mRNA_F-distichus_contig97776.19223.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig97776.19223.1
Unique NamemRNA_F-distichus_contig97776.19223.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig97776.19223.1 vs. uniprot
Match: A0A6H5L3R1_9PHAE (Fanconi-associated nuclease n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3R1_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 2.000e-13
Identity = 33/40 (82.50%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:   37 QVKGPGDRLSDRQMAWLRILDHGGARVGVCRVTEGSGGSH 156
            +VKGP DRLSDRQMAWLRILD G A VGVC VTEG+GGSH
Sbjct: 1453 EVKGPSDRLSDRQMAWLRILDRGRALVGVCHVTEGAGGSH 1492
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BLAST of mRNA_F-distichus_contig97776.19223.1 vs. uniprot
Match: D7FNK3_ECTSI (Fanconi-associated nuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNK3_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 1.060e-12
Identity = 32/40 (80.00%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:   37 QVKGPGDRLSDRQMAWLRILDHGGARVGVCRVTEGSGGSH 156
            +VKGP DRLSDRQ AWLRILD G A VGVC VTEG+GGSH
Sbjct:  297 EVKGPSDRLSDRQTAWLRILDRGRALVGVCHVTEGAGGSH 336
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BLAST of mRNA_F-distichus_contig97776.19223.1 vs. uniprot
Match: A0A7S0K7C4_CAFRO (Fanconi-associated nuclease n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0K7C4_CAFRO)

HSP 1 Score: 50.8 bits (120), Expect = 1.080e-5
Identity = 23/34 (67.65%), Postives = 26/34 (76.47%), Query Frame = 1 
Query:   37 QVKGPGDRLSDRQMAWLRILDHGGARVGVCRVTE 138
            +VKGP DRLSD+Q  WLRIL  GG RV +CRV E
Sbjct:  598 EVKGPRDRLSDKQRYWLRILLAGGCRVDLCRVQE 631
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BLAST of mRNA_F-distichus_contig97776.19223.1 vs. uniprot
Match: A0A6A5BKT8_NAEFO (Fanconi-associated nuclease n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5BKT8_NAEFO)

HSP 1 Score: 48.9 bits (115), Expect = 5.250e-5
Identity = 23/60 (38.33%), Postives = 34/60 (56.67%), Query Frame = 1 
Query:   37 QVKGPGDRLSDRQMAWLRILDHGGARVGVCRV---------TEGSGGSHDVPPRGSTKKR 189
            ++KGP D+LS++Q+ W+ +L   GA V VC V         T+G   SH+V   G  KK+
Sbjct: 1042 EIKGPNDKLSEKQIIWIDLLSKAGANVEVCHVKVRESSFGETDGGDSSHEVECEGPKKKK 1101
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BLAST of mRNA_F-distichus_contig97776.19223.1 vs. uniprot
Match: A0A7S2S747_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S747_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 5.270e-5
Identity = 21/34 (61.76%), Postives = 24/34 (70.59%), Query Frame = 1 
Query:   37 QVKGPGDRLSDRQMAWLRILDHGGARVGVCRVTE 138
            +VKGP DRL +RQ AWL IL   GA   +CRVTE
Sbjct:  122 EVKGPNDRLMERQRAWLAILKAAGADTRICRVTE 155
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BLAST of mRNA_F-distichus_contig97776.19223.1 vs. uniprot
Match: A0A2R6XQH5_MARPO (Fanconi-associated nuclease n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XQH5_MARPO)

HSP 1 Score: 48.1 bits (113), Expect = 9.850e-5
Identity = 21/34 (61.76%), Postives = 27/34 (79.41%), Query Frame = 1 
Query:   37 QVKGPGDRLSDRQMAWLRILDHGGARVGVCRVTE 138
            +VKGP DRLS++QMAW+ IL +GG  V VC+V E
Sbjct: 1211 EVKGPRDRLSEQQMAWIWILMNGGLSVEVCKVLE 1244
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig97776.19223.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5L3R1_9PHAE2.000e-1382.50Fanconi-associated nuclease n=1 Tax=Ectocarpus sp.... [more]
D7FNK3_ECTSI1.060e-1280.00Fanconi-associated nuclease n=1 Tax=Ectocarpus sil... [more]
A0A7S0K7C4_CAFRO1.080e-567.65Fanconi-associated nuclease n=1 Tax=Cafeteria roen... [more]
A0A6A5BKT8_NAEFO5.250e-538.33Fanconi-associated nuclease n=1 Tax=Naegleria fowl... [more]
A0A7S2S747_9STRA5.270e-561.76Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A2R6XQH5_MARPO9.850e-561.76Fanconi-associated nuclease n=2 Tax=Marchantia pol... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig97776contigF-distichus_contig97776:1812..2009 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.7
Seed ortholog evalue5.8e-10
Seed eggNOG ortholog2880.D7FNK3
KEGG koko:K15363
KEGG Pathwayko03460,map03460
Hectar predicted targeting categoryother localisation
EggNOG free text desc.phosphodiesterase I activity
EggNOG OGsKOG2143@1,KOG2143@2759
EC3.1.4.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Exons1
Model size198
Cds size198
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931157.51836-CDS-F-distichus_contig97776:1811..20091622931157.51836-CDS-F-distichus_contig97776:1811..2009Fucus distichus monoicousCDSF-distichus_contig97776 1812..2009 +
1690886183.1532497-CDS-F-distichus_contig97776:1811..20091690886183.1532497-CDS-F-distichus_contig97776:1811..2009Fucus distichus monoicousCDSF-distichus_contig97776 1812..2009 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig97776.19223.1prot_F-distichus_contig97776.19223.1Fucus distichus monoicouspolypeptideF-distichus_contig97776 1812..2009 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig97776.19223.1

>prot_F-distichus_contig97776.19223.1 ID=prot_F-distichus_contig97776.19223.1|Name=mRNA_F-distichus_contig97776.19223.1|organism=Fucus distichus monoicous|type=polypeptide|length=66bp
LPPTIPRYLKKKQVKGPGDRLSDRQMAWLRILDHGGARVGVCRVTEGSGG
SHDVPPRGSTKKRRA*
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mRNA from alignment at F-distichus_contig97776:1812..2009+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig97776.19223.1 ID=mRNA_F-distichus_contig97776.19223.1|Name=mRNA_F-distichus_contig97776.19223.1|organism=Fucus distichus monoicous|type=mRNA|length=198bp|location=Sequence derived from alignment at F-distichus_contig97776:1812..2009+ (Fucus distichus monoicous)
CTACCTCCAACCATCCCGCGATACTTAAAAAAAAAACAGGTGAAGGGTCC
CGGGGATCGCTTGTCAGACCGCCAGATGGCCTGGCTACGTATTTTGGACC
ACGGCGGCGCCCGCGTCGGCGTGTGCCGAGTGACCGAGGGAAGCGGGGGA
AGCCACGACGTACCTCCGAGGGGCAGCACCAAGAAGCGTCGAGCTTAG
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Coding sequence (CDS) from alignment at F-distichus_contig97776:1812..2009+

>mRNA_F-distichus_contig97776.19223.1 ID=mRNA_F-distichus_contig97776.19223.1|Name=mRNA_F-distichus_contig97776.19223.1|organism=Fucus distichus monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at F-distichus_contig97776:1812..2009+ (Fucus distichus monoicous)
CTACCTCCAACCATCCCGCGATACTTAAAAAAAAAACAGGTGAAGGGTCC
CGGGGATCGCTTGTCAGACCGCCAGATGGCCTGGCTACGTATTTTGGACC
ACGGCGGCGCCCGCGTCGGCGTGTGCCGAGTGACCGAGGGAAGCGGGGGA
AGCCACGACGTACCTCCGAGGGGCAGCACCAAGAAGCGTCGAGCTTAGCT
ACCTCCAACCATCCCGCGATACTTAAAAAAAAAACAGGTGAAGGGTCCCG
GGGATCGCTTGTCAGACCGCCAGATGGCCTGGCTACGTATTTTGGACCAC
GGCGGCGCCCGCGTCGGCGTGTGCCGAGTGACCGAGGGAAGCGGGGGAAG
CCACGACGTACCTCCGAGGGGCAGCACCAAGAAGCGTCGAGCTTAG
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