mRNA_F-distichus_contig97403.19197.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig97403.19197.1
Unique NamemRNA_F-distichus_contig97403.19197.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
[Close]
BLAST of mRNA_F-distichus_contig97403.19197.1 vs. uniprot
Match: A0A6H5L3P2_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3P2_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 1.770e-10
Identity = 25/31 (80.65%), Postives = 30/31 (96.77%), Query Frame = 1 
Query:    1 KKGSVRWICLTGSDPSLVIYMANRYGIHPLQ 93
            +KG VRW+C+TGSDPSLVI+MANR+GIHPLQ
Sbjct:  410 QKGDVRWVCVTGSDPSLVIHMANRFGIHPLQ 440
[Close]
BLAST of mRNA_F-distichus_contig97403.19197.1 vs. uniprot
Match: D7G9B2_ECTSI (Magnesium and cobalt transport protein CorA n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9B2_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 1.770e-10
Identity = 25/31 (80.65%), Postives = 30/31 (96.77%), Query Frame = 1 
Query:    1 KKGSVRWICLTGSDPSLVIYMANRYGIHPLQ 93
            +KG VRW+C+TGSDPSLVI+MANR+GIHPLQ
Sbjct:  208 QKGDVRWVCVTGSDPSLVIHMANRFGIHPLQ 238
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig97403.19197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L3P2_9PHAE1.770e-1080.65EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
D7G9B2_ECTSI1.770e-1080.65Magnesium and cobalt transport protein CorA n=1 Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig97403contigF-distichus_contig97403:2006..2113 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.5
Seed ortholog evalue2.3e-08
Seed eggNOG ortholog2880.D7G9B2
Preferred nameMGT1
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.CorA-like Mg2 transporter protein
EggNOG OGs2R8TN@2759,COG0598@1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size108
Cds size108
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931154.5071874-CDS-F-distichus_contig97403:2005..21131622931154.5071874-CDS-F-distichus_contig97403:2005..2113Fucus distichus monoicousCDSF-distichus_contig97403 2006..2113 -
1690886181.8685179-CDS-F-distichus_contig97403:2005..21131690886181.8685179-CDS-F-distichus_contig97403:2005..2113Fucus distichus monoicousCDSF-distichus_contig97403 2006..2113 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig97403.19197.1prot_F-distichus_contig97403.19197.1Fucus distichus monoicouspolypeptideF-distichus_contig97403 2006..2113 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig97403.19197.1

>prot_F-distichus_contig97403.19197.1 ID=prot_F-distichus_contig97403.19197.1|Name=mRNA_F-distichus_contig97403.19197.1|organism=Fucus distichus monoicous|type=polypeptide|length=36bp
KKGSVRWICLTGSDPSLVIYMANRYGIHPLQAGGR*
back to top

mRNA from alignment at F-distichus_contig97403:2006..2113-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig97403.19197.1 ID=mRNA_F-distichus_contig97403.19197.1|Name=mRNA_F-distichus_contig97403.19197.1|organism=Fucus distichus monoicous|type=mRNA|length=108bp|location=Sequence derived from alignment at F-distichus_contig97403:2006..2113- (Fucus distichus monoicous)
AAAAAGGGTTCGGTGCGCTGGATTTGCCTCACGGGATCCGACCCGTCTCT
CGTCATCTACATGGCCAACCGTTATGGCATCCATCCTCTGCAGGCGGGTG
GGAGATGA
back to top

Coding sequence (CDS) from alignment at F-distichus_contig97403:2006..2113-

>mRNA_F-distichus_contig97403.19197.1 ID=mRNA_F-distichus_contig97403.19197.1|Name=mRNA_F-distichus_contig97403.19197.1|organism=Fucus distichus monoicous|type=CDS|length=216bp|location=Sequence derived from alignment at F-distichus_contig97403:2006..2113- (Fucus distichus monoicous)
AAAAAGGGTTCGGTGCGCTGGATTTGCCTCACGGGATCCGACCCGTCTCT
CGTCATCTACATGGCCAACCGTTATGGCATCCATCCTCTGCAGGCGGGTG
GGAGATGAAAAAAGGGTTCGGTGCGCTGGATTTGCCTCACGGGATCCGAC
CCGTCTCTCGTCATCTACATGGCCAACCGTTATGGCATCCATCCTCTGCA
GGCGGGTGGGAGATGA
back to top