mRNA_F-distichus_contig9740.19196.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig9740.19196.1
Unique NamemRNA_F-distichus_contig9740.19196.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig9740.19196.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig9740contigF-distichus_contig9740:2943..4005 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size705
Cds size705
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931154.4235609-CDS-F-distichus_contig9740:2942..31551622931154.4235609-CDS-F-distichus_contig9740:2942..3155Fucus distichus monoicousCDSF-distichus_contig9740 2943..3155 -
1690886181.83387-CDS-F-distichus_contig9740:2942..31551690886181.83387-CDS-F-distichus_contig9740:2942..3155Fucus distichus monoicousCDSF-distichus_contig9740 2943..3155 -
1622931154.4391003-CDS-F-distichus_contig9740:3513..40051622931154.4391003-CDS-F-distichus_contig9740:3513..4005Fucus distichus monoicousCDSF-distichus_contig9740 3514..4005 -
1690886181.8522806-CDS-F-distichus_contig9740:3513..40051690886181.8522806-CDS-F-distichus_contig9740:3513..4005Fucus distichus monoicousCDSF-distichus_contig9740 3514..4005 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig9740.19196.1prot_F-distichus_contig9740.19196.1Fucus distichus monoicouspolypeptideF-distichus_contig9740 2943..4005 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig9740.19196.1

>prot_F-distichus_contig9740.19196.1 ID=prot_F-distichus_contig9740.19196.1|Name=mRNA_F-distichus_contig9740.19196.1|organism=Fucus distichus monoicous|type=polypeptide|length=235bp
MDYSNAGGEFEDKIVGGADTDGNVREIDEGSNESNRVDEEEVETEDMKDN
AEDGDDAGEQAGAKVTSEVNKGVEGEVERETAGRDNACAEAGEDEDPNDD
TGGMDDGENHGDYFEEEGDVEQNDMWAGEEGREAQDGEGEEKEQDIDGDE
DEEEDNYEMALEEHSNAAPSPLDTEEEDSDEFFEAREALEDPQDRTVASF
SGTVDDAPAVVATVDDVTDDCEVGGHAAAEDPREA
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mRNA from alignment at F-distichus_contig9740:2943..4005-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig9740.19196.1 ID=mRNA_F-distichus_contig9740.19196.1|Name=mRNA_F-distichus_contig9740.19196.1|organism=Fucus distichus monoicous|type=mRNA|length=1063bp|location=Sequence derived from alignment at F-distichus_contig9740:2943..4005- (Fucus distichus monoicous)
ATGGATTATTCAAATGCGGGAGGAGAATTCGAAGACAAAATCGTTGGAGG
GGCGGATACGGATGGAAACGTGAGGGAAATAGACGAGGGAAGTAACGAGT
CAAATCGTGTGGATGAGGAAGAGGTTGAGACCGAGGACATGAAAGATAAT
GCGGAGGATGGTGATGACGCTGGAGAACAGGCGGGGGCTAAAGTGACTAG
TGAAGTTAACAAGGGCGTGGAAGGCGAGGTGGAAAGAGAGACTGCAGGTC
GAGATAACGCTTGCGCCGAAGCTGGGGAGGATGAGGACCCTAATGATGAC
ACGGGGGGCATGGATGACGGTGAGAATCATGGGGACTATTTCGAAGAGGA
GGGAGATGTGGAACAAAATGATATGTGGGCAGGAGAAGAAGGAAGGGAAG
CTCAAGATGGAGAGGGAGAAGAGAAGGAACAGGATATAGACGGAGATGAA
GATGAAGAAGAGGACAATTATGAGATGGCATTGGAAGAGCACGTGAGTGA
AGAGGAAGCAGAGTCGTGGGAGGATGGGGATGGAGGCAATGATGAGAGGG
TATTAGGCTATGACGATGAAGATAATAACGAGGAGAGATTGGACAATGAT
TTGGTGATTCAATCGTAAGGCACAGGCAACCAGTACGTTGTTGTATCTTT
CTTATACAGTGGTGCCCAATGCTTCTATTAGTATGTATCTCACCTCTTCG
TCGGATTCTGCAAGGTCAATCGATGCCTCCTCCGTATCTCCCGTCATAGT
CATTGCCATACCCATTGCAATACCCTCCCTCTTTTCCTCTCCTTCACCTT
CCTCGTCCTTATACTCCGATGCCCCTTCATCAATGCCTTCATCGCCGTAG
TCTAATGCCGCGCCATCTCCGTTAGACACGGAGGAAGAGGATTCGGACGA
ATTTTTTGAAGCCAGGGAAGCTTTAGAGGACCCTCAAGACCGTACCGTGG
CGTCTTTCTCTGGCACTGTCGACGATGCTCCTGCTGTCGTGGCCACAGTT
GACGATGTAACTGATGACTGTGAAGTTGGTGGTCATGCAGCTGCGGAGGA
TCCGCGAGAAGCT
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Coding sequence (CDS) from alignment at F-distichus_contig9740:2943..4005-

>mRNA_F-distichus_contig9740.19196.1 ID=mRNA_F-distichus_contig9740.19196.1|Name=mRNA_F-distichus_contig9740.19196.1|organism=Fucus distichus monoicous|type=CDS|length=1410bp|location=Sequence derived from alignment at F-distichus_contig9740:2943..4005- (Fucus distichus monoicous)
ATGGATTATTCAAATGCGGGAGGAGAATTCGAAGACAAAATCGTTGGAGG
GGCGGATACGGATGGAAACGTGAGGGAAATAGACGAGGGAAGTAACGAGT
CAAATCGTGTGGATGAGGAAGAGGTTGAGACCGAGGACATGAAAGATAAT
GCGGAGGATGGTGATGACGCTGGAGAACAGGCGGGGGCTAAAGTGACTAG
TGAAGTTAACAAGGGCGTGGAAGGCGAGGTGGAAAGAGAGACTGCAGGTC
GAGATAACGCTTGCGCCGAAGCTGGGGAGGATGAGGACCCTAATGATGAC
ACGGGGGGCATGGATGACGGTGAGAATCATGGGGACTATTTCGAAGAGGA
GGGAGATGTGGAACAAAATGATATGTGGGCAGGAGAAGAAGGAAGGGAAG
CTCAAGATGGAGAGGGAGAAGAGAAGGAACAGGATATAGACGGAGATGAA
GATGAAGAAGAGGACAATTATGAGATGGCATTGGAAGAGCACATGGATTA
TTCAAATGCGGGAGGAGAATTCGAAGACAAAATCGTTGGAGGGGCGGATA
CGGATGGAAACGTGAGGGAAATAGACGAGGGAAGTAACGAGTCAAATCGT
GTGGATGAGGAAGAGGTTGAGACCGAGGACATGAAAGATAATGCGGAGGA
TGGTGATGACGCTGGAGAACAGGCGGGGGCTAAAGTGACTAGTGAAGTTA
ACAAGGGCGTGGAAGGCGAGGTGGAAAGAGAGACTGCAGGTCGAGATAAC
GCTTGCGCCGAAGCTGGGGAGGATGAGGACCCTAATGATGACACGGGGGG
CATGGATGACGGTGAGAATCATGGGGACTATTTCGAAGAGGAGGGAGATG
TGGAACAAAATGATATGTGGGCAGGAGAAGAAGGAAGGGAAGCTCAAGAT
GGAGAGGGAGAAGAGAAGGAACAGGATATAGACGGAGATGAAGATGAAGA
AGAGGACAATTATGAGATGGCATTGGAAGAGCACTCTAATGCCGCGCCAT
CTCCGTTAGACACGGAGGAAGAGGATTCGGACGAATTTTTTGAAGCCAGG
GAAGCTTTAGAGGACCCTCAAGACCGTACCGTGGCGTCTTTCTCTGGCAC
TGTCGACGATGCTCCTGCTGTCGTGGCCACAGTTGACGATGTAACTGATG
ACTGTGAAGTTGGTGGTCATGCAGCTGCGGAGGATCCGCGAGAAGCTTCT
AATGCCGCGCCATCTCCGTTAGACACGGAGGAAGAGGATTCGGACGAATT
TTTTGAAGCCAGGGAAGCTTTAGAGGACCCTCAAGACCGTACCGTGGCGT
CTTTCTCTGGCACTGTCGACGATGCTCCTGCTGTCGTGGCCACAGTTGAC
GATGTAACTGATGACTGTGAAGTTGGTGGTCATGCAGCTGCGGAGGATCC
GCGAGAAGCT
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