GP+   G TP+ILLILDD+HA  +RT+    + R    +   D  K    +D   L IP +G
Sbjct:  145 GALKIKEMSYIHAEGYSGGALKHGPFALIEGPEGRDGRTPVILLILDDDHANHMRTAAEEVKARGAQVIVITDNPKLAQGIDSDPLVIPNNG 236
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BLAST of mRNA_F-distichus_contig97864.19228.1 vs. uniprot
Match: A0A7S1E2C1_9STRA (Glutamine--fructose-6-phosphate transaminase (isomerizing) n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E2C1_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 4.540e-19
Identity = 48/92 (52.17%), Postives = 60/92 (65.22%), Query Frame = 3 
Query:   45 GALKLKEMTYMHAEGYSGSALKHGSFALIDGPDALGGATPIILLILDDEHAPQVRTSLPSRR*R*TDCVTC-D*RKYRTYL--DLLSIPQSG 311
            GALK+KEMTY+HAEGYSG ALKHG FALID      GATPI ++ILDD+HA  +RT+    R R  + +   D R+    L  D + IP +G
Sbjct:   69 GALKIKEMTYLHAEGYSGGALKHGPFALIDDESGKFGATPIFMIILDDQHAHHMRTAAEEVRARGAEVIIITDKRELARDLCDDPIVIPSNG 160
[Close]
BLAST of mRNA_F-distichus_contig97864.19228.1 vs. uniprot
Match: A0A7S2R8P1_9STRA (Glutamine--fructose-6-phosphate transaminase (isomerizing) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R8P1_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 8.710e-19
Identity = 51/92 (55.43%), Postives = 61/92 (66.30%), Query Frame = 3 
Query:   45 GALKLKEMTYMHAEGYSGSALKHGSFALIDGPDALGGATPIILLILDDEHAPQVRTSLPSRR*R*TDC-VTCD*RKYRTYLDL--LSIPQSG 311
            GALK+KE TY+HAEGYSG ALKHG FALI+GP    GATPII LILDDE+A Q+R      + R  +C +  D  K    LD   L IP++G
Sbjct:  531 GALKIKECTYLHAEGYSGGALKHGPFALIEGPAGKRGATPIICLILDDEYAQQMRIVAEEVKARGAECFIITDNPKLADGLDPDPLVIPRNG 622
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BLAST of mRNA_F-distichus_contig97864.19228.1 vs. uniprot
Match: D7G5I8_ECTSI (Glutamine--fructose-6-phosphate transaminase (isomerizing) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5I8_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 1.190e-18
Identity = 42/57 (73.68%), Postives = 50/57 (87.72%), Query Frame = 3 
Query:   45 GALKLKEMTYMHAEGYSGSALKHGSFALIDGPDALGGATPIILLILDDEHAPQVRTS 215
            GALKLKEM+Y+HAEGYSG ALKHG FALI+G D   G+TP+I+LILDDEHA Q+RT+
Sbjct:  492 GALKLKEMSYIHAEGYSGGALKHGPFALIEGEDGPEGSTPVIMLILDDEHAHQMRTA 548
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BLAST of mRNA_F-distichus_contig97864.19228.1 vs. uniprot
Match: A0A4D9CTV3_9STRA (Glutamine--fructose-6-phosphate transaminase (isomerizing) n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CTV3_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 1.630e-18
Identity = 50/92 (54.35%), Postives = 60/92 (65.22%), Query Frame = 3 
Query:   45 GALKLKEMTYMHAEGYSGSALKHGSFALIDGPDALGGATPIILLILDDEHAPQVRTSLPSRR*R*TDCVTC-D*RKYRTYL--DLLSIPQSG 311
            GALKLKEM Y+HAEGYSG ALKHG FALI+G +   GATPII LILDDEHA  +RT+    + R  D +   D  K    L  D + +P +G
Sbjct:  532 GALKLKEMAYIHAEGYSGGALKHGPFALIEGKEGKFGATPIICLILDDEHAQHMRTAAEEVKARGADLIVITDNPKLARGLVPDPIIVPNNG 623
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BLAST of mRNA_F-distichus_contig97864.19228.1 vs. uniprot
Match: A0A7S1ZLX8_TRICV (Glutamine--fructose-6-phosphate transaminase (isomerizing) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZLX8_TRICV)

HSP 1 Score: 85.9 bits (211), Expect = 3.260e-18
Identity = 49/92 (53.26%), Postives = 61/92 (66.30%), Query Frame = 3 
Query:   45 GALKLKEMTYMHAEGYSGSALKHGSFALIDGPDALGGATPIILLILDDEHAPQVRTSLPSRR*R*TDCVTC-D*RKYRTYLD--LLSIPQSG 311
            GALKLKEM+Y+HAEGYSG ALKHG FALI+  +   G+TPIILLILDD HA  +RT+    + R  + +   D R     LD   + IPQ+G
Sbjct:  100 GALKLKEMSYIHAEGYSGGALKHGPFALIEDENGKFGSTPIILLILDDSHAHHMRTAAEEVKARGAEVIIITDKRGLADGLDDDPIVIPQNG 191
[Close]
BLAST of mRNA_F-distichus_contig97864.19228.1 vs. uniprot
Match: A0A6H5KT91_9PHAE (Glutamine--fructose-6-phosphate transaminase (isomerizing) n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KT91_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 4.190e-18
Identity = 42/56 (75.00%), Postives = 48/56 (85.71%), Query Frame = 3 
Query:   45 GALKLKEMTYMHAEGYSGSALKHGSFALIDGPDALGGATPIILLILDDEHAPQVRT 212
            GALKLKEM Y+HAEGYSG ALKHG FALI+G +   GATPIIL+ILDD+HA Q+RT
Sbjct:  650 GALKLKEMAYIHAEGYSGGALKHGPFALIEGAEGDNGATPIILIILDDDHAHQMRT 705
[Close]
BLAST of mRNA_F-distichus_contig97864.19228.1 vs. uniprot
Match: A0A7S2R2X6_9STRA (Glutamine--fructose-6-phosphate transaminase (isomerizing) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R2X6_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.940e-17
Identity = 42/69 (60.87%), Postives = 51/69 (73.91%), Query Frame = 3 
Query:   45 GALKLKEMTYMHAEGYSGSALKHGSFALIDGPDALGGATPIILLILDDEHAPQVRTSLPSRR*R*TDCV 251
            GALK+KEM Y+HAEGYSG ALKHG FALI+G   + G+TPIILLI DDEHA  +RT+    + R  D +
Sbjct:  495 GALKIKEMCYLHAEGYSGGALKHGPFALIEGEKGVFGSTPIILLIFDDEHAHHMRTAAEEVKARGADLI 563
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig97864.19228.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0K1_9PHAE1.270e-2075.44Glutamine--fructose-6-phosphate transaminase (isom... [more]
A0A6U2WZ89_9STRA2.050e-2067.19Glutamine--fructose-6-phosphate transaminase (isom... [more]
A0A482SH71_9ARCH2.450e-1952.17Glutamine--fructose-6-phosphate transaminase (isom... [more]
A0A7S1E2C1_9STRA4.540e-1952.17Glutamine--fructose-6-phosphate transaminase (isom... [more]
A0A7S2R8P1_9STRA8.710e-1955.43Glutamine--fructose-6-phosphate transaminase (isom... [more]
D7G5I8_ECTSI1.190e-1873.68Glutamine--fructose-6-phosphate transaminase (isom... [more]
A0A4D9CTV3_9STRA1.630e-1854.35Glutamine--fructose-6-phosphate transaminase (isom... [more]
A0A7S1ZLX8_TRICV3.260e-1853.26Glutamine--fructose-6-phosphate transaminase (isom... [more]
A0A6H5KT91_9PHAE4.190e-1875.00Glutamine--fructose-6-phosphate transaminase (isom... [more]
A0A7S2R2X6_9STRA1.940e-1760.87Glutamine--fructose-6-phosphate transaminase (isom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig97864contigF-distichus_contig97864:489..841 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.8
Seed ortholog evalue1.8e-12
Seed eggNOG ortholog2880.D7G5I8
Preferred nameGFPT1
KEGG rclassRC00010,RC00163,RC02752
KEGG koko:K00820
KEGG ReactionR00768
KEGG Pathwayko00250,ko00520,ko01100,ko01130,ko04931,map00250,map00520,map01100,map01130,map04931
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000271,GO:0003674,GO:0003824,GO:0004360,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0005979,GO:0006002,GO:0006022,GO:0006023,GO:0006030,GO:0006031,GO:0006037,GO:0006038,GO:0006040,GO:0006041,GO:0006042,GO:0006047,GO:0006048,GO:0006082,GO:0006091,GO:0006109,GO:0006112,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006520,GO:0006541,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0007623,GO:0008150,GO:0008152,GO:0008483,GO:0009058,GO:0009059,GO:0009064,GO:0009100,GO:0009101,GO:0009225,GO:0009226,GO:0009272,GO:0009719,GO:0009725,GO:0009743,GO:0009744,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010033,GO:0010243,GO:0010383,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010675,GO:0010677,GO:0010906,GO:0010962,GO:0015980,GO:0016043,GO:0016051,GO:0016597,GO:0016740,GO:0016769,GO:0017144,GO:0018130,GO:0019222,GO:0019438,GO:0019538,GO:0019637,GO:0019752,GO:0022607,GO:0023052,GO:0030246,GO:0030447,GO:0030448,GO:0030968,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031406,GO:0032501,GO:0032868,GO:0032869,GO:0032870,GO:0032881,GO:0032885,GO:0032922,GO:0033554,GO:0033692,GO:0034097,GO:0034221,GO:0034285,GO:0034620,GO:0034637,GO:0034641,GO:0034645,GO:0034654,GO:0034976,GO:0035690,GO:0035966,GO:0035967,GO:0036094,GO:0036211,GO:0036498,GO:0040007,GO:0042221,GO:0042493,GO:0042546,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0043255,GO:0043412,GO:0043413,GO:0043434,GO:0043436,GO:0043467,GO:0043933,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045229,GO:0045719,GO:0045912,GO:0046349,GO:0046483,GO:0048511,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051259,GO:0051260,GO:0051262,GO:0051278,GO:0051289,GO:0051716,GO:0055086,GO:0055114,GO:0060255,GO:0062012,GO:0065003,GO:0065007,GO:0070085,GO:0070548,GO:0070589,GO:0070592,GO:0070873,GO:0070874,GO:0070887,GO:0071310,GO:0071345,GO:0071375,GO:0071417,GO:0071495,GO:0071554,GO:0071704,GO:0071840,GO:0071852,GO:0071966,GO:0080090,GO:1901071,GO:1901073,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1990823,GO:1990830,GO:2000112,GO:2000113
EggNOG free text desc.glutamine-fructose-6-phosphate transaminase (isomerizing) activity
EggNOG OGsCOG0449@1,KOG1268@2759
EC2.6.1.16
COG Functional cat.M
BiGG ReactioniMM904.YKL104C,iND750.YKL104C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Exons1
Model size353
Cds size168
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig97864.19228.1prot_F-distichus_contig97864.19228.1Fucus distichus monoicouspolypeptideF-distichus_contig97864 554..721 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931157.8362646-UTR-F-distichus_contig97864:488..5531622931157.8362646-UTR-F-distichus_contig97864:488..553Fucus distichus monoicousUTRF-distichus_contig97864 489..553 +
1690886183.2800696-UTR-F-distichus_contig97864:488..5531690886183.2800696-UTR-F-distichus_contig97864:488..553Fucus distichus monoicousUTRF-distichus_contig97864 489..553 +
1622931157.870489-UTR-F-distichus_contig97864:721..8411622931157.870489-UTR-F-distichus_contig97864:721..841Fucus distichus monoicousUTRF-distichus_contig97864 722..841 +
1690886183.3077157-UTR-F-distichus_contig97864:721..8411690886183.3077157-UTR-F-distichus_contig97864:721..841Fucus distichus monoicousUTRF-distichus_contig97864 722..841 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931157.853796-CDS-F-distichus_contig97864:553..7211622931157.853796-CDS-F-distichus_contig97864:553..721Fucus distichus monoicousCDSF-distichus_contig97864 554..721 +
1690886183.2927656-CDS-F-distichus_contig97864:553..7211690886183.2927656-CDS-F-distichus_contig97864:553..721Fucus distichus monoicousCDSF-distichus_contig97864 554..721 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig97864.19228.1

>prot_F-distichus_contig97864.19228.1 ID=prot_F-distichus_contig97864.19228.1|Name=mRNA_F-distichus_contig97864.19228.1|organism=Fucus distichus monoicous|type=polypeptide|length=56bp
MTYMHAEGYSGSALKHGSFALIDGPDALGGATPIILLILDDEHAPQVRTS
LPSRR*
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mRNA from alignment at F-distichus_contig97864:489..841+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig97864.19228.1 ID=mRNA_F-distichus_contig97864.19228.1|Name=mRNA_F-distichus_contig97864.19228.1|organism=Fucus distichus monoicous|type=mRNA|length=353bp|location=Sequence derived from alignment at F-distichus_contig97864:489..841+ (Fucus distichus monoicous)
GGTGCTTTAAAACTTTGTTGCTCGCTTTCACCTTGATCGAATAGGGCGCT
CTAAAACTGAAGGAAATGACGTACATGCATGCCGAGGGCTACAGCGGGAG
CGCTCTGAAGCATGGATCGTTCGCCTTGATCGACGGACCCGATGCACTGG
GCGGTGCTACGCCCATCATCCTCCTCATTCTTGACGATGAGCACGCTCCC
CAGGTACGGACGAGCCTCCCGTCGCGTCGATAACGCTAGACTGATTGCGT
GACTTGTGATTAAAGAAAATACAGAACGTACCTAGACCTTCTGAGCATCC
CCCAGTCAGGGGGAAAAAGCGTCAAAACGTTTAGGTCGGATCAAAGGCTG
CAA
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Coding sequence (CDS) from alignment at F-distichus_contig97864:489..841+

>mRNA_F-distichus_contig97864.19228.1 ID=mRNA_F-distichus_contig97864.19228.1|Name=mRNA_F-distichus_contig97864.19228.1|organism=Fucus distichus monoicous|type=CDS|length=336bp|location=Sequence derived from alignment at F-distichus_contig97864:489..841+ (Fucus distichus monoicous)
ATGACGTACATGCATGCCGAGGGCTACAGCGGGAGCGCTCTGAAGCATGG
ATCGTTCGCCTTGATCGACGGACCCGATGCACTGGGCGGTGCTACGCCCA
TCATCCTCCTCATTCTTGACGATGAGCACGCTCCCCAGGTACGGACGAGC
CTCCCGTCGCGTCGATAAATGACGTACATGCATGCCGAGGGCTACAGCGG
GAGCGCTCTGAAGCATGGATCGTTCGCCTTGATCGACGGACCCGATGCAC
TGGGCGGTGCTACGCCCATCATCCTCCTCATTCTTGACGATGAGCACGCT
CCCCAGGTACGGACGAGCCTCCCGTCGCGTCGATAA
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